RNA–Protein interactions for RNA: ENSMUST00000187758.6

Usp40-204, Transcript of Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Usp40, Length 3,977 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40-204ENSMUST00000187758 NischQ80TM9 1593 aa15.57■□□□□ 0.08
Usp40-204ENSMUST00000187758 Gm35339A0A140LHH9 1649 aa15.47■□□□□ 0.07
Usp40-204ENSMUST00000187758 Abcc9P70170 1546 aa15.08■□□□□ 0
Usp40-204ENSMUST00000187758 Abcc8B2RUS7 1588 aa14.89□□□□□ -0.03
Usp40-204ENSMUST00000187758 Rhox8Q6VSS7 320 aa14.08□□□□□ -0.15
Usp40-204ENSMUST00000187758 ScribQ80U72 1612 aa14.07□□□□□ -0.16
Usp40-204ENSMUST00000187758 Dcaf1Q80TR8 1506 aa13.82□□□□□ -0.2
Usp40-204ENSMUST00000187758 Kdm5dQ62240 1548 aa13.75□□□□□ -0.21
Usp40-204ENSMUST00000187758 NacadQ5SWP3 1504 aa13.74□□□□□ -0.21
Usp40-204ENSMUST00000187758 Rb1cc1Q9ESK9 1588 aa13.62□□□□□ -0.23
Usp40-204ENSMUST00000187758 Baz1aO88379 1555 aa13.44□□□□□ -0.26
Usp40-204ENSMUST00000187758 Sycp2Q9CUU3 1500 aa13.43□□□□□ -0.26
Usp40-204ENSMUST00000187758 Ccdc180J3QNE4 1664 aa13.42□□□□□ -0.26
Usp40-204ENSMUST00000187758 Rtl1Q7M732 1744 aa13.4□□□□□ -0.26
Usp40-204ENSMUST00000187758 Crybg2B7ZCC2 1516 aa13.28□□□□□ -0.28
Usp40-204ENSMUST00000187758 Zcchc6Q5BLK4 1491 aaKnown RBP13.26□□□□□ -0.29
Usp40-204ENSMUST00000187758 BicraF8VPZ9 1578 aa13.14□□□□□ -0.31
Usp40-204ENSMUST00000187758 Smarca2Q6DIC0 1577 aa13.07□□□□□ -0.32
Usp40-204ENSMUST00000187758 Ccdc136Q3TVA9 1136 aa13.06□□□□□ -0.32
Usp40-204ENSMUST00000187758 Cecr2E9Q2Z1 1453 aa12.87□□□□□ -0.35
Usp40-204ENSMUST00000187758 Trim41Q5NCC3 630 aa12.87□□□□□ -0.35
Usp40-204ENSMUST00000187758 Brd4Q9ESU6 1400 aaKnown RBP12.81□□□□□ -0.36
Usp40-204ENSMUST00000187758 Smarca4Q3TKT4 1613 aaKnown RBP12.77□□□□□ -0.36
Usp40-204ENSMUST00000187758 Pds5bQ4VA53 1446 aaKnown RBP12.76□□□□□ -0.37
Usp40-204ENSMUST00000187758 Atad2bE9Q166 1460 aaKnown RBP12.71□□□□□ -0.37
Usp40-204ENSMUST00000187758 Synj1Q8CHC4 1574 aa12.69□□□□□ -0.38
Usp40-204ENSMUST00000187758 CftrP26361 1476 aa12.67□□□□□ -0.38
Usp40-204ENSMUST00000187758 Iqgap2Q3UQ44 1575 aa12.65□□□□□ -0.38
Usp40-204ENSMUST00000187758 Esf1Q3V1V3 845 aaKnown RBP12.64□□□□□ -0.39
Usp40-204ENSMUST00000187758 Cttnbp2B9EJA2 1648 aa12.64□□□□□ -0.39
Usp40-204ENSMUST00000187758 Cngb1E1AZ71 1325 aa12.58□□□□□ -0.4
