RNA–Protein interactions for RNA: ENSMUST00000110520.9

Trim9-201, Transcript of E3 ubiquitin-protein ligase TRIM9, mousemouse

TSL 1 (best) BASIC

Gene Trim9, Length 4,156 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9-201ENSMUST00000110520 Rhox8Q6VSS7 320 aa17.5■□□□□ 0.39
Trim9-201ENSMUST00000110520 NischQ80TM9 1593 aa16.76■□□□□ 0.27
Trim9-201ENSMUST00000110520 Ccdc136Q3TVA9 1136 aa16.01■□□□□ 0.15
Trim9-201ENSMUST00000110520 Ehmt2Q9Z148 1263 aaKnown RBP16.01■□□□□ 0.15
Trim9-201ENSMUST00000110520 Abcc9P70170 1546 aa15.88■□□□□ 0.13
Trim9-201ENSMUST00000110520 Abcc8B2RUS7 1588 aa15.6■□□□□ 0.09
Trim9-201ENSMUST00000110520 Cngb1E1AZ71 1325 aa15.43■□□□□ 0.06
Trim9-201ENSMUST00000110520 Trim41Q5NCC3 630 aa15.42■□□□□ 0.06
Trim9-201ENSMUST00000110520 Gm35339A0A140LHH9 1649 aa15.41■□□□□ 0.06
Trim9-201ENSMUST00000110520 Gab3Q8BSM5 595 aa15.4■□□□□ 0.06
Trim9-201ENSMUST00000110520 Rpgrip1Q9EPQ2 1331 aa15.33■□□□□ 0.04
Trim9-201ENSMUST00000110520 Esf1Q3V1V3 845 aaKnown RBP15.28■□□□□ 0.04
Trim9-201ENSMUST00000110520 Ccdc180J3QNE4 1664 aa15.17■□□□□ 0.02
Trim9-201ENSMUST00000110520 Rtl1Q7M732 1744 aa15.07■□□□□ 0
Trim9-201ENSMUST00000110520 Zcchc6Q5BLK4 1491 aaKnown RBP15.05■□□□□ -0
Trim9-201ENSMUST00000110520 Acin1Q9JIX8 1338 aaKnown RBP15.02□□□□□ -0.01
Trim9-201ENSMUST00000110520 HrcG5E8J6 738 aa15.01□□□□□ -0.01
Trim9-201ENSMUST00000110520 Zeb1Q64318 1117 aa14.97□□□□□ -0.01
Trim9-201ENSMUST00000110520 Myt1lP97500 1187 aa14.93□□□□□ -0.02
Trim9-201ENSMUST00000110520 Npm2Q80W85 207 aa14.81□□□□□ -0.04
Trim9-201ENSMUST00000110520 UbtfP25976 765 aaKnown RBP14.74□□□□□ -0.05
Trim9-201ENSMUST00000110520 Wdr66E9Q743 1299 aa14.74□□□□□ -0.05
Trim9-201ENSMUST00000110520 Rb1cc1Q9ESK9 1588 aa14.7□□□□□ -0.06
Trim9-201ENSMUST00000110520 Dcaf1Q80TR8 1506 aa14.62□□□□□ -0.07
Trim9-201ENSMUST00000110520 Il27Q8K3I6 234 aa14.62□□□□□ -0.07
Trim9-201ENSMUST00000110520 Chic1Q8CBW7 227 aa14.61□□□□□ -0.07
Trim9-201ENSMUST00000110520 Pcgf6Q99NA9 353 aa14.6□□□□□ -0.07
Trim9-201ENSMUST00000110520 Las1lA2BE28 776 aaKnown RBP14.56□□□□□ -0.08
Trim9-201ENSMUST00000110520 Ppargc1bQ8VHJ7 1014 aa14.49□□□□□ -0.09
Trim9-201ENSMUST00000110520 Supt5hO55201 1082 aaKnown RBP14.48□□□□□ -0.09
Trim9-201ENSMUST00000110520 NefmP08553 848 aa14.42□□□□□ -0.1
Trim9-201ENSMUST00000110520 Ap3b1Q9Z1T1 1105 aa14.41□□□□□ -0.1
