RNA–Protein interactions for RNA: ENSMUST00000209611.1

Sh3rf1-202, Transcript of E3 ubiquitin-protein ligase SH3RF1, mousemouse

TSL 1 (best) BASIC

Gene Sh3rf1, Length 4,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1-202ENSMUST00000209611 NischQ80TM9 1593 aa18.71■□□□□ 0.59
Sh3rf1-202ENSMUST00000209611 Gm35339A0A140LHH9 1649 aa18.37■□□□□ 0.53
Sh3rf1-202ENSMUST00000209611 Abcc9P70170 1546 aa18.05■□□□□ 0.48
Sh3rf1-202ENSMUST00000209611 Abcc8B2RUS7 1588 aa17.75■□□□□ 0.43
Sh3rf1-202ENSMUST00000209611 Rhox8Q6VSS7 320 aa17.58■□□□□ 0.41
Sh3rf1-202ENSMUST00000209611 Rtl1Q7M732 1744 aa16.6■□□□□ 0.25
Sh3rf1-202ENSMUST00000209611 ScribQ80U72 1612 aa16.54■□□□□ 0.24
Sh3rf1-202ENSMUST00000209611 Dcaf1Q80TR8 1506 aa16.5■□□□□ 0.23
Sh3rf1-202ENSMUST00000209611 Rb1cc1Q9ESK9 1588 aa16.37■□□□□ 0.21
Sh3rf1-202ENSMUST00000209611 Kdm5dQ62240 1548 aa16.33■□□□□ 0.21
Sh3rf1-202ENSMUST00000209611 NacadQ5SWP3 1504 aa16.33■□□□□ 0.2
Sh3rf1-202ENSMUST00000209611 Ccdc180J3QNE4 1664 aa16.32■□□□□ 0.2
Sh3rf1-202ENSMUST00000209611 Ccdc136Q3TVA9 1136 aa16.22■□□□□ 0.19
Sh3rf1-202ENSMUST00000209611 Baz1aO88379 1555 aa16.16■□□□□ 0.18
Sh3rf1-202ENSMUST00000209611 Zcchc6Q5BLK4 1491 aaKnown RBP16.09■□□□□ 0.17
Sh3rf1-202ENSMUST00000209611 Trim41Q5NCC3 630 aa15.94■□□□□ 0.14
Sh3rf1-202ENSMUST00000209611 Sycp2Q9CUU3 1500 aa15.92■□□□□ 0.14
Sh3rf1-202ENSMUST00000209611 Crybg2B7ZCC2 1516 aa15.88■□□□□ 0.13
Sh3rf1-202ENSMUST00000209611 HrcG5E8J6 738 aa15.74■□□□□ 0.11
Sh3rf1-202ENSMUST00000209611 Smarca2Q6DIC0 1577 aa15.69■□□□□ 0.1
Sh3rf1-202ENSMUST00000209611 Cngb1E1AZ71 1325 aa15.63■□□□□ 0.09
Sh3rf1-202ENSMUST00000209611 Esf1Q3V1V3 845 aaKnown RBP15.59■□□□□ 0.09
Sh3rf1-202ENSMUST00000209611 Brd4Q9ESU6 1400 aaKnown RBP15.57■□□□□ 0.08
Sh3rf1-202ENSMUST00000209611 BicraF8VPZ9 1578 aa15.46■□□□□ 0.07
Sh3rf1-202ENSMUST00000209611 Cecr2E9Q2Z1 1453 aa15.44■□□□□ 0.06
Sh3rf1-202ENSMUST00000209611 Gab3Q8BSM5 595 aa15.29■□□□□ 0.04
Sh3rf1-202ENSMUST00000209611 Synj1Q8CHC4 1574 aa15.26■□□□□ 0.03
Sh3rf1-202ENSMUST00000209611 Cep164Q5DU05 1446 aa15.26■□□□□ 0.03
Sh3rf1-202ENSMUST00000209611 Ehmt2Q9Z148 1263 aaKnown RBP15.26■□□□□ 0.03
Sh3rf1-202ENSMUST00000209611 Golga3P55937 1487 aa15.26■□□□□ 0.03
Sh3rf1-202ENSMUST00000209611 CftrP26361 1476 aa15.25■□□□□ 0.03
Sh3rf1-202ENSMUST00000209611 Smarca4Q3TKT4 1613 aaKnown RBP15.21■□□□□ 0.03
