RNA–Protein interactions for RNA: ENSMUST00000077689.13

Ssh1-201, Transcript of Protein phosphatase Slingshot homolog 1, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ssh1, Length 3,164 nt, Biotype protein coding, Subcellular localisation Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ssh1-201ENSMUST00000077689 NischQ80TM9 1593 aa20.56■□□□□ 0.88
Ssh1-201ENSMUST00000077689 Gm35339A0A140LHH9 1649 aa19.97■□□□□ 0.79
Ssh1-201ENSMUST00000077689 Abcc9P70170 1546 aa19.88■□□□□ 0.77
Ssh1-201ENSMUST00000077689 Rpgrip1Q9EPQ2 1331 aa19.81■□□□□ 0.76
Ssh1-201ENSMUST00000077689 Abcc8B2RUS7 1588 aa19.48■□□□□ 0.71
Ssh1-201ENSMUST00000077689 Rhox8Q6VSS7 320 aa19.41■□□□□ 0.7
Ssh1-201ENSMUST00000077689 Pcgf6Q99NA9 353 aa19.22■□□□□ 0.67
Ssh1-201ENSMUST00000077689 Acin1Q9JIX8 1338 aaKnown RBP18.98■□□□□ 0.63
Ssh1-201ENSMUST00000077689 Las1lA2BE28 776 aaKnown RBP18.6■□□□□ 0.57
Ssh1-201ENSMUST00000077689 Neurod1Q60867 357 aa18.6■□□□□ 0.57
Ssh1-201ENSMUST00000077689 Ehmt2Q9Z148 1263 aaKnown RBP18.58■□□□□ 0.56
Ssh1-201ENSMUST00000077689 Rtl1Q7M732 1744 aa18.56■□□□□ 0.56
Ssh1-201ENSMUST00000077689 DiexfQ8BTT6 772 aaKnown RBP18.56■□□□□ 0.56
Ssh1-201ENSMUST00000077689 CenpbP27790 599 aa18.48■□□□□ 0.55
Ssh1-201ENSMUST00000077689 Supt5hO55201 1082 aaKnown RBP18.43■□□□□ 0.54
Ssh1-201ENSMUST00000077689 Myt1Q8CFC2 1127 aa18.4■□□□□ 0.54
Ssh1-201ENSMUST00000077689 1700123L14RikQ3V2K7 440 aa18.34■□□□□ 0.53
Ssh1-201ENSMUST00000077689 Ccdc180J3QNE4 1664 aa18.3■□□□□ 0.52
Ssh1-201ENSMUST00000077689 Bcl11aQ9QYE3 773 aa18.15■□□□□ 0.5
Ssh1-201ENSMUST00000077689 Trim41Q5NCC3 630 aa18.14■□□□□ 0.49
Ssh1-201ENSMUST00000077689 ScribQ80U72 1612 aa18.13■□□□□ 0.49
Ssh1-201ENSMUST00000077689 Dcaf1Q80TR8 1506 aa18.07■□□□□ 0.48
Ssh1-201ENSMUST00000077689 Csrnp3P59055 597 aa18.06■□□□□ 0.48
Ssh1-201ENSMUST00000077689 Rb1cc1Q9ESK9 1588 aa18.01■□□□□ 0.47
Ssh1-201ENSMUST00000077689 Ccdc136Q3TVA9 1136 aa17.97■□□□□ 0.47
Ssh1-201ENSMUST00000077689 Zcchc6Q5BLK4 1491 aaKnown RBP17.96■□□□□ 0.47
Ssh1-201ENSMUST00000077689 Kdm5dQ62240 1548 aa17.87■□□□□ 0.45
Ssh1-201ENSMUST00000077689 PrkcshO08795 521 aa17.81■□□□□ 0.44
Ssh1-201ENSMUST00000077689 Anks4bQ8K3X6 423 aa17.81■□□□□ 0.44
Ssh1-201ENSMUST00000077689 Baz1aO88379 1555 aa17.77■□□□□ 0.43
