RNA–Protein interactions for RNA: ENSMUST00000213874.1

Usp28-203, Transcript of Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Usp28, Length 4,109 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28-203ENSMUST00000213874 Rhox8Q6VSS7 320 aa16.74■□□□□ 0.27
Usp28-203ENSMUST00000213874 Ehmt2Q9Z148 1263 aaKnown RBP16.2■□□□□ 0.18
Usp28-203ENSMUST00000213874 NischQ80TM9 1593 aa15.73■□□□□ 0.11
Usp28-203ENSMUST00000213874 Rpgrip1Q9EPQ2 1331 aa15.53■□□□□ 0.08
Usp28-203ENSMUST00000213874 Ccdc136Q3TVA9 1136 aa15.45■□□□□ 0.06
Usp28-203ENSMUST00000213874 Pcgf6Q99NA9 353 aa15.14■□□□□ 0.01
Usp28-203ENSMUST00000213874 Acin1Q9JIX8 1338 aaKnown RBP15.01□□□□□ -0.01
Usp28-203ENSMUST00000213874 Zeb1Q64318 1117 aa14.98□□□□□ -0.01
Usp28-203ENSMUST00000213874 Gab3Q8BSM5 595 aa14.97□□□□□ -0.01
Usp28-203ENSMUST00000213874 Abcc9P70170 1546 aa14.89□□□□□ -0.03
Usp28-203ENSMUST00000213874 Trim41Q5NCC3 630 aa14.87□□□□□ -0.03
Usp28-203ENSMUST00000213874 Supt5hO55201 1082 aaKnown RBP14.78□□□□□ -0.04
Usp28-203ENSMUST00000213874 Ppargc1bQ8VHJ7 1014 aa14.75□□□□□ -0.05
Usp28-203ENSMUST00000213874 Las1lA2BE28 776 aaKnown RBP14.74□□□□□ -0.05
Usp28-203ENSMUST00000213874 Cngb1E1AZ71 1325 aa14.73□□□□□ -0.05
Usp28-203ENSMUST00000213874 DiexfQ8BTT6 772 aaKnown RBP14.72□□□□□ -0.05
Usp28-203ENSMUST00000213874 Neurod1Q60867 357 aa14.7□□□□□ -0.06
Usp28-203ENSMUST00000213874 CenpbP27790 599 aa14.62□□□□□ -0.07
Usp28-203ENSMUST00000213874 Ccdc180J3QNE4 1664 aa14.6□□□□□ -0.07
Usp28-203ENSMUST00000213874 Abcc8B2RUS7 1588 aa14.59□□□□□ -0.07
Usp28-203ENSMUST00000213874 Wdr66E9Q743 1299 aa14.57□□□□□ -0.08
Usp28-203ENSMUST00000213874 1700123L14RikQ3V2K7 440 aa14.47□□□□□ -0.09
Usp28-203ENSMUST00000213874 Gm35339A0A140LHH9 1649 aa14.42□□□□□ -0.1
Usp28-203ENSMUST00000213874 Myt1Q8CFC2 1127 aa14.41□□□□□ -0.1
Usp28-203ENSMUST00000213874 HrcG5E8J6 738 aa14.41□□□□□ -0.1
Usp28-203ENSMUST00000213874 UbtfP25976 765 aaKnown RBP14.4□□□□□ -0.1
Usp28-203ENSMUST00000213874 Myt1lP97500 1187 aa14.35□□□□□ -0.11
Usp28-203ENSMUST00000213874 Gm38655A0A286YDK6 273 aa14.34□□□□□ -0.11
Usp28-203ENSMUST00000213874 Esf1Q3V1V3 845 aaKnown RBP14.34□□□□□ -0.11
Usp28-203ENSMUST00000213874 Bcl11aQ9QYE3 773 aa14.34□□□□□ -0.11
Usp28-203ENSMUST00000213874 Csrnp3P59055 597 aa14.33□□□□□ -0.12
