RNA–Protein interactions for RNA: ENSMUST00000062439.4

Ccdc54-201, Transcript of Coiled-coil domain-containing protein 54, mousemouse

APPRIS P1 BASIC

Gene Ccdc54, Length 1,296 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc54-201ENSMUST00000062439 Chic1Q8CBW7 227 aa29.71■■■□□ 2.35
Ccdc54-201ENSMUST00000062439 Mapk8ip2Q9ERE9 830 aa28.25■■■□□ 2.11
Ccdc54-201ENSMUST00000062439 Phf23Q8BSN5 401 aa26.83■■□□□ 1.89
Ccdc54-201ENSMUST00000062439 Plppr3Q7TPB0 716 aa26.41■■□□□ 1.82
Ccdc54-201ENSMUST00000062439 Gab3Q8BSM5 595 aa25.89■■□□□ 1.74
Ccdc54-201ENSMUST00000062439 Senp3Q9EP97 568 aaKnown RBP24.86■■□□□ 1.57
Ccdc54-201ENSMUST00000062439 Kcna4Q61423 654 aa24.61■■□□□ 1.53
Ccdc54-201ENSMUST00000062439 Ppargc1bQ8VHJ7 1014 aa22.2■■□□□ 1.14
Ccdc54-201ENSMUST00000062439 Dmrt2Q8BG36 561 aa22.03■■□□□ 1.12
Ccdc54-201ENSMUST00000062439 Trap1aP19473 224 aa21.95■■□□□ 1.1
Ccdc54-201ENSMUST00000062439 Hoxd11P23813 323 aa21.66■■□□□ 1.06
Ccdc54-201ENSMUST00000062439 Slc4a1apE9PX68 744 aa21.44■■□□□ 1.02
Ccdc54-201ENSMUST00000062439 Ube2uB1AUC4 352 aa20.99■□□□□ 0.95
Ccdc54-201ENSMUST00000062439 Atf5O70191 283 aa20.69■□□□□ 0.9
Ccdc54-201ENSMUST00000062439 Fam163aQ8CAA5 168 aa20.68■□□□□ 0.9
Ccdc54-201ENSMUST00000062439 Chrna2Q91X60 512 aa20.68■□□□□ 0.9
Ccdc54-201ENSMUST00000062439 Znf219Q6IQX8 726 aa20.67■□□□□ 0.9
Ccdc54-201ENSMUST00000062439 Dnajc5bQ9CQ94 199 aa20.55■□□□□ 0.88
Ccdc54-201ENSMUST00000062439 Ppp4r2Q0VGB7 417 aa20.49■□□□□ 0.87
Ccdc54-201ENSMUST00000062439 Rsph4aQ8BYM7 716 aa20.46■□□□□ 0.87
Ccdc54-201ENSMUST00000062439 Hs6st3Q9QYK4 470 aa20.42■□□□□ 0.86
Ccdc54-201ENSMUST00000062439 Fam71e1A1L3C1 212 aa20.25■□□□□ 0.83
Ccdc54-201ENSMUST00000062439 1700123L14RikQ3V2K7 440 aa20.25■□□□□ 0.83
Ccdc54-201ENSMUST00000062439 Rimbp2Q80U40 1072 aa20.17■□□□□ 0.82
Ccdc54-201ENSMUST00000062439 Nlrp6Q91WS2 869 aa19.74■□□□□ 0.75
Ccdc54-201ENSMUST00000062439 Cdca7Q9D0M2 382 aa19.62■□□□□ 0.73
Ccdc54-201ENSMUST00000062439 AcrbpQ3V140 540 aa19.57■□□□□ 0.72
Ccdc54-201ENSMUST00000062439 Akt1s1Q9D1F4 257 aa19.52■□□□□ 0.72
Ccdc54-201ENSMUST00000062439 Pde4cQ3UEI1 686 aa19.5■□□□□ 0.71
Ccdc54-201ENSMUST00000062439 Bach1P97302 739 aa19.47■□□□□ 0.71
Ccdc54-201ENSMUST00000062439 Slc34a2Q9DBP0 697 aa19.34■□□□□ 0.69
Ccdc54-201ENSMUST00000062439 ArsiQ32KI9 573 aa19.29■□□□□ 0.68
