RNA–Protein interactions for RNA: ENSMUST00000111180.8

Trim50-202, Transcript of E3 ubiquitin-protein ligase TRIM50, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Trim50, Length 1,456 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim50-202ENSMUST00000111180 Gm35339A0A140LHH9 1649 aa27.37■■□□□ 1.97
Trim50-202ENSMUST00000111180 NischQ80TM9 1593 aa26.78■■□□□ 1.88
Trim50-202ENSMUST00000111180 Abcc8B2RUS7 1588 aa25.98■■□□□ 1.75
Trim50-202ENSMUST00000111180 Abcc9P70170 1546 aa25.92■■□□□ 1.74
Trim50-202ENSMUST00000111180 ScribQ80U72 1612 aa25.35■■□□□ 1.65
Trim50-202ENSMUST00000111180 NacadQ5SWP3 1504 aa24.38■■□□□ 1.49
Trim50-202ENSMUST00000111180 Kdm5dQ62240 1548 aa24.38■■□□□ 1.49
Trim50-202ENSMUST00000111180 Sycp2Q9CUU3 1500 aa23.94■■□□□ 1.42
Trim50-202ENSMUST00000111180 Dcaf1Q80TR8 1506 aa23.86■■□□□ 1.41
Trim50-202ENSMUST00000111180 BicraF8VPZ9 1578 aa23.71■■□□□ 1.39
Trim50-202ENSMUST00000111180 Dnajc5bQ9CQ94 199 aa23.5■■□□□ 1.35
Trim50-202ENSMUST00000111180 Rb1cc1Q9ESK9 1588 aa23.36■■□□□ 1.33
Trim50-202ENSMUST00000111180 Rhox8Q6VSS7 320 aa23.25■■□□□ 1.31
Trim50-202ENSMUST00000111180 Thoc2B1AZI6 1594 aaKnown RBP23.07■■□□□ 1.28
Trim50-202ENSMUST00000111180 Pds5bQ4VA53 1446 aaKnown RBP23.06■■□□□ 1.28
Trim50-202ENSMUST00000111180 Ccdc180J3QNE4 1664 aa22.99■■□□□ 1.27
Trim50-202ENSMUST00000111180 Baz1aO88379 1555 aa22.97■■□□□ 1.27
Trim50-202ENSMUST00000111180 Crybg2B7ZCC2 1516 aa22.86■■□□□ 1.25
Trim50-202ENSMUST00000111180 Zcchc6Q5BLK4 1491 aaKnown RBP22.82■■□□□ 1.24
Trim50-202ENSMUST00000111180 Atad2bE9Q166 1460 aaKnown RBP22.76■■□□□ 1.23
Trim50-202ENSMUST00000111180 Cc2d2aQ8CFW7 1633 aa22.65■■□□□ 1.22
Trim50-202ENSMUST00000111180 Rtl1Q7M732 1744 aa22.61■■□□□ 1.21
Trim50-202ENSMUST00000111180 Ercc6F8VPZ5 1481 aa22.58■■□□□ 1.21
Trim50-202ENSMUST00000111180 Smarca2Q6DIC0 1577 aa22.5■■□□□ 1.19
Trim50-202ENSMUST00000111180 Smarca4Q3TKT4 1613 aaKnown RBP22.5■■□□□ 1.19
Trim50-202ENSMUST00000111180 Fam135aQ6NS59 1506 aa22.45■■□□□ 1.18
Trim50-202ENSMUST00000111180 Iqgap2Q3UQ44 1575 aa22.43■■□□□ 1.18
Trim50-202ENSMUST00000111180 Cecr2E9Q2Z1 1453 aa22.37■■□□□ 1.17
Trim50-202ENSMUST00000111180 Wdr62Q3U3T8 1523 aa22.29■■□□□ 1.16
Trim50-202ENSMUST00000111180 Frmpd1A2AKB4 1549 aa22.22■■□□□ 1.15
Trim50-202ENSMUST00000111180 Phldb1Q6PDH0 1371 aaKnown RBP22.21■■□□□ 1.15