Ssh1-201ENSMUST00000077689 NacadQ5SWP3 1504 aa17.74■□□□□ 0.43
Ssh1-201ENSMUST00000077689 Aplp2Q06335 707 aa17.72■□□□□ 0.43
Ssh1-201ENSMUST00000077689 Zeb1Q64318 1117 aa17.69■□□□□ 0.42
Ssh1-201ENSMUST00000077689 Amer1Q7TS75 1132 aa17.67■□□□□ 0.42
Ssh1-201ENSMUST00000077689 Gm38655A0A286YDK6 273 aa17.64■□□□□ 0.41
Ssh1-201ENSMUST00000077689 Cngb1E1AZ71 1325 aa17.61■□□□□ 0.41
Ssh1-201ENSMUST00000077689 HrcG5E8J6 738 aa17.59■□□□□ 0.41
Ssh1-201ENSMUST00000077689 Sall2Q9QX96 1004 aa17.5■□□□□ 0.39
Ssh1-201ENSMUST00000077689 Ifnlr1Q8CGK5 535 aa17.45■□□□□ 0.38
Ssh1-201ENSMUST00000077689 Crybg2B7ZCC2 1516 aa17.36■□□□□ 0.37
Ssh1-201ENSMUST00000077689 Sycp2Q9CUU3 1500 aa17.33■□□□□ 0.37
Ssh1-201ENSMUST00000077689 Smarca2Q6DIC0 1577 aa17.32■□□□□ 0.36
Ssh1-201ENSMUST00000077689 Fam71e1A1L3C1 212 aa17.3■□□□□ 0.36
Ssh1-201ENSMUST00000077689 Cdk11bP24788 784 aaKnown RBP17.25■□□□□ 0.35
Ssh1-201ENSMUST00000077689 Nop58Q6DFW4 536 aaKnown RBP17.15■□□□□ 0.34
Ssh1-201ENSMUST00000077689 Mapk8ip2Q9ERE9 830 aa17.08■□□□□ 0.32
Ssh1-201ENSMUST00000077689 NefmP08553 848 aa17.07■□□□□ 0.32
Ssh1-201ENSMUST00000077689 Brd4Q9ESU6 1400 aaKnown RBP17.06■□□□□ 0.32
Ssh1-201ENSMUST00000077689 Wdr66E9Q743 1299 aa17.06■□□□□ 0.32
Ssh1-201ENSMUST00000077689 Cep164Q5DU05 1446 aa17.05■□□□□ 0.32
Ssh1-201ENSMUST00000077689 Cecr2E9Q2Z1 1453 aa17.03■□□□□ 0.32
Ssh1-201ENSMUST00000077689 Esf1Q3V1V3 845 aaKnown RBP17■□□□□ 0.31
Ssh1-201ENSMUST00000077689 Gab3Q8BSM5 595 aa17■□□□□ 0.31
Ssh1-201ENSMUST00000077689 Chic1Q8CBW7 227 aa16.97■□□□□ 0.31
Ssh1-201ENSMUST00000077689 Ppargc1bQ8VHJ7 1014 aa16.92■□□□□ 0.3
Ssh1-201ENSMUST00000077689 SafbD3YXK2 937 aaKnown RBP16.91■□□□□ 0.3
Ssh1-201ENSMUST00000077689 BicraF8VPZ9 1578 aa16.91■□□□□ 0.3
Ssh1-201ENSMUST00000077689 Rsf1E9PWW9 1441 aaKnown RBP16.89■□□□□ 0.3
Ssh1-201ENSMUST00000077689 Hdac5Q9Z2V6 1113 aa16.89■□□□□ 0.29
Ssh1-201ENSMUST00000077689 Golga3P55937 1487 aa16.85■□□□□ 0.29
Ssh1-201ENSMUST00000077689 Synj1Q8CHC4 1574 aa16.85■□□□□ 0.29
Ssh1-201ENSMUST00000077689 Aebp2Q9Z248 504 aaKnown RBP16.84■□□□□ 0.29
Ssh1-201ENSMUST00000077689 Mier1Q5UAK0 511 aa16.82■□□□□ 0.28
Ssh1-201ENSMUST00000077689 Ccdc88bQ4QRL3 1481 aa16.79■□□□□ 0.28
Ssh1-201ENSMUST00000077689 Pknox2Q8BG99 474 aa16.79■□□□□ 0.28
Ssh1-201ENSMUST00000077689 CftrP26361 1476 aa16.77■□□□□ 0.28