Sh3rf1-202ENSMUST00000209611 Chic1Q8CBW7 227 aa15.2■□□□□ 0.02
Sh3rf1-202ENSMUST00000209611 Rpgrip1Q9EPQ2 1331 aa15.14■□□□□ 0.01
Sh3rf1-202ENSMUST00000209611 Cttnbp2B9EJA2 1648 aa15.14■□□□□ 0.01
Sh3rf1-202ENSMUST00000209611 Pds5bQ4VA53 1446 aaKnown RBP15.13■□□□□ 0.01
Sh3rf1-202ENSMUST00000209611 Rsf1E9PWW9 1441 aaKnown RBP15.11■□□□□ 0.01
Sh3rf1-202ENSMUST00000209611 Atad2bE9Q166 1460 aaKnown RBP15.09■□□□□ 0.01
Sh3rf1-202ENSMUST00000209611 Ccdc88bQ4QRL3 1481 aa15.04■□□□□ -0
Sh3rf1-202ENSMUST00000209611 Iqgap2Q3UQ44 1575 aa15.03■□□□□ -0
Sh3rf1-202ENSMUST00000209611 Acin1Q9JIX8 1338 aaKnown RBP14.95□□□□□ -0.02
Sh3rf1-202ENSMUST00000209611 Npm2Q80W85 207 aa14.95□□□□□ -0.02
Sh3rf1-202ENSMUST00000209611 Ercc6F8VPZ5 1481 aa14.92□□□□□ -0.02
Sh3rf1-202ENSMUST00000209611 Fmn1Q05860 1466 aa14.89□□□□□ -0.03
Sh3rf1-202ENSMUST00000209611 Top2bQ64511 1612 aa14.88□□□□□ -0.03
Sh3rf1-202ENSMUST00000209611 Myt1lP97500 1187 aa14.86□□□□□ -0.03
Sh3rf1-202ENSMUST00000209611 Il27Q8K3I6 234 aa14.86□□□□□ -0.03
Sh3rf1-202ENSMUST00000209611 Cc2d2aQ8CFW7 1633 aa14.81□□□□□ -0.04
Sh3rf1-202ENSMUST00000209611 Frmpd1A2AKB4 1549 aa14.76□□□□□ -0.05
Sh3rf1-202ENSMUST00000209611 Kif15Q6P9L6 1387 aa14.75□□□□□ -0.05
Sh3rf1-202ENSMUST00000209611 Zeb1Q64318 1117 aa14.73□□□□□ -0.05
Sh3rf1-202ENSMUST00000209611 Wdr62Q3U3T8 1523 aa14.72□□□□□ -0.05
Sh3rf1-202ENSMUST00000209611 Ubl4bQ9CQ84 188 aa14.71□□□□□ -0.05
Sh3rf1-202ENSMUST00000209611 Npm1Q61937 292 aaKnown RBP14.66□□□□□ -0.06
Sh3rf1-202ENSMUST00000209611 Top2aQ01320 1528 aaKnown RBP14.66□□□□□ -0.06
Sh3rf1-202ENSMUST00000209611 Phldb1Q6PDH0 1371 aaKnown RBP14.64□□□□□ -0.07
Sh3rf1-202ENSMUST00000209611 Rapgef2Q8CHG7 1496 aa14.61□□□□□ -0.07
Sh3rf1-202ENSMUST00000209611 Ccdc18Q640L5 1455 aa14.6□□□□□ -0.07
Sh3rf1-202ENSMUST00000209611 Cep162Q6ZQ06 1403 aa14.59□□□□□ -0.07
Sh3rf1-202ENSMUST00000209611 UbtfP25976 765 aaKnown RBP14.57□□□□□ -0.08
Sh3rf1-202ENSMUST00000209611 Lamc3Q9R0B6 1581 aa14.53□□□□□ -0.08
Sh3rf1-202ENSMUST00000209611 Cux2P70298 1426 aa14.5□□□□□ -0.09
Sh3rf1-202ENSMUST00000209611 TnnQ80Z71 1560 aa14.5□□□□□ -0.09
Sh3rf1-202ENSMUST00000209611 Clip1Q922J3 1391 aa14.48□□□□□ -0.09
Sh3rf1-202ENSMUST00000209611 Mier1Q5UAK0 511 aa14.46□□□□□ -0.1
Sh3rf1-202ENSMUST00000209611 NefmP08553 848 aa14.44□□□□□ -0.1
Sh3rf1-202ENSMUST00000209611 Thoc2B1AZI6 1594 aaKnown RBP14.44□□□□□ -0.1