Trim50-202ENSMUST00000111180 Ubl4bQ9CQ84 188 aa22.18■■□□□ 1.14
Trim50-202ENSMUST00000111180 Baz1bQ9Z277 1479 aa22.09■■□□□ 1.13
Trim50-202ENSMUST00000111180 Unc13aQ4KUS2 1712 aa22.05■■□□□ 1.12
Trim50-202ENSMUST00000111180 Mrc2Q64449 1479 aa21.88■■□□□ 1.09
Trim50-202ENSMUST00000111180 Cttnbp2B9EJA2 1648 aa21.79■■□□□ 1.08
Trim50-202ENSMUST00000111180 Ccdc136Q3TVA9 1136 aa21.78■■□□□ 1.08
Trim50-202ENSMUST00000111180 CftrP26361 1476 aa21.78■■□□□ 1.08
Trim50-202ENSMUST00000111180 Synj1Q8CHC4 1574 aa21.71■■□□□ 1.07
Trim50-202ENSMUST00000111180 Brd4Q9ESU6 1400 aaKnown RBP21.7■■□□□ 1.06
Trim50-202ENSMUST00000111180 Esf1Q3V1V3 845 aaKnown RBP21.68■■□□□ 1.06
Trim50-202ENSMUST00000111180 Trim41Q5NCC3 630 aa21.67■■□□□ 1.06
Trim50-202ENSMUST00000111180 Dnajc5P60904 198 aa21.52■■□□□ 1.03
Trim50-202ENSMUST00000111180 Lrriq1Q0P5X1 1673 aa21.51■■□□□ 1.03
Trim50-202ENSMUST00000111180 Cux2P70298 1426 aa21.47■■□□□ 1.03
Trim50-202ENSMUST00000111180 Kif15Q6P9L6 1387 aa21.45■■□□□ 1.02
Trim50-202ENSMUST00000111180 Rsf1E9PWW9 1441 aaKnown RBP21.43■■□□□ 1.02
Trim50-202ENSMUST00000111180 Kif21aQ9QXL2 1672 aa21.38■■□□□ 1.01
Trim50-202ENSMUST00000111180 Npm1Q61937 292 aaKnown RBP21.36■■□□□ 1.01
Trim50-202ENSMUST00000111180 Eif4g3Q80XI3 1579 aaKnown RBP21.2■□□□□ 0.98
Trim50-202ENSMUST00000111180 Lamc3Q9R0B6 1581 aa21.2■□□□□ 0.98
Trim50-202ENSMUST00000111180 Il27Q8K3I6 234 aa21.15■□□□□ 0.98
Trim50-202ENSMUST00000111180 Cep164Q5DU05 1446 aa21.15■□□□□ 0.98
Trim50-202ENSMUST00000111180 Shroom2A2ALU4 1481 aa21.03■□□□□ 0.96
Trim50-202ENSMUST00000111180 Golga3P55937 1487 aa21.02■□□□□ 0.96
Trim50-202ENSMUST00000111180 Cngb1E1AZ71 1325 aa20.99■□□□□ 0.95
Trim50-202ENSMUST00000111180 Dhx29Q6PGC1 1365 aaKnown RBP20.98■□□□□ 0.95
Trim50-202ENSMUST00000111180 Urb2E9Q7L1 1524 aaKnown RBP20.98■□□□□ 0.95
Trim50-202ENSMUST00000111180 Top2bQ64511 1612 aa20.98■□□□□ 0.95
Trim50-202ENSMUST00000111180 Ccdc18Q640L5 1455 aa20.97■□□□□ 0.95
Trim50-202ENSMUST00000111180 Plb1Q3TTY0 1478 aa20.95■□□□□ 0.94
Trim50-202ENSMUST00000111180 TnnQ80Z71 1560 aa20.92■□□□□ 0.94
Trim50-202ENSMUST00000111180 LrpprcQ6PB66 1392 aaKnown RBP20.9■□□□□ 0.94
Trim50-202ENSMUST00000111180 Pabpn1Q8CCS6 302 aaKnown RBP20.89■□□□□ 0.94
Trim50-202ENSMUST00000111180 Crocc2F6XLV1 1638 aa20.85■□□□□ 0.93
Trim50-202ENSMUST00000111180 Pelp1Q9DBD5 1123 aaKnown RBP20.82■□□□□ 0.92
