RNA–Protein interactions for RNA: ENSMUST00000087158.10

Trim40-201, Transcript of Tripartite motif-containing protein 40, mousemouse

APPRIS P3 TSL 1 (best) BASIC

Gene Trim40, Length 2,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40-201ENSMUST00000087158 NischQ80TM9 1593 aa15.4■□□□□ 0.06
Trim40-201ENSMUST00000087158 Gm35339A0A140LHH9 1649 aa15.32■□□□□ 0.04
Trim40-201ENSMUST00000087158 Chic1Q8CBW7 227 aa15.07■□□□□ 0
Trim40-201ENSMUST00000087158 Abcc9P70170 1546 aa14.94□□□□□ -0.02
Trim40-201ENSMUST00000087158 Abcc8B2RUS7 1588 aa14.71□□□□□ -0.06
Trim40-201ENSMUST00000087158 Mapk8ip2Q9ERE9 830 aa14.3□□□□□ -0.12
Trim40-201ENSMUST00000087158 Rhox8Q6VSS7 320 aa13.88□□□□□ -0.19
Trim40-201ENSMUST00000087158 ScribQ80U72 1612 aa13.83□□□□□ -0.2
Trim40-201ENSMUST00000087158 Plppr3Q7TPB0 716 aa13.82□□□□□ -0.2
Trim40-201ENSMUST00000087158 Dcaf1Q80TR8 1506 aa13.72□□□□□ -0.21
Trim40-201ENSMUST00000087158 Phf23Q8BSN5 401 aa13.65□□□□□ -0.22
Trim40-201ENSMUST00000087158 Rtl1Q7M732 1744 aa13.57□□□□□ -0.24
Trim40-201ENSMUST00000087158 Kdm5dQ62240 1548 aa13.51□□□□□ -0.25
Trim40-201ENSMUST00000087158 NacadQ5SWP3 1504 aa13.48□□□□□ -0.25
Trim40-201ENSMUST00000087158 Rb1cc1Q9ESK9 1588 aa13.46□□□□□ -0.25
Trim40-201ENSMUST00000087158 Ccdc180J3QNE4 1664 aa13.4□□□□□ -0.26
Trim40-201ENSMUST00000087158 Baz1aO88379 1555 aa13.32□□□□□ -0.28
Trim40-201ENSMUST00000087158 Gab3Q8BSM5 595 aa13.3□□□□□ -0.28
Trim40-201ENSMUST00000087158 Kcna4Q61423 654 aa13.22□□□□□ -0.29
Trim40-201ENSMUST00000087158 Crybg2B7ZCC2 1516 aa13.19□□□□□ -0.3
Trim40-201ENSMUST00000087158 Sycp2Q9CUU3 1500 aa13.18□□□□□ -0.3
Trim40-201ENSMUST00000087158 Zcchc6Q5BLK4 1491 aaKnown RBP13.11□□□□□ -0.31
Trim40-201ENSMUST00000087158 Smarca2Q6DIC0 1577 aa12.99□□□□□ -0.33
Trim40-201ENSMUST00000087158 Ccdc136Q3TVA9 1136 aa12.91□□□□□ -0.34
Trim40-201ENSMUST00000087158 BicraF8VPZ9 1578 aa12.91□□□□□ -0.34
Trim40-201ENSMUST00000087158 Ube2uB1AUC4 352 aa12.84□□□□□ -0.35
Trim40-201ENSMUST00000087158 Senp3Q9EP97 568 aaKnown RBP12.82□□□□□ -0.36
Trim40-201ENSMUST00000087158 Trim41Q5NCC3 630 aa12.74□□□□□ -0.37
Trim40-201ENSMUST00000087158 Dnajc5bQ9CQ94 199 aa12.72□□□□□ -0.37
Trim40-201ENSMUST00000087158 Cecr2E9Q2Z1 1453 aa12.7□□□□□ -0.38
Trim40-201ENSMUST00000087158 Brd4Q9ESU6 1400 aaKnown RBP12.67□□□□□ -0.38
Trim40-201ENSMUST00000087158 HrcG5E8J6 738 aa12.65□□□□□ -0.38