Trim9-201ENSMUST00000110520 Ube2uB1AUC4 352 aa14.41□□□□□ -0.1
Trim9-201ENSMUST00000110520 Mier1Q5UAK0 511 aa14.41□□□□□ -0.1
Trim9-201ENSMUST00000110520 Kdm5dQ62240 1548 aa14.4□□□□□ -0.1
Trim9-201ENSMUST00000110520 NacadQ5SWP3 1504 aa14.38□□□□□ -0.11
Trim9-201ENSMUST00000110520 Baz1aO88379 1555 aa14.37□□□□□ -0.11
Trim9-201ENSMUST00000110520 Cep164Q5DU05 1446 aa14.31□□□□□ -0.12
Trim9-201ENSMUST00000110520 Brd4Q9ESU6 1400 aaKnown RBP14.28□□□□□ -0.12
Trim9-201ENSMUST00000110520 ScribQ80U72 1612 aa14.26□□□□□ -0.13
Trim9-201ENSMUST00000110520 Plekhg3Q4VAC9 1341 aa14.26□□□□□ -0.13
Trim9-201ENSMUST00000110520 Rsf1E9PWW9 1441 aaKnown RBP14.16□□□□□ -0.14
Trim9-201ENSMUST00000110520 Fam50aQ9WV03 339 aaKnown RBP14.15□□□□□ -0.14
Trim9-201ENSMUST00000110520 Lmod2Q3UHZ5 550 aa14.08□□□□□ -0.16
Trim9-201ENSMUST00000110520 Eid3Q3V124 375 aa14.05□□□□□ -0.16
Trim9-201ENSMUST00000110520 Sall2Q9QX96 1004 aa14.05□□□□□ -0.16
Trim9-201ENSMUST00000110520 Ccdc88bQ4QRL3 1481 aa14.04□□□□□ -0.16
Trim9-201ENSMUST00000110520 Golga3P55937 1487 aa14.03□□□□□ -0.16
Trim9-201ENSMUST00000110520 Slc24a1Q91WD8 1130 aa14.01□□□□□ -0.17
Trim9-201ENSMUST00000110520 TonslQ6NZL6 1363 aa14□□□□□ -0.17
Trim9-201ENSMUST00000110520 Cdk11bP24788 784 aaKnown RBP14□□□□□ -0.17
Trim9-201ENSMUST00000110520 Cecr2E9Q2Z1 1453 aa13.98□□□□□ -0.17
Trim9-201ENSMUST00000110520 Nop58Q6DFW4 536 aaKnown RBP13.98□□□□□ -0.17
Trim9-201ENSMUST00000110520 Neurod1Q60867 357 aa13.97□□□□□ -0.17
Trim9-201ENSMUST00000110520 Clip1Q922J3 1391 aa13.96□□□□□ -0.17
Trim9-201ENSMUST00000110520 Mapk8ip2Q9ERE9 830 aa13.95□□□□□ -0.18
Trim9-201ENSMUST00000110520 Npm1Q61937 292 aaKnown RBP13.94□□□□□ -0.18
Trim9-201ENSMUST00000110520 Sycp2Q9CUU3 1500 aa13.93□□□□□ -0.18
Trim9-201ENSMUST00000110520 NclP09405 707 aaKnown RBP13.92□□□□□ -0.18
Trim9-201ENSMUST00000110520 Smarca2Q6DIC0 1577 aa13.85□□□□□ -0.19
Trim9-201ENSMUST00000110520 Aebp2Q9Z248 504 aaKnown RBP13.85□□□□□ -0.19
Trim9-201ENSMUST00000110520 Ubl4bQ9CQ84 188 aa13.79□□□□□ -0.2
Trim9-201ENSMUST00000110520 ClspnQ80YR7 1315 aa13.78□□□□□ -0.2
Trim9-201ENSMUST00000110520 Crybg2B7ZCC2 1516 aa13.75□□□□□ -0.21
Trim9-201ENSMUST00000110520 Gm38655A0A286YDK6 273 aa13.74□□□□□ -0.21
Trim9-201ENSMUST00000110520 CftrP26361 1476 aa13.74□□□□□ -0.21