Usp28-203ENSMUST00000213874 Rtl1Q7M732 1744 aa14.3□□□□□ -0.12
Usp28-203ENSMUST00000213874 Mier1Q5UAK0 511 aa14.25□□□□□ -0.13
Usp28-203ENSMUST00000213874 Chic1Q8CBW7 227 aa14.23□□□□□ -0.13
Usp28-203ENSMUST00000213874 Sall2Q9QX96 1004 aa14.22□□□□□ -0.13
Usp28-203ENSMUST00000213874 Zcchc6Q5BLK4 1491 aaKnown RBP14.16□□□□□ -0.14
Usp28-203ENSMUST00000213874 PrkcshO08795 521 aa14.11□□□□□ -0.15
Usp28-203ENSMUST00000213874 Amer1Q7TS75 1132 aa14.09□□□□□ -0.15
Usp28-203ENSMUST00000213874 Mapk8ip2Q9ERE9 830 aa14.05□□□□□ -0.16
Usp28-203ENSMUST00000213874 Dcaf1Q80TR8 1506 aa14.02□□□□□ -0.17
Usp28-203ENSMUST00000213874 Npm2Q80W85 207 aa14□□□□□ -0.17
Usp28-203ENSMUST00000213874 NefmP08553 848 aa13.99□□□□□ -0.17
Usp28-203ENSMUST00000213874 Anks4bQ8K3X6 423 aa13.98□□□□□ -0.17
Usp28-203ENSMUST00000213874 Aebp2Q9Z248 504 aaKnown RBP13.98□□□□□ -0.17
Usp28-203ENSMUST00000213874 Ap3b1Q9Z1T1 1105 aa13.95□□□□□ -0.18
Usp28-203ENSMUST00000213874 Nop58Q6DFW4 536 aaKnown RBP13.93□□□□□ -0.18
Usp28-203ENSMUST00000213874 Cdk11bP24788 784 aaKnown RBP13.92□□□□□ -0.18
Usp28-203ENSMUST00000213874 Aplp2Q06335 707 aa13.91□□□□□ -0.18
Usp28-203ENSMUST00000213874 Slc24a1Q91WD8 1130 aa13.88□□□□□ -0.19
Usp28-203ENSMUST00000213874 Eid3Q3V124 375 aa13.88□□□□□ -0.19
Usp28-203ENSMUST00000213874 Plekhg3Q4VAC9 1341 aa13.88□□□□□ -0.19
Usp28-203ENSMUST00000213874 Ifnlr1Q8CGK5 535 aa13.84□□□□□ -0.19
Usp28-203ENSMUST00000213874 Rb1cc1Q9ESK9 1588 aa13.81□□□□□ -0.2
Usp28-203ENSMUST00000213874 Il27Q8K3I6 234 aa13.81□□□□□ -0.2
Usp28-203ENSMUST00000213874 Cep164Q5DU05 1446 aa13.74□□□□□ -0.21
Usp28-203ENSMUST00000213874 Ube2uB1AUC4 352 aa13.74□□□□□ -0.21
Usp28-203ENSMUST00000213874 Rsf1E9PWW9 1441 aaKnown RBP13.71□□□□□ -0.21
Usp28-203ENSMUST00000213874 Fam71e1A1L3C1 212 aa13.71□□□□□ -0.22
Usp28-203ENSMUST00000213874 TonslQ6NZL6 1363 aa13.67□□□□□ -0.22
Usp28-203ENSMUST00000213874 SafbD3YXK2 937 aaKnown RBP13.62□□□□□ -0.23
Usp28-203ENSMUST00000213874 Fam50aQ9WV03 339 aaKnown RBP13.62□□□□□ -0.23
Usp28-203ENSMUST00000213874 Ccdc88bQ4QRL3 1481 aa13.59□□□□□ -0.23
Usp28-203ENSMUST00000213874 ClspnQ80YR7 1315 aa13.58□□□□□ -0.24
Usp28-203ENSMUST00000213874 Ttbk1Q6PCN3 1308 aa13.55□□□□□ -0.24
Usp28-203ENSMUST00000213874 Lmod2Q3UHZ5 550 aa13.55□□□□□ -0.24
Usp28-203ENSMUST00000213874 Eif5bQ05D44 1216 aaKnown RBP13.52□□□□□ -0.24