Trim40-201ENSMUST00000087158 Smarca4Q3TKT4 1613 aaKnown RBP12.56□□□□□ -0.4
Trim40-201ENSMUST00000087158 Synj1Q8CHC4 1574 aa12.56□□□□□ -0.4
Trim40-201ENSMUST00000087158 CftrP26361 1476 aa12.53□□□□□ -0.4
Trim40-201ENSMUST00000087158 Cttnbp2B9EJA2 1648 aa12.49□□□□□ -0.41
Trim40-201ENSMUST00000087158 Atad2bE9Q166 1460 aaKnown RBP12.43□□□□□ -0.42
Trim40-201ENSMUST00000087158 Pds5bQ4VA53 1446 aaKnown RBP12.42□□□□□ -0.42
Trim40-201ENSMUST00000087158 Golga3P55937 1487 aa12.42□□□□□ -0.42
Trim40-201ENSMUST00000087158 Iqgap2Q3UQ44 1575 aa12.41□□□□□ -0.42
Trim40-201ENSMUST00000087158 Rpgrip1Q9EPQ2 1331 aa12.38□□□□□ -0.43
Trim40-201ENSMUST00000087158 Cngb1E1AZ71 1325 aa12.37□□□□□ -0.43
Trim40-201ENSMUST00000087158 Esf1Q3V1V3 845 aaKnown RBP12.36□□□□□ -0.43
Trim40-201ENSMUST00000087158 Cep164Q5DU05 1446 aa12.36□□□□□ -0.43
Trim40-201ENSMUST00000087158 Top2bQ64511 1612 aa12.34□□□□□ -0.43
Trim40-201ENSMUST00000087158 Thoc2B1AZI6 1594 aaKnown RBP12.29□□□□□ -0.44
Trim40-201ENSMUST00000087158 Ppargc1bQ8VHJ7 1014 aa12.29□□□□□ -0.44
Trim40-201ENSMUST00000087158 Rsf1E9PWW9 1441 aaKnown RBP12.28□□□□□ -0.44
Trim40-201ENSMUST00000087158 Ccdc88bQ4QRL3 1481 aa12.25□□□□□ -0.45
Trim40-201ENSMUST00000087158 Wdr62Q3U3T8 1523 aa12.2□□□□□ -0.46
Trim40-201ENSMUST00000087158 Frmpd1A2AKB4 1549 aa12.19□□□□□ -0.46
Trim40-201ENSMUST00000087158 Cc2d2aQ8CFW7 1633 aa12.18□□□□□ -0.46
Trim40-201ENSMUST00000087158 Ercc6F8VPZ5 1481 aa12.17□□□□□ -0.46
Trim40-201ENSMUST00000087158 Fmn1Q05860 1466 aa12.17□□□□□ -0.46
Trim40-201ENSMUST00000087158 Unc13aQ4KUS2 1712 aa12.06□□□□□ -0.48
Trim40-201ENSMUST00000087158 TnnQ80Z71 1560 aa12.06□□□□□ -0.48
Trim40-201ENSMUST00000087158 Acin1Q9JIX8 1338 aaKnown RBP12.06□□□□□ -0.48
Trim40-201ENSMUST00000087158 Top2aQ01320 1528 aaKnown RBP12.05□□□□□ -0.48
Trim40-201ENSMUST00000087158 Lamc3Q9R0B6 1581 aa12.02□□□□□ -0.49
Trim40-201ENSMUST00000087158 Phldb1Q6PDH0 1371 aaKnown RBP12□□□□□ -0.49
Trim40-201ENSMUST00000087158 Fam135aQ6NS59 1506 aa11.96□□□□□ -0.49
Trim40-201ENSMUST00000087158 Kif15Q6P9L6 1387 aa11.96□□□□□ -0.5
Trim40-201ENSMUST00000087158 Rapgef2Q8CHG7 1496 aa11.94□□□□□ -0.5
Trim40-201ENSMUST00000087158 Ehmt2Q9Z148 1263 aaKnown RBP11.88□□□□□ -0.51
Trim40-201ENSMUST00000087158 Camsap1A2AHC3 1581 aa11.88□□□□□ -0.51
Trim40-201ENSMUST00000087158 Ubl4bQ9CQ84 188 aa11.86□□□□□ -0.51
