RNA–Protein interactions for RNA: ENST00000040877.1

TARBP1-201, Transcript of TAR (HIV-1) RNA binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TARBP1, Length 5,130 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARBP1-201ENST00000040877 UTP3Q9NQZ2 479 aaKnown RBP eCLIP27.16■■□□□ 1.943e-7■■■■■ 149.7
TARBP1-201ENST00000040877 AARSP49588 968 aaKnown RBP eCLIP24.27■■□□□ 1.483e-8■■■■■ 82.4
TARBP1-201ENST00000040877 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.09■■□□□ 1.778e-8■■■■■ 60.4
TARBP1-201ENST00000040877 HNRNPMP52272 730 aaKnown RBP eCLIP29.63■■■□□ 2.338e-7■■■■■ 58.1
TARBP1-201ENST00000040877 PCBP2Q15366 365 aaKnown RBP eCLIP22.31■■□□□ 1.164e-10■■■■■ 46.1
TARBP1-201ENST00000040877 GTF2F1P35269 517 aaKnown RBP eCLIP26.04■■□□□ 1.761e-8■■■■■ 31.2
TARBP1-201ENST00000040877 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.28■■■□□ 2.124e-6■■■■■ 30.2
TARBP1-201ENST00000040877 FKBP4Q02790 459 aaKnown RBP eCLIP27.48■■□□□ 1.993e-6■■■■■ 27.3
TARBP1-201ENST00000040877 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.81■■■□□ 2.048e-7■■■■□ 26.5
TARBP1-201ENST00000040877 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.08■■■□□ 2.258e-8■■■■□ 26.3
TARBP1-201ENST00000040877 TBRG4Q969Z0 631 aaKnown RBP eCLIP24.96■■□□□ 1.592e-6■■■■□ 26.2
TARBP1-201ENST00000040877 SF3B4Q15427 424 aaKnown RBP eCLIP21.94■■□□□ 1.12e-7■■■■□ 25.7
TARBP1-201ENST00000040877 KHSRPQ92945 711 aaKnown RBP eCLIP21.71■■□□□ 1.076e-10■■■■□ 24.5
TARBP1-201ENST00000040877 PRPF4O43172 522 aaKnown RBP eCLIP24.13■■□□□ 1.452e-6■■■■□ 23.1
TARBP1-201ENST00000040877 ZNF622Q969S3 477 aaKnown RBP eCLIP26.74■■□□□ 1.877e-6■■■■□ 22.7
TARBP1-201ENST00000040877 PTBP1P26599 531 aaKnown RBP eCLIP21.25■□□□□ 0.991e-6■■■■□ 21.9
TARBP1-201ENST00000040877 DDX59Q5T1V6 619 aaKnown RBP eCLIP22.65■■□□□ 1.227e-8■■■■□ 21.6
TARBP1-201ENST00000040877 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.1■■□□□ 1.771e-8■■■■□ 21.6
TARBP1-201ENST00000040877 EIF3HO15372 352 aaKnown RBP eCLIP24.08■■□□□ 1.456e-7■■■■□ 19.3
TARBP1-201ENST00000040877 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP22.13■■□□□ 1.132e-7■■■□□ 19
TARBP1-201ENST00000040877 MATR3P43243 847 aaKnown RBP eCLIP26.87■■□□□ 1.892e-6■■■□□ 18.8
TARBP1-201ENST00000040877 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.42■■■□□ 2.629e-7■■■□□ 18.7
TARBP1-201ENST00000040877 EFTUD2Q15029 972 aaKnown RBP eCLIP24.33■■□□□ 1.498e-8■■■□□ 18.5
TARBP1-201ENST00000040877 HLTFQ14527 1009 aaKnown RBP eCLIP26.31■■□□□ 1.81e-6■■■□□ 18.3
TARBP1-201ENST00000040877 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP26.47■■□□□ 1.835e-6■■■□□ 18.1
TARBP1-201ENST00000040877 PPIGQ13427 754 aaKnown RBP eCLIP23.26■■□□□ 1.311e-7■■■□□ 18
TARBP1-201ENST00000040877 DDX3XO00571 662 aaKnown RBP eCLIP23.8■■□□□ 1.49e-7■■■□□ 16.8
TARBP1-201ENST00000040877 ZNF800Q2TB10 664 aaPredicted RBP eCLIP22.53■■□□□ 1.22e-6■■■□□ 16.7
TARBP1-201ENST00000040877 ZC3H11AO75152 810 aaKnown RBP eCLIP24.32■■□□□ 1.484e-6■■■□□ 16.2
TARBP1-201ENST00000040877 NCBP2P52298 156 aaKnown RBP eCLIP22.67■■□□□ 1.223e-6■■■□□ 16.1
TARBP1-201ENST00000040877 AQRO60306 1485 aaKnown RBP eCLIP28.89■■■□□ 2.213e-14■■■□□ 15.9
TARBP1-201ENST00000040877 SDAD1Q9NVU7 687 aaKnown RBP eCLIP25.46■■□□□ 1.676e-8■■■□□ 15.3
TARBP1-201ENST00000040877 RPS3P23396 243 aaKnown RBP eCLIP22.28■■□□□ 1.162e-6■■□□□ 14.1
TARBP1-201ENST00000040877 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.66■■□□□ 1.543e-6■■□□□ 13.2
TARBP1-201ENST00000040877 NONOQ15233 471 aaKnown RBP eCLIP26.05■■□□□ 1.761e-9■■□□□ 13.1
TARBP1-201ENST00000040877 EIF3DO15371 548 aaKnown RBP eCLIP24.59■■□□□ 1.532e-7■■□□□ 12.1
TARBP1-201ENST00000040877 HNRNPUQ00839 825 aaKnown RBP eCLIP31.28■■■□□ 2.64e-6■■□□□ 11.5
TARBP1-201ENST00000040877 SAFBQ15424 915 aaKnown RBP eCLIP28.05■■■□□ 2.083e-6■□□□□ 11
TARBP1-201ENST00000040877 PABPN1Q86U42 306 aaKnown RBP eCLIP33.61■■■□□ 2.976e-9■□□□□ 10.6
TARBP1-201ENST00000040877 U2AF2P26368 475 aaKnown RBP eCLIP25.43■■□□□ 1.666e-9■□□□□ 10.5
TARBP1-201ENST00000040877 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP24.22■■□□□ 1.473e-7■□□□□ 10.2
TARBP1-201ENST00000040877 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP24.56■■□□□ 1.523e-6■□□□□ 9.1
TARBP1-201ENST00000040877 RBM15Q96T37 977 aaKnown RBP eCLIP24.32■■□□□ 1.482e-7■□□□□ 8.4
TARBP1-201ENST00000040877 NKRFO15226 690 aaKnown RBP eCLIP24.26■■□□□ 1.471e-11■□□□□ 8.1
Retrieved 44 of 44 RNA–protein pairs in 10.1 ms