Ssh1-201ENSMUST00000077689 Ttbk1Q6PCN3 1308 aa16.74■□□□□ 0.27
Ssh1-201ENSMUST00000077689 Hnrnpul2Q00PI9 745 aaKnown RBP16.74■□□□□ 0.27
Ssh1-201ENSMUST00000077689 ClspnQ80YR7 1315 aa16.73■□□□□ 0.27
Ssh1-201ENSMUST00000077689 Fgd1P52734 960 aa16.71■□□□□ 0.27
Ssh1-201ENSMUST00000077689 Rtl5Q5DTT4 599 aa16.66■□□□□ 0.26
Ssh1-201ENSMUST00000077689 Anp32aO35381 247 aa16.63■□□□□ 0.25
Ssh1-201ENSMUST00000077689 Cttnbp2B9EJA2 1648 aa16.6■□□□□ 0.25
Ssh1-201ENSMUST00000077689 NrdcQ8BHG1 1161 aa16.6■□□□□ 0.25
Ssh1-201ENSMUST00000077689 Smarca4Q3TKT4 1613 aaKnown RBP16.59■□□□□ 0.25
Ssh1-201ENSMUST00000077689 Pelp1Q9DBD5 1123 aaKnown RBP16.59■□□□□ 0.25
Ssh1-201ENSMUST00000077689 Tnnt3Q9QZ47 272 aa16.58■□□□□ 0.24
Ssh1-201ENSMUST00000077689 Plcd4Q8K3R3 807 aa16.53■□□□□ 0.24
Ssh1-201ENSMUST00000077689 Gtf3c3Q3TMP1 882 aa16.5■□□□□ 0.23
Ssh1-201ENSMUST00000077689 Top2bQ64511 1612 aa16.5■□□□□ 0.23
Ssh1-201ENSMUST00000077689 Il27Q8K3I6 234 aa16.49■□□□□ 0.23
Ssh1-201ENSMUST00000077689 Myt1lP97500 1187 aa16.43■□□□□ 0.22
Ssh1-201ENSMUST00000077689 Ap3b1Q9Z1T1 1105 aa16.42■□□□□ 0.22
Ssh1-201ENSMUST00000077689 Cc2d2aQ8CFW7 1633 aa16.42■□□□□ 0.22
Ssh1-201ENSMUST00000077689 Nolc1E9Q5C9 702 aaKnown RBP16.4■□□□□ 0.22
Ssh1-201ENSMUST00000077689 Npm2Q80W85 207 aa16.39■□□□□ 0.21
Ssh1-201ENSMUST00000077689 Iqgap2Q3UQ44 1575 aa16.39■□□□□ 0.21
Ssh1-201ENSMUST00000077689 Fmn1Q05860 1466 aa16.38■□□□□ 0.21
Ssh1-201ENSMUST00000077689 Upf2A2AT37 1269 aaKnown RBP16.35■□□□□ 0.21
Ssh1-201ENSMUST00000077689 Atad2bE9Q166 1460 aaKnown RBP16.34■□□□□ 0.21
Ssh1-201ENSMUST00000077689 UbtfP25976 765 aaKnown RBP16.31■□□□□ 0.2
Ssh1-201ENSMUST00000077689 Irx3P81067 507 aa16.3■□□□□ 0.2
Ssh1-201ENSMUST00000077689 Supt16hQ920B9 1047 aa16.29■□□□□ 0.2
Ssh1-201ENSMUST00000077689 Pds5bQ4VA53 1446 aaKnown RBP16.29■□□□□ 0.2
Ssh1-201ENSMUST00000077689 Rapgef2Q8CHG7 1496 aa16.27■□□□□ 0.19
Ssh1-201ENSMUST00000077689 Top2aQ01320 1528 aaKnown RBP16.24■□□□□ 0.19
Ssh1-201ENSMUST00000077689 Cep162Q6ZQ06 1403 aa16.21■□□□□ 0.19
Ssh1-201ENSMUST00000077689 TonslQ6NZL6 1363 aa16.17■□□□□ 0.18
Ssh1-201ENSMUST00000077689 Ccdc27Q3V036 639 aa16.16■□□□□ 0.18
Ssh1-201ENSMUST00000077689 Ipo4Q8VI75 1082 aa16.15■□□□□ 0.18
Retrieved 100 of 22,080 RNA–protein pairs in 98.3 ms