Trim50-202ENSMUST00000111180 Camsap1A2AHC3 1581 aa20.82■□□□□ 0.92
Trim50-202ENSMUST00000111180 Col17a1Q07563 1470 aa20.79■□□□□ 0.92
Trim50-202ENSMUST00000111180 HrcG5E8J6 738 aa20.78■□□□□ 0.92
Trim50-202ENSMUST00000111180 Rusc2Q80U22 1514 aa20.75■□□□□ 0.91
Trim50-202ENSMUST00000111180 PogzQ8BZH4 1409 aaKnown RBP20.71■□□□□ 0.91
Trim50-202ENSMUST00000111180 Ift140E9PY46 1464 aa20.7■□□□□ 0.91
Trim50-202ENSMUST00000111180 Fmn1Q05860 1466 aa20.69■□□□□ 0.9
Trim50-202ENSMUST00000111180 Duox2A2AQ99 1517 aa20.63■□□□□ 0.89
Trim50-202ENSMUST00000111180 Zcchc11B2RX14 1644 aaKnown RBP20.54■□□□□ 0.88
Trim50-202ENSMUST00000111180 Ccdc88bQ4QRL3 1481 aa20.54■□□□□ 0.88
Trim50-202ENSMUST00000111180 Disp1Q3TDN0 1521 aa20.53■□□□□ 0.88
Trim50-202ENSMUST00000111180 Setd1bQ8CFT2 1985 aa20.5■□□□□ 0.87
Trim50-202ENSMUST00000111180 Grin2bQ01097 1482 aa20.5■□□□□ 0.87
Trim50-202ENSMUST00000111180 Pbrm1Q8BSQ9 1634 aaKnown RBP20.48■□□□□ 0.87
Trim50-202ENSMUST00000111180 Samd9lQ69Z37 1561 aa20.47■□□□□ 0.87
Trim50-202ENSMUST00000111180 Cc2d2bA0A286YDU8 1405 aa20.44■□□□□ 0.86
Trim50-202ENSMUST00000111180 Top2aQ01320 1528 aaKnown RBP20.44■□□□□ 0.86
Trim50-202ENSMUST00000111180 Efcab5A0JP43 1406 aa20.42■□□□□ 0.86
Trim50-202ENSMUST00000111180 Nup160Q9Z0W3 1402 aaKnown RBP20.41■□□□□ 0.86
Trim50-202ENSMUST00000111180 Chic1Q8CBW7 227 aa20.38■□□□□ 0.85
Trim50-202ENSMUST00000111180 Rad54l2Q99NG0 1466 aa20.37■□□□□ 0.85
Trim50-202ENSMUST00000111180 Ttbk1Q6PCN3 1308 aa20.36■□□□□ 0.85
Trim50-202ENSMUST00000111180 Fgd6Q69ZL1 1399 aa20.31■□□□□ 0.84
Trim50-202ENSMUST00000111180 Grin2aP35436 1464 aa20.27■□□□□ 0.84
Trim50-202ENSMUST00000111180 PtprkP35822 1457 aa20.27■□□□□ 0.84
Trim50-202ENSMUST00000111180 Adgrl3Q80TS3 1537 aa20.26■□□□□ 0.83
Trim50-202ENSMUST00000111180 AqrQ8CFQ3 1481 aaKnown RBP20.26■□□□□ 0.83
Trim50-202ENSMUST00000111180 Gm156Q58A37 223 aa20.25■□□□□ 0.83
Trim50-202ENSMUST00000111180 Zeb1Q64318 1117 aa20.25■□□□□ 0.83
Trim50-202ENSMUST00000111180 Cep170Q6A065 1588 aa20.25■□□□□ 0.83
Trim50-202ENSMUST00000111180 Magi3Q9EQJ9 1476 aa20.25■□□□□ 0.83
Trim50-202ENSMUST00000111180 Pcdh10E9PXQ7 1057 aa20.24■□□□□ 0.83
Trim50-202ENSMUST00000111180 Arhgef5E9Q7D5 1581 aa20.24■□□□□ 0.83
Trim50-202ENSMUST00000111180 AknaQ80VW7 1404 aa20.23■□□□□ 0.83
Retrieved 100 of 22,080 RNA–protein pairs in 119.8 ms