RNA–Protein interactions for RNA: ENSMUST00000082209.12

Scn8a-201, Transcript of Sodium channel protein type 8 subunit alpha, mousemouse

APPRIS ALT1 TSL 5 BASIC

Gene Scn8a, Length 11,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn8a-201ENSMUST00000082209 Rhox8Q6VSS7 320 aa17.89■□□□□ 0.45
Scn8a-201ENSMUST00000082209 Rpgrip1Q9EPQ2 1331 aa17.43■□□□□ 0.38
Scn8a-201ENSMUST00000082209 Rtl1Q7M732 1744 aa16.87■□□□□ 0.29
Scn8a-201ENSMUST00000082209 Cngb1E1AZ71 1325 aa16.69■□□□□ 0.26
Scn8a-201ENSMUST00000082209 Las1lA2BE28 776 aaKnown RBP16.56■□□□□ 0.24
Scn8a-201ENSMUST00000082209 NischQ80TM9 1593 aa16.41■□□□□ 0.22
Scn8a-201ENSMUST00000082209 Ccdc180J3QNE4 1664 aa16.4■□□□□ 0.22
Scn8a-201ENSMUST00000082209 Pelp1Q9DBD5 1123 aaKnown RBP16.33■□□□□ 0.21
Scn8a-201ENSMUST00000082209 Trim41Q5NCC3 630 aa16.03■□□□□ 0.16
Scn8a-201ENSMUST00000082209 Esf1Q3V1V3 845 aaKnown RBP15.94■□□□□ 0.14
Scn8a-201ENSMUST00000082209 Stra8P70278 393 aa15.79■□□□□ 0.12
Scn8a-201ENSMUST00000082209 Ccdc136Q3TVA9 1136 aa15.79■□□□□ 0.12
Scn8a-201ENSMUST00000082209 Wdr66E9Q743 1299 aa15.79■□□□□ 0.12
Scn8a-201ENSMUST00000082209 NefmP08553 848 aa15.69■□□□□ 0.1
Scn8a-201ENSMUST00000082209 Ehmt2Q9Z148 1263 aaKnown RBP15.67■□□□□ 0.1
Scn8a-201ENSMUST00000082209 Ube2uB1AUC4 352 aa15.65■□□□□ 0.1
Scn8a-201ENSMUST00000082209 Npm2Q80W85 207 aa15.64■□□□□ 0.09
Scn8a-201ENSMUST00000082209 Acin1Q9JIX8 1338 aaKnown RBP15.59■□□□□ 0.09
Scn8a-201ENSMUST00000082209 Zeb1Q64318 1117 aa15.56■□□□□ 0.08
Scn8a-201ENSMUST00000082209 CenpbP27790 599 aa15.52■□□□□ 0.08
Scn8a-201ENSMUST00000082209 Myt1Q8CFC2 1127 aa15.46■□□□□ 0.06
Scn8a-201ENSMUST00000082209 HrcG5E8J6 738 aa15.44■□□□□ 0.06
Scn8a-201ENSMUST00000082209 Gab3Q8BSM5 595 aa15.36■□□□□ 0.05
Scn8a-201ENSMUST00000082209 Abcc9P70170 1546 aa15.31■□□□□ 0.04
Scn8a-201ENSMUST00000082209 Myt1lP97500 1187 aa15.28■□□□□ 0.04
Scn8a-201ENSMUST00000082209 Tnnt3Q9QZ47 272 aa15.22■□□□□ 0.03
Scn8a-201ENSMUST00000082209 Anp32bQ9EST5 272 aaKnown RBP15.13■□□□□ 0.01
Scn8a-201ENSMUST00000082209 Amer1Q7TS75 1132 aa15.07■□□□□ 0
Scn8a-201ENSMUST00000082209 Cdk11bP24788 784 aaKnown RBP15.06■□□□□ 0
Scn8a-201ENSMUST00000082209 UbtfP25976 765 aaKnown RBP15.06■□□□□ 0
Scn8a-201ENSMUST00000082209 Rtl5Q5DTT4 599 aa15.04■□□□□ -0
Scn8a-201ENSMUST00000082209 4930567H17RikQ3V0K5 233 aa14.99□□□□□ -0.01