Usp40-204ENSMUST00000187758 Ercc6F8VPZ5 1481 aa12.54□□□□□ -0.4
Usp40-204ENSMUST00000187758 HrcG5E8J6 738 aa12.52□□□□□ -0.41
Usp40-204ENSMUST00000187758 Golga3P55937 1487 aa12.51□□□□□ -0.41
Usp40-204ENSMUST00000187758 Wdr62Q3U3T8 1523 aa12.45□□□□□ -0.42
Usp40-204ENSMUST00000187758 Frmpd1A2AKB4 1549 aa12.44□□□□□ -0.42
Usp40-204ENSMUST00000187758 Thoc2B1AZI6 1594 aaKnown RBP12.41□□□□□ -0.42
Usp40-204ENSMUST00000187758 Top2bQ64511 1612 aa12.36□□□□□ -0.43
Usp40-204ENSMUST00000187758 Phldb1Q6PDH0 1371 aaKnown RBP12.31□□□□□ -0.44
Usp40-204ENSMUST00000187758 Cep164Q5DU05 1446 aa12.29□□□□□ -0.44
Usp40-204ENSMUST00000187758 Rsf1E9PWW9 1441 aaKnown RBP12.29□□□□□ -0.44
Usp40-204ENSMUST00000187758 Cc2d2aQ8CFW7 1633 aa12.29□□□□□ -0.44
Usp40-204ENSMUST00000187758 Chic1Q8CBW7 227 aa12.28□□□□□ -0.44
Usp40-204ENSMUST00000187758 Ccdc88bQ4QRL3 1481 aa12.27□□□□□ -0.44
Usp40-204ENSMUST00000187758 Fmn1Q05860 1466 aa12.27□□□□□ -0.45
Usp40-204ENSMUST00000187758 Fam135aQ6NS59 1506 aa12.24□□□□□ -0.45
Usp40-204ENSMUST00000187758 Unc13aQ4KUS2 1712 aa12.24□□□□□ -0.45
Usp40-204ENSMUST00000187758 Ubl4bQ9CQ84 188 aa12.24□□□□□ -0.45
Usp40-204ENSMUST00000187758 Kif15Q6P9L6 1387 aa12.23□□□□□ -0.45
Usp40-204ENSMUST00000187758 Dnajc5bQ9CQ94 199 aa12.19□□□□□ -0.46
Usp40-204ENSMUST00000187758 Lamc3Q9R0B6 1581 aa12.18□□□□□ -0.46
Usp40-204ENSMUST00000187758 Gab3Q8BSM5 595 aa12.17□□□□□ -0.46
Usp40-204ENSMUST00000187758 TnnQ80Z71 1560 aa12.15□□□□□ -0.46
Usp40-204ENSMUST00000187758 Il27Q8K3I6 234 aa12.12□□□□□ -0.47
Usp40-204ENSMUST00000187758 Cux2P70298 1426 aa12.1□□□□□ -0.47
Usp40-204ENSMUST00000187758 Baz1bQ9Z277 1479 aa12.09□□□□□ -0.47
Usp40-204ENSMUST00000187758 Top2aQ01320 1528 aaKnown RBP12.09□□□□□ -0.47
Usp40-204ENSMUST00000187758 Ccdc18Q640L5 1455 aa12.08□□□□□ -0.48
Usp40-204ENSMUST00000187758 Npm1Q61937 292 aaKnown RBP12.07□□□□□ -0.48
Usp40-204ENSMUST00000187758 Camsap1A2AHC3 1581 aa12.03□□□□□ -0.48
Usp40-204ENSMUST00000187758 Mrc2Q64449 1479 aa12.01□□□□□ -0.49
Usp40-204ENSMUST00000187758 Npm2Q80W85 207 aa12□□□□□ -0.49
Usp40-204ENSMUST00000187758 Rapgef2Q8CHG7 1496 aa11.93□□□□□ -0.5
Usp40-204ENSMUST00000187758 LrpprcQ6PB66 1392 aaKnown RBP11.92□□□□□ -0.5
Usp40-204ENSMUST00000187758 Grin2bQ01097 1482 aa11.91□□□□□ -0.5
Usp40-204ENSMUST00000187758 NrkQ9R0G8 1455 aa11.89□□□□□ -0.51