Trim40-201ENSMUST00000087158 Ccdc18Q640L5 1455 aa11.86□□□□□ -0.51
Trim40-201ENSMUST00000087158 Dmrt2Q8BG36 561 aa11.86□□□□□ -0.51
Trim40-201ENSMUST00000087158 Cep162Q6ZQ06 1403 aa11.84□□□□□ -0.51
Trim40-201ENSMUST00000087158 Cux2P70298 1426 aa11.82□□□□□ -0.52
Trim40-201ENSMUST00000087158 Baz1bQ9Z277 1479 aa11.81□□□□□ -0.52
Trim40-201ENSMUST00000087158 Il27Q8K3I6 234 aa11.8□□□□□ -0.52
Trim40-201ENSMUST00000087158 NrkQ9R0G8 1455 aa11.8□□□□□ -0.52
Trim40-201ENSMUST00000087158 Npm2Q80W85 207 aa11.8□□□□□ -0.52
Trim40-201ENSMUST00000087158 Eif4g1Q6NZJ6 1600 aaKnown RBP11.79□□□□□ -0.52
Trim40-201ENSMUST00000087158 Grin2bQ01097 1482 aa11.77□□□□□ -0.52
Trim40-201ENSMUST00000087158 Shroom4Q1W617 1475 aa11.76□□□□□ -0.53
Trim40-201ENSMUST00000087158 Slc4a1apE9PX68 744 aa11.76□□□□□ -0.53
Trim40-201ENSMUST00000087158 PtprkP35822 1457 aa11.76□□□□□ -0.53
Trim40-201ENSMUST00000087158 Npm1Q61937 292 aaKnown RBP11.75□□□□□ -0.53
Trim40-201ENSMUST00000087158 Mrc2Q64449 1479 aa11.71□□□□□ -0.53
Trim40-201ENSMUST00000087158 Arhgap35Q91YM2 1499 aa11.71□□□□□ -0.53
Trim40-201ENSMUST00000087158 Myt1lP97500 1187 aa11.71□□□□□ -0.54
Trim40-201ENSMUST00000087158 LrpprcQ6PB66 1392 aaKnown RBP11.7□□□□□ -0.54
Trim40-201ENSMUST00000087158 Map3k1P53349 1493 aa11.68□□□□□ -0.54
Trim40-201ENSMUST00000087158 Efcab5A0JP43 1406 aa11.68□□□□□ -0.54
Trim40-201ENSMUST00000087158 PogzQ8BZH4 1409 aaKnown RBP11.67□□□□□ -0.54
Trim40-201ENSMUST00000087158 Pcgf6Q99NA9 353 aa11.65□□□□□ -0.54
Trim40-201ENSMUST00000087158 Mroh2bQ7M6Y6 1581 aa11.64□□□□□ -0.55
Trim40-201ENSMUST00000087158 Duox2A2AQ99 1517 aa11.64□□□□□ -0.55
Trim40-201ENSMUST00000087158 Dhx29Q6PGC1 1365 aaKnown RBP11.61□□□□□ -0.55
Trim40-201ENSMUST00000087158 Clip1Q922J3 1391 aa11.6□□□□□ -0.55
Trim40-201ENSMUST00000087158 Zeb1Q64318 1117 aa11.59□□□□□ -0.55
Trim40-201ENSMUST00000087158 Kif21aQ9QXL2 1672 aa11.59□□□□□ -0.55
Trim40-201ENSMUST00000087158 AqrQ8CFQ3 1481 aaKnown RBP11.58□□□□□ -0.56
Trim40-201ENSMUST00000087158 Eea1Q8BL66 1411 aa11.57□□□□□ -0.56
Trim40-201ENSMUST00000087158 Crocc2F6XLV1 1638 aa11.56□□□□□ -0.56
Trim40-201ENSMUST00000087158 Dnajc5P60904 198 aa11.56□□□□□ -0.56
Trim40-201ENSMUST00000087158 Samd9lQ69Z37 1561 aa11.55□□□□□ -0.56
Trim40-201ENSMUST00000087158 Carmil1Q6EDY6 1374 aa11.53□□□□□ -0.56
Retrieved 100 of 22,080 RNA–protein pairs in 14 ms