Trim9-201ENSMUST00000110520 Synj1Q8CHC4 1574 aa13.73□□□□□ -0.21
Trim9-201ENSMUST00000110520 Kif15Q6P9L6 1387 aa13.71□□□□□ -0.21
Trim9-201ENSMUST00000110520 Zbtb7cQ8VCZ7 619 aa13.71□□□□□ -0.21
Trim9-201ENSMUST00000110520 Setd5Q5XJV7 1441 aa13.68□□□□□ -0.22
Trim9-201ENSMUST00000110520 CenpbP27790 599 aa13.67□□□□□ -0.22
Trim9-201ENSMUST00000110520 BlmO88700 1416 aa13.66□□□□□ -0.22
Trim9-201ENSMUST00000110520 Csrnp3P59055 597 aa13.66□□□□□ -0.22
Trim9-201ENSMUST00000110520 Chic2Q9D9G3 165 aa13.65□□□□□ -0.22
Trim9-201ENSMUST00000110520 Eif5bQ05D44 1216 aaKnown RBP13.62□□□□□ -0.23
Trim9-201ENSMUST00000110520 Fkbp15Q6P9Q6 1216 aaKnown RBP13.61□□□□□ -0.23
Trim9-201ENSMUST00000110520 Cep162Q6ZQ06 1403 aa13.6□□□□□ -0.23
Trim9-201ENSMUST00000110520 Stra8P70278 393 aa13.57□□□□□ -0.24
Trim9-201ENSMUST00000110520 Zbtb4Q5F293 982 aa13.56□□□□□ -0.24
Trim9-201ENSMUST00000110520 Rapgef2Q8CHG7 1496 aa13.54□□□□□ -0.24
Trim9-201ENSMUST00000110520 Fmn1Q05860 1466 aa13.54□□□□□ -0.24
Trim9-201ENSMUST00000110520 Anks4bQ8K3X6 423 aa13.53□□□□□ -0.24
Trim9-201ENSMUST00000110520 Ifnlr1Q8CGK5 535 aa13.52□□□□□ -0.25
Trim9-201ENSMUST00000110520 Eea1Q8BL66 1411 aa13.52□□□□□ -0.25
Trim9-201ENSMUST00000110520 NrdcQ8BHG1 1161 aa13.48□□□□□ -0.25
Trim9-201ENSMUST00000110520 Hnrnpul2Q00PI9 745 aaKnown RBP13.44□□□□□ -0.26
Trim9-201ENSMUST00000110520 Smarca4Q3TKT4 1613 aaKnown RBP13.43□□□□□ -0.26
Trim9-201ENSMUST00000110520 Pds5bQ4VA53 1446 aaKnown RBP13.42□□□□□ -0.26
Trim9-201ENSMUST00000110520 Ercc6F8VPZ5 1481 aa13.42□□□□□ -0.26
Trim9-201ENSMUST00000110520 Tnnt3Q9QZ47 272 aa13.41□□□□□ -0.26
Trim9-201ENSMUST00000110520 Ccdc18Q640L5 1455 aa13.4□□□□□ -0.26
Trim9-201ENSMUST00000110520 Cttnbp2B9EJA2 1648 aa13.38□□□□□ -0.27
Trim9-201ENSMUST00000110520 BicraF8VPZ9 1578 aa13.38□□□□□ -0.27
Trim9-201ENSMUST00000110520 Hspa5P20029 655 aaKnown RBP13.37□□□□□ -0.27
Trim9-201ENSMUST00000110520 Os9Q8K2C7 672 aa13.35□□□□□ -0.27
Trim9-201ENSMUST00000110520 1700123L14RikQ3V2K7 440 aa13.35□□□□□ -0.27
Trim9-201ENSMUST00000110520 Atad2bE9Q166 1460 aaKnown RBP13.35□□□□□ -0.27
Trim9-201ENSMUST00000110520 Cc2d2aQ8CFW7 1633 aa13.34□□□□□ -0.27
Trim9-201ENSMUST00000110520 Iqgap2Q3UQ44 1575 aa13.3□□□□□ -0.28
Trim9-201ENSMUST00000110520 Ccer2J3QPU5 274 aa13.29□□□□□ -0.28
Retrieved 100 of 22,080 RNA–protein pairs in 43.4 ms