Usp28-203ENSMUST00000213874 ScribQ80U72 1612 aa13.52□□□□□ -0.25
Usp28-203ENSMUST00000213874 NclP09405 707 aaKnown RBP13.5□□□□□ -0.25
Usp28-203ENSMUST00000213874 Hnrnpul2Q00PI9 745 aaKnown RBP13.46□□□□□ -0.25
Usp28-203ENSMUST00000213874 Baz1aO88379 1555 aa13.45□□□□□ -0.26
Usp28-203ENSMUST00000213874 Kdm5dQ62240 1548 aa13.44□□□□□ -0.26
Usp28-203ENSMUST00000213874 Clip1Q922J3 1391 aa13.36□□□□□ -0.27
Usp28-203ENSMUST00000213874 Hdac5Q9Z2V6 1113 aa13.33□□□□□ -0.27
Usp28-203ENSMUST00000213874 Cecr2E9Q2Z1 1453 aa13.29□□□□□ -0.28
Usp28-203ENSMUST00000213874 Brd4Q9ESU6 1400 aaKnown RBP13.29□□□□□ -0.28
Usp28-203ENSMUST00000213874 Pknox2Q8BG99 474 aa13.28□□□□□ -0.28
Usp28-203ENSMUST00000213874 Zbtb4Q5F293 982 aa13.27□□□□□ -0.29
Usp28-203ENSMUST00000213874 P3h3Q8CG70 732 aa13.26□□□□□ -0.29
Usp28-203ENSMUST00000213874 Golga3P55937 1487 aa13.25□□□□□ -0.29
Usp28-203ENSMUST00000213874 Pelp1Q9DBD5 1123 aaKnown RBP13.22□□□□□ -0.29
Usp28-203ENSMUST00000213874 NacadQ5SWP3 1504 aa13.21□□□□□ -0.29
Usp28-203ENSMUST00000213874 Zbtb7cQ8VCZ7 619 aa13.19□□□□□ -0.3
Usp28-203ENSMUST00000213874 Chic2Q9D9G3 165 aa13.18□□□□□ -0.3
Usp28-203ENSMUST00000213874 Anp32aO35381 247 aa13.15□□□□□ -0.3
Usp28-203ENSMUST00000213874 Sin3aQ60520 1274 aaKnown RBP13.15□□□□□ -0.3
Usp28-203ENSMUST00000213874 Ppp4r2Q0VGB7 417 aa13.11□□□□□ -0.31
Usp28-203ENSMUST00000213874 Tnnt3Q9QZ47 272 aa13.11□□□□□ -0.31
Usp28-203ENSMUST00000213874 Fgd1P52734 960 aa13.11□□□□□ -0.31
Usp28-203ENSMUST00000213874 Rtl5Q5DTT4 599 aa13.11□□□□□ -0.31
Usp28-203ENSMUST00000213874 Plcd4Q8K3R3 807 aa13.1□□□□□ -0.31
Usp28-203ENSMUST00000213874 Hspa5P20029 655 aaKnown RBP13.1□□□□□ -0.31
Usp28-203ENSMUST00000213874 Slc4a3P16283 1227 aa13.08□□□□□ -0.32
Usp28-203ENSMUST00000213874 Calr4Q3TQS0 420 aa13.07□□□□□ -0.32
Usp28-203ENSMUST00000213874 BlmO88700 1416 aa13.05□□□□□ -0.32
Usp28-203ENSMUST00000213874 Smarca2Q6DIC0 1577 aa13.04□□□□□ -0.32
Usp28-203ENSMUST00000213874 Rapgef2Q8CHG7 1496 aa13.04□□□□□ -0.32
Usp28-203ENSMUST00000213874 NrdcQ8BHG1 1161 aa13.03□□□□□ -0.32
Usp28-203ENSMUST00000213874 Gtf3c3Q3TMP1 882 aa13.03□□□□□ -0.32
Usp28-203ENSMUST00000213874 Stra8P70278 393 aa13.02□□□□□ -0.32
Usp28-203ENSMUST00000213874 Synj1Q8CHC4 1574 aa13.01□□□□□ -0.33
Retrieved 100 of 22,080 RNA–protein pairs in 13.9 ms