Ccdc54-201ENSMUST00000062439 Ehmt2Q9Z148 1263 aaKnown RBP19.22■□□□□ 0.67
Ccdc54-201ENSMUST00000062439 Rtn4Q99P72 1162 aaKnown RBP19.17■□□□□ 0.66
Ccdc54-201ENSMUST00000062439 C1qtnf12Q8R2Z0 308 aa19.13■□□□□ 0.65
Ccdc54-201ENSMUST00000062439 Sox12Q04890 314 aa19.12■□□□□ 0.65
Ccdc54-201ENSMUST00000062439 Prm3Q62100 101 aa19.09■□□□□ 0.65
Ccdc54-201ENSMUST00000062439 WdpcpQ8C456 722 aa19.09■□□□□ 0.65
Ccdc54-201ENSMUST00000062439 Tshz2Q68FE9 1030 aa18.99■□□□□ 0.63
Ccdc54-201ENSMUST00000062439 Npm2Q80W85 207 aa18.96■□□□□ 0.63
Ccdc54-201ENSMUST00000062439 Riok3Q9DBU3 519 aaKnown RBP18.94■□□□□ 0.62
Ccdc54-201ENSMUST00000062439 MyclP10166 368 aa18.86■□□□□ 0.61
Ccdc54-201ENSMUST00000062439 Styxl1Q9DAR2 321 aa18.69■□□□□ 0.58
Ccdc54-201ENSMUST00000062439 Trim41Q5NCC3 630 aa18.55■□□□□ 0.56
Ccdc54-201ENSMUST00000062439 Ms4a5Q810P8 197 aa18.53■□□□□ 0.56
Ccdc54-201ENSMUST00000062439 Ecm2Q5FW85 670 aa18.37■□□□□ 0.53
Ccdc54-201ENSMUST00000062439 G430095P16RikE9Q913 147 aa18.33■□□□□ 0.52
Ccdc54-201ENSMUST00000062439 Ifnlr1Q8CGK5 535 aa18.28■□□□□ 0.52
Ccdc54-201ENSMUST00000062439 Prdm10Q3UTQ7 1184 aa18.2■□□□□ 0.5
Ccdc54-201ENSMUST00000062439 Zbtb7aO88939 569 aaKnown RBP18.03■□□□□ 0.48
Ccdc54-201ENSMUST00000062439 Egfem1Q8C088 590 aa18.01■□□□□ 0.47
Ccdc54-201ENSMUST00000062439 Zbtb12Q9Z150 459 aa17.94■□□□□ 0.46
Ccdc54-201ENSMUST00000062439 Tcf3P15806 651 aa17.93■□□□□ 0.46
Ccdc54-201ENSMUST00000062439 Grwd1Q810D6 446 aaKnown RBP17.86■□□□□ 0.45
Ccdc54-201ENSMUST00000062439 MpndQ3TV65 487 aa17.8■□□□□ 0.44
Ccdc54-201ENSMUST00000062439 Fbln2P37889 1221 aa17.76■□□□□ 0.43
Ccdc54-201ENSMUST00000062439 Gtpbp6Q3U6U5 514 aa17.74■□□□□ 0.43
Ccdc54-201ENSMUST00000062439 Rnf216P58283 853 aa17.71■□□□□ 0.43
Ccdc54-201ENSMUST00000062439 Npm3Q9CPP0 175 aaKnown RBP17.7■□□□□ 0.42
Ccdc54-201ENSMUST00000062439 Abcb7Q61102 752 aaKnown RBP17.68■□□□□ 0.42
Ccdc54-201ENSMUST00000062439 Ppp1r37Q8BKR5 712 aa17.57■□□□□ 0.4
Ccdc54-201ENSMUST00000062439 CatipB9EKE5 520 aa17.48■□□□□ 0.39
Ccdc54-201ENSMUST00000062439 Nkx1-1G3UXB3 402 aa17.45■□□□□ 0.38
Ccdc54-201ENSMUST00000062439 Skida1Q80YR3 822 aa17.44■□□□□ 0.38
Ccdc54-201ENSMUST00000062439 Znf704Q9ERQ3 566 aa17.33■□□□□ 0.36
Ccdc54-201ENSMUST00000062439 Slc4a5E9Q3M5 1116 aa17.24■□□□□ 0.35