Scn8a-201ENSMUST00000082209 NeflP08551 543 aa14.98□□□□□ -0.01
Scn8a-201ENSMUST00000082209 Gm35339A0A140LHH9 1649 aa14.95□□□□□ -0.02
Scn8a-201ENSMUST00000082209 Zcchc6Q5BLK4 1491 aaKnown RBP14.95□□□□□ -0.02
Scn8a-201ENSMUST00000082209 NrdcQ8BHG1 1161 aa14.92□□□□□ -0.02
Scn8a-201ENSMUST00000082209 Pcgf6Q99NA9 353 aa14.81□□□□□ -0.04
Scn8a-201ENSMUST00000082209 Nop58Q6DFW4 536 aaKnown RBP14.8□□□□□ -0.04
Scn8a-201ENSMUST00000082209 Neurod1Q60867 357 aa14.8□□□□□ -0.04
Scn8a-201ENSMUST00000082209 Abcc8B2RUS7 1588 aa14.78□□□□□ -0.04
Scn8a-201ENSMUST00000082209 NclP09405 707 aaKnown RBP14.77□□□□□ -0.04
Scn8a-201ENSMUST00000082209 TonslQ6NZL6 1363 aa14.77□□□□□ -0.05
Scn8a-201ENSMUST00000082209 Slc24a1Q91WD8 1130 aa14.73□□□□□ -0.05
Scn8a-201ENSMUST00000082209 Hdac5Q9Z2V6 1113 aa14.72□□□□□ -0.05
Scn8a-201ENSMUST00000082209 Fam50aQ9WV03 339 aaKnown RBP14.66□□□□□ -0.06
Scn8a-201ENSMUST00000082209 4933416C03RikQ3V063 378 aa14.65□□□□□ -0.06
Scn8a-201ENSMUST00000082209 Brd4Q9ESU6 1400 aaKnown RBP14.62□□□□□ -0.07
Scn8a-201ENSMUST00000082209 Rb1cc1Q9ESK9 1588 aa14.61□□□□□ -0.07
Scn8a-201ENSMUST00000082209 Dcaf1Q80TR8 1506 aa14.59□□□□□ -0.07
Scn8a-201ENSMUST00000082209 Il27Q8K3I6 234 aa14.59□□□□□ -0.07
Scn8a-201ENSMUST00000082209 ClspnQ80YR7 1315 aa14.55□□□□□ -0.08
Scn8a-201ENSMUST00000082209 Os9Q8K2C7 672 aa14.51□□□□□ -0.09
Scn8a-201ENSMUST00000082209 Cep164Q5DU05 1446 aa14.48□□□□□ -0.09
Scn8a-201ENSMUST00000082209 Anp32aO35381 247 aa14.44□□□□□ -0.1
Scn8a-201ENSMUST00000082209 Ccer2J3QPU5 274 aa14.43□□□□□ -0.1
Scn8a-201ENSMUST00000082209 Ttbk1Q6PCN3 1308 aa14.41□□□□□ -0.1
Scn8a-201ENSMUST00000082209 Mier1Q5UAK0 511 aa14.39□□□□□ -0.11
Scn8a-201ENSMUST00000082209 Eif5bQ05D44 1216 aaKnown RBP14.38□□□□□ -0.11
Scn8a-201ENSMUST00000082209 Npm1Q61937 292 aaKnown RBP14.37□□□□□ -0.11
Scn8a-201ENSMUST00000082209 Ap3b1Q9Z1T1 1105 aa14.37□□□□□ -0.11
Scn8a-201ENSMUST00000082209 Supt5hO55201 1082 aaKnown RBP14.35□□□□□ -0.11
Scn8a-201ENSMUST00000082209 Upf2A2AT37 1269 aaKnown RBP14.31□□□□□ -0.12
Scn8a-201ENSMUST00000082209 Baz1aO88379 1555 aa14.23□□□□□ -0.13
Scn8a-201ENSMUST00000082209 Ccdc9Q8VC31 543 aaKnown RBP14.22□□□□□ -0.13
Scn8a-201ENSMUST00000082209 NacadQ5SWP3 1504 aa14.18□□□□□ -0.14
Scn8a-201ENSMUST00000082209 Anks4bQ8K3X6 423 aa14.17□□□□□ -0.14
Scn8a-201ENSMUST00000082209 Clip1Q922J3 1391 aa14.16□□□□□ -0.14