Sh3rf1-202ENSMUST00000209611 Ap3b1Q9Z1T1 1105 aa14.43□□□□□ -0.1
Sh3rf1-202ENSMUST00000209611 Unc13aQ4KUS2 1712 aa14.43□□□□□ -0.1
Sh3rf1-202ENSMUST00000209611 Camsap1A2AHC3 1581 aa14.41□□□□□ -0.1
Sh3rf1-202ENSMUST00000209611 Plekhg3Q4VAC9 1341 aa14.4□□□□□ -0.1
Sh3rf1-202ENSMUST00000209611 Amer1Q7TS75 1132 aa14.39□□□□□ -0.11
Sh3rf1-202ENSMUST00000209611 Las1lA2BE28 776 aaKnown RBP14.38□□□□□ -0.11
Sh3rf1-202ENSMUST00000209611 Shroom4Q1W617 1475 aa14.37□□□□□ -0.11
Sh3rf1-202ENSMUST00000209611 NrkQ9R0G8 1455 aa14.37□□□□□ -0.11
Sh3rf1-202ENSMUST00000209611 PtprkP35822 1457 aa14.36□□□□□ -0.11
Sh3rf1-202ENSMUST00000209611 LrpprcQ6PB66 1392 aaKnown RBP14.34□□□□□ -0.11
Sh3rf1-202ENSMUST00000209611 Grin2bQ01097 1482 aa14.34□□□□□ -0.11
Sh3rf1-202ENSMUST00000209611 Eea1Q8BL66 1411 aa14.33□□□□□ -0.12
Sh3rf1-202ENSMUST00000209611 Fam135aQ6NS59 1506 aa14.33□□□□□ -0.12
Sh3rf1-202ENSMUST00000209611 Setd5Q5XJV7 1441 aa14.33□□□□□ -0.12
Sh3rf1-202ENSMUST00000209611 Arhgap35Q91YM2 1499 aa14.33□□□□□ -0.12
Sh3rf1-202ENSMUST00000209611 DiexfQ8BTT6 772 aaKnown RBP14.31□□□□□ -0.12
Sh3rf1-202ENSMUST00000209611 Baz1bQ9Z277 1479 aa14.3□□□□□ -0.12
Sh3rf1-202ENSMUST00000209611 Eif4g1Q6NZJ6 1600 aaKnown RBP14.27□□□□□ -0.13
Sh3rf1-202ENSMUST00000209611 Efcab5A0JP43 1406 aa14.26□□□□□ -0.13
Sh3rf1-202ENSMUST00000209611 Dhx29Q6PGC1 1365 aaKnown RBP14.25□□□□□ -0.13
Sh3rf1-202ENSMUST00000209611 Map3k1P53349 1493 aa14.23□□□□□ -0.13
Sh3rf1-202ENSMUST00000209611 PogzQ8BZH4 1409 aaKnown RBP14.23□□□□□ -0.13
Sh3rf1-202ENSMUST00000209611 Duox2A2AQ99 1517 aa14.22□□□□□ -0.13
Sh3rf1-202ENSMUST00000209611 Mroh2bQ7M6Y6 1581 aa14.21□□□□□ -0.14
Sh3rf1-202ENSMUST00000209611 Mrc2Q64449 1479 aa14.19□□□□□ -0.14
Sh3rf1-202ENSMUST00000209611 Dnajc5bQ9CQ94 199 aa14.19□□□□□ -0.14
Sh3rf1-202ENSMUST00000209611 Carmil1Q6EDY6 1374 aa14.19□□□□□ -0.14
Sh3rf1-202ENSMUST00000209611 Lmod2Q3UHZ5 550 aa14.18□□□□□ -0.14
Sh3rf1-202ENSMUST00000209611 BlmO88700 1416 aa14.16□□□□□ -0.14
Sh3rf1-202ENSMUST00000209611 Pcgf6Q99NA9 353 aa14.12□□□□□ -0.15
Sh3rf1-202ENSMUST00000209611 Arap1Q4LDD4 1452 aa14.1□□□□□ -0.15
Sh3rf1-202ENSMUST00000209611 AqrQ8CFQ3 1481 aaKnown RBP14.1□□□□□ -0.15
Sh3rf1-202ENSMUST00000209611 Fam50aQ9WV03 339 aaKnown RBP14.08□□□□□ -0.16
Retrieved 100 of 22,080 RNA–protein pairs in 139.4 ms