Ccdc54-201ENSMUST00000062439 Lrrc43Q3V0L5 667 aa17.12■□□□□ 0.33
Ccdc54-201ENSMUST00000062439 Ppp6r1Q7TSI3 856 aa17.12■□□□□ 0.33
Ccdc54-201ENSMUST00000062439 Prdm16A2A935 1275 aa17.04■□□□□ 0.32
Ccdc54-201ENSMUST00000062439 Spock2Q9ER58 423 aa17.04■□□□□ 0.32
Ccdc54-201ENSMUST00000062439 Jarid2Q62315 1234 aa17.02■□□□□ 0.32
Ccdc54-201ENSMUST00000062439 Taok2Q6ZQ29 1240 aa16.96■□□□□ 0.31
Ccdc54-201ENSMUST00000062439 MycnP03966 462 aaKnown RBP16.95■□□□□ 0.3
Ccdc54-201ENSMUST00000062439 Arid3aQ62431 601 aa16.86■□□□□ 0.29
Ccdc54-201ENSMUST00000062439 Zbtb22Q9Z0G7 638 aa16.81■□□□□ 0.28
Ccdc54-201ENSMUST00000062439 Skap1Q3UUV5 355 aa16.79■□□□□ 0.28
Ccdc54-201ENSMUST00000062439 Ferd3lQ923Z4 168 aa16.71■□□□□ 0.27
Ccdc54-201ENSMUST00000062439 Hdac5Q9Z2V6 1113 aa16.71■□□□□ 0.27
Ccdc54-201ENSMUST00000062439 Fam117bQ3U3E2 584 aa16.66■□□□□ 0.26
Ccdc54-201ENSMUST00000062439 Slc4a2P13808 1237 aaKnown RBP16.65■□□□□ 0.26
Ccdc54-201ENSMUST00000062439 Sra1Q80VJ2 232 aa16.64■□□□□ 0.25
Ccdc54-201ENSMUST00000062439 Repin1Q5U4E2 545 aa16.63■□□□□ 0.25
Ccdc54-201ENSMUST00000062439 Hnrnpul2Q00PI9 745 aaKnown RBP16.62■□□□□ 0.25
Ccdc54-201ENSMUST00000062439 Pde4dQ01063 747 aa16.62■□□□□ 0.25
Ccdc54-201ENSMUST00000062439 TimelessQ9R1X4 1197 aa16.62■□□□□ 0.25
Ccdc54-201ENSMUST00000062439 Pitpnm1O35954 1243 aa16.61■□□□□ 0.25
Ccdc54-201ENSMUST00000062439 Slc24a1Q91WD8 1130 aa16.59■□□□□ 0.25
Ccdc54-201ENSMUST00000062439 Cadps2Q8BYR5 1297 aa16.58■□□□□ 0.24
Ccdc54-201ENSMUST00000062439 Trim35Q8C006 501 aa16.49■□□□□ 0.23
Ccdc54-201ENSMUST00000062439 Nyap1Q6PFX7 833 aa16.47■□□□□ 0.23
Ccdc54-201ENSMUST00000062439 Gm13697A2AK42 830 aa16.42■□□□□ 0.22
Ccdc54-201ENSMUST00000062439 Rgl2Q61193 778 aa16.37■□□□□ 0.21
Ccdc54-201ENSMUST00000062439 Zeb1Q64318 1117 aa16.37■□□□□ 0.21
Ccdc54-201ENSMUST00000062439 Zbtb7bQ64321 544 aa16.36■□□□□ 0.21
Ccdc54-201ENSMUST00000062439 Rsph6aQ8CDR2 708 aa16.34■□□□□ 0.21
Ccdc54-201ENSMUST00000062439 Mkrn3Q60764 544 aa16.33■□□□□ 0.2
Ccdc54-201ENSMUST00000062439 Noa1Q9JJG9 693 aaKnown RBP16.32■□□□□ 0.2
Ccdc54-201ENSMUST00000062439 Chrm1P12657 460 aa16.26■□□□□ 0.19
Ccdc54-201ENSMUST00000062439 Atad2Q8CDM1 1040 aa16.26■□□□□ 0.19
Ccdc54-201ENSMUST00000062439 Kcnn1Q9EQR3 537 aa16.26■□□□□ 0.19
Retrieved 100 of 22,080 RNA–protein pairs in 40 ms