Scn8a-201ENSMUST00000082209 Nlrp6Q91WS2 869 aa14.13□□□□□ -0.15
Scn8a-201ENSMUST00000082209 Aplp2Q06335 707 aa14.11□□□□□ -0.15
Scn8a-201ENSMUST00000082209 DaxxO35613 739 aa14.09□□□□□ -0.15
Scn8a-201ENSMUST00000082209 Plekhg3Q4VAC9 1341 aa14.09□□□□□ -0.15
Scn8a-201ENSMUST00000082209 Clstn2Q9ER65 966 aa14.06□□□□□ -0.16
Scn8a-201ENSMUST00000082209 DiexfQ8BTT6 772 aaKnown RBP14.05□□□□□ -0.16
Scn8a-201ENSMUST00000082209 Hnrnpul2Q00PI9 745 aaKnown RBP14.03□□□□□ -0.16
Scn8a-201ENSMUST00000082209 Gm13697A2AK42 830 aa14.01□□□□□ -0.17
Scn8a-201ENSMUST00000082209 Lmod2Q3UHZ5 550 aa13.98□□□□□ -0.17
Scn8a-201ENSMUST00000082209 Ccdc18Q640L5 1455 aa13.94□□□□□ -0.18
Scn8a-201ENSMUST00000082209 Calr4Q3TQS0 420 aa13.93□□□□□ -0.18
Scn8a-201ENSMUST00000082209 Golga3P55937 1487 aa13.9□□□□□ -0.18
Scn8a-201ENSMUST00000082209 Ppargc1bQ8VHJ7 1014 aa13.89□□□□□ -0.19
Scn8a-201ENSMUST00000082209 BlmO88700 1416 aa13.89□□□□□ -0.19
Scn8a-201ENSMUST00000082209 Atp1b4Q99ME6 356 aa13.87□□□□□ -0.19
Scn8a-201ENSMUST00000082209 Wdr43Q6ZQL4 677 aaKnown RBP13.86□□□□□ -0.19
Scn8a-201ENSMUST00000082209 Eea1Q8BL66 1411 aa13.86□□□□□ -0.19
Scn8a-201ENSMUST00000082209 Erich6D3Z6S9 713 aa13.85□□□□□ -0.19
Scn8a-201ENSMUST00000082209 Ercc6F8VPZ5 1481 aa13.85□□□□□ -0.19
Scn8a-201ENSMUST00000082209 Hsp90aa1P07901 733 aaKnown RBP13.84□□□□□ -0.19
Scn8a-201ENSMUST00000082209 Mia2Q91ZV0 1396 aa13.82□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Gm13695A2AK44 830 aa13.82□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Zbtb7cQ8VCZ7 619 aa13.81□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Rsf1E9PWW9 1441 aaKnown RBP13.81□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Zfp777B9EKF4 885 aa13.8□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Setd5Q5XJV7 1441 aa13.8□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Cwc22Q8C5N3 908 aaKnown RBP13.79□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Polr3glQ8R0C0 218 aa13.79□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Chmp4bQ9D8B3 224 aaKnown RBP13.78□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Ppp4r2Q0VGB7 417 aa13.77□□□□□ -0.2
Scn8a-201ENSMUST00000082209 Sall2Q9QX96 1004 aa13.77□□□□□ -0.21
Scn8a-201ENSMUST00000082209 Ubl4bQ9CQ84 188 aa13.75□□□□□ -0.21
Scn8a-201ENSMUST00000082209 Trim44Q9QXA7 346 aa13.75□□□□□ -0.21
Retrieved 100 of 22,080 RNA–protein pairs in 106 ms