Usp40-204ENSMUST00000187758 Zeb1Q64318 1117 aa11.88□□□□□ -0.51
Usp40-204ENSMUST00000187758 Shroom4Q1W617 1475 aa11.88□□□□□ -0.51
Usp40-204ENSMUST00000187758 Myt1lP97500 1187 aa11.88□□□□□ -0.51
Usp40-204ENSMUST00000187758 Dhx29Q6PGC1 1365 aaKnown RBP11.87□□□□□ -0.51
Usp40-204ENSMUST00000187758 PogzQ8BZH4 1409 aaKnown RBP11.86□□□□□ -0.51
Usp40-204ENSMUST00000187758 Cep162Q6ZQ06 1403 aa11.86□□□□□ -0.51
Usp40-204ENSMUST00000187758 PtprkP35822 1457 aa11.85□□□□□ -0.51
Usp40-204ENSMUST00000187758 Kif21aQ9QXL2 1672 aa11.85□□□□□ -0.51
Usp40-204ENSMUST00000187758 Duox2A2AQ99 1517 aa11.83□□□□□ -0.52
Usp40-204ENSMUST00000187758 Efcab5A0JP43 1406 aa11.82□□□□□ -0.52
Usp40-204ENSMUST00000187758 Ehmt2Q9Z148 1263 aaKnown RBP11.79□□□□□ -0.52
Usp40-204ENSMUST00000187758 Crocc2F6XLV1 1638 aa11.79□□□□□ -0.52
Usp40-204ENSMUST00000187758 Arhgap35Q91YM2 1499 aa11.76□□□□□ -0.53
Usp40-204ENSMUST00000187758 Eif4g1Q6NZJ6 1600 aaKnown RBP11.74□□□□□ -0.53
Usp40-204ENSMUST00000187758 Map3k1P53349 1493 aa11.73□□□□□ -0.53
Usp40-204ENSMUST00000187758 Mroh2bQ7M6Y6 1581 aa11.73□□□□□ -0.53
Usp40-204ENSMUST00000187758 Plb1Q3TTY0 1478 aa11.73□□□□□ -0.53
Usp40-204ENSMUST00000187758 Samd9lQ69Z37 1561 aa11.72□□□□□ -0.53
Usp40-204ENSMUST00000187758 Urb2E9Q7L1 1524 aaKnown RBP11.71□□□□□ -0.54
Usp40-204ENSMUST00000187758 Clip1Q922J3 1391 aa11.7□□□□□ -0.54
Usp40-204ENSMUST00000187758 Lrriq1Q0P5X1 1673 aa11.69□□□□□ -0.54
Usp40-204ENSMUST00000187758 Rad54l2Q99NG0 1466 aa11.68□□□□□ -0.54
Usp40-204ENSMUST00000187758 SynmQ70IV5 1561 aa11.67□□□□□ -0.54
Usp40-204ENSMUST00000187758 Carmil1Q6EDY6 1374 aa11.66□□□□□ -0.54
Usp40-204ENSMUST00000187758 AqrQ8CFQ3 1481 aaKnown RBP11.65□□□□□ -0.54
Usp40-204ENSMUST00000187758 Ift140E9PY46 1464 aa11.65□□□□□ -0.54
Usp40-204ENSMUST00000187758 Rpgrip1Q9EPQ2 1331 aa11.65□□□□□ -0.55
Usp40-204ENSMUST00000187758 Eea1Q8BL66 1411 aa11.61□□□□□ -0.55
Usp40-204ENSMUST00000187758 Disp1Q3TDN0 1521 aa11.61□□□□□ -0.55
Usp40-204ENSMUST00000187758 Setd5Q5XJV7 1441 aa11.6□□□□□ -0.55
Usp40-204ENSMUST00000187758 Grin2aP35436 1464 aa11.59□□□□□ -0.55
Usp40-204ENSMUST00000187758 Ap3b1Q9Z1T1 1105 aa11.58□□□□□ -0.56
Usp40-204ENSMUST00000187758 Magi3Q9EQJ9 1476 aa11.58□□□□□ -0.56
Usp40-204ENSMUST00000187758 Pla2r1Q62028 1487 aa11.57□□□□□ -0.56
Retrieved 100 of 22,080 RNA–protein pairs in 50.2 ms