RNA–Protein interactions for RNA: ENSMUST00000057185.12

Pcdh1-201, Transcript of Protocadherin 1 (Fragment), mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcdh1, Length 3,902 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1-201ENSMUST00000057185 NischQ80TM9 1593 aa17.55■□□□□ 0.4
Pcdh1-201ENSMUST00000057185 Rhox8Q6VSS7 320 aa17.45■□□□□ 0.38
Pcdh1-201ENSMUST00000057185 Abcc9P70170 1546 aa16.81■□□□□ 0.28
Pcdh1-201ENSMUST00000057185 Gm35339A0A140LHH9 1649 aa16.56■□□□□ 0.24
Pcdh1-201ENSMUST00000057185 Abcc8B2RUS7 1588 aa16.47■□□□□ 0.23
Pcdh1-201ENSMUST00000057185 Ehmt2Q9Z148 1263 aaKnown RBP16.28■□□□□ 0.2
Pcdh1-201ENSMUST00000057185 Ccdc136Q3TVA9 1136 aa16.03■□□□□ 0.16
Pcdh1-201ENSMUST00000057185 Rpgrip1Q9EPQ2 1331 aa15.98■□□□□ 0.15
Pcdh1-201ENSMUST00000057185 Rtl1Q7M732 1744 aa15.88■□□□□ 0.13
Pcdh1-201ENSMUST00000057185 Ccdc180J3QNE4 1664 aa15.83■□□□□ 0.12
Pcdh1-201ENSMUST00000057185 Acin1Q9JIX8 1338 aaKnown RBP15.62■□□□□ 0.09
Pcdh1-201ENSMUST00000057185 Trim41Q5NCC3 630 aa15.56■□□□□ 0.08
Pcdh1-201ENSMUST00000057185 Gab3Q8BSM5 595 aa15.42■□□□□ 0.06
Pcdh1-201ENSMUST00000057185 Rb1cc1Q9ESK9 1588 aa15.39■□□□□ 0.05
Pcdh1-201ENSMUST00000057185 Cngb1E1AZ71 1325 aa15.39■□□□□ 0.05
Pcdh1-201ENSMUST00000057185 Zcchc6Q5BLK4 1491 aaKnown RBP15.38■□□□□ 0.05
Pcdh1-201ENSMUST00000057185 HrcG5E8J6 738 aa15.37■□□□□ 0.05
Pcdh1-201ENSMUST00000057185 Zeb1Q64318 1117 aa15.27■□□□□ 0.04
Pcdh1-201ENSMUST00000057185 Pcgf6Q99NA9 353 aa15.27■□□□□ 0.03
Pcdh1-201ENSMUST00000057185 Dcaf1Q80TR8 1506 aa15.21■□□□□ 0.03
Pcdh1-201ENSMUST00000057185 ScribQ80U72 1612 aa15.21■□□□□ 0.03
Pcdh1-201ENSMUST00000057185 Esf1Q3V1V3 845 aaKnown RBP15.19■□□□□ 0.02
Pcdh1-201ENSMUST00000057185 Kdm5dQ62240 1548 aa15.15■□□□□ 0.02
Pcdh1-201ENSMUST00000057185 Baz1aO88379 1555 aa15.11■□□□□ 0.01
Pcdh1-201ENSMUST00000057185 NacadQ5SWP3 1504 aa15.06■□□□□ 0
Pcdh1-201ENSMUST00000057185 Supt5hO55201 1082 aaKnown RBP15.05■□□□□ -0
Pcdh1-201ENSMUST00000057185 Wdr66E9Q743 1299 aa14.96□□□□□ -0.01
Pcdh1-201ENSMUST00000057185 Chic1Q8CBW7 227 aa14.89□□□□□ -0.03
Pcdh1-201ENSMUST00000057185 Myt1lP97500 1187 aa14.87□□□□□ -0.03
Pcdh1-201ENSMUST00000057185 UbtfP25976 765 aaKnown RBP14.86□□□□□ -0.03
Pcdh1-201ENSMUST00000057185 Cep164Q5DU05 1446 aa14.79□□□□□ -0.04
Pcdh1-201ENSMUST00000057185 Las1lA2BE28 776 aaKnown RBP14.78□□□□□ -0.04
Pcdh1-201ENSMUST00000057185 NefmP08553 848 aa14.78□□□□□ -0.04
Pcdh1-201ENSMUST00000057185 Ppargc1bQ8VHJ7 1014 aa14.75□□□□□ -0.05
Pcdh1-201ENSMUST00000057185 Mier1Q5UAK0 511 aa14.74□□□□□ -0.05
Pcdh1-201ENSMUST00000057185 Brd4Q9ESU6 1400 aaKnown RBP14.72□□□□□ -0.05
Pcdh1-201ENSMUST00000057185 Npm2Q80W85 207 aa14.71□□□□□ -0.05
Pcdh1-201ENSMUST00000057185 Smarca2Q6DIC0 1577 aa14.66□□□□□ -0.06
Pcdh1-201ENSMUST00000057185 Sycp2Q9CUU3 1500 aa14.65□□□□□ -0.06
Pcdh1-201ENSMUST00000057185 Neurod1Q60867 357 aa14.65□□□□□ -0.06
Pcdh1-201ENSMUST00000057185 Rsf1E9PWW9 1441 aaKnown RBP14.64□□□□□ -0.07
Pcdh1-201ENSMUST00000057185 Crybg2B7ZCC2 1516 aa14.58□□□□□ -0.08
Pcdh1-201ENSMUST00000057185 Cecr2E9Q2Z1 1453 aa14.58□□□□□ -0.08
Pcdh1-201ENSMUST00000057185 Sall2Q9QX96 1004 aa14.56□□□□□ -0.08
Pcdh1-201ENSMUST00000057185 Ccdc88bQ4QRL3 1481 aa14.53□□□□□ -0.08
Pcdh1-201ENSMUST00000057185 Golga3P55937 1487 aa14.53□□□□□ -0.08
Pcdh1-201ENSMUST00000057185 Il27Q8K3I6 234 aa14.51□□□□□ -0.09
Pcdh1-201ENSMUST00000057185 Cdk11bP24788 784 aaKnown RBP14.41□□□□□ -0.1
Pcdh1-201ENSMUST00000057185 Nop58Q6DFW4 536 aaKnown RBP14.39□□□□□ -0.11
Pcdh1-201ENSMUST00000057185 Synj1Q8CHC4 1574 aa14.39□□□□□ -0.11
Pcdh1-201ENSMUST00000057185 Ap3b1Q9Z1T1 1105 aa14.38□□□□□ -0.11
Pcdh1-201ENSMUST00000057185 Plekhg3Q4VAC9 1341 aa14.37□□□□□ -0.11
Pcdh1-201ENSMUST00000057185 CftrP26361 1476 aa14.33□□□□□ -0.12
Pcdh1-201ENSMUST00000057185 Csrnp3P59055 597 aa14.29□□□□□ -0.12
Pcdh1-201ENSMUST00000057185 Aebp2Q9Z248 504 aaKnown RBP14.29□□□□□ -0.12
Pcdh1-201ENSMUST00000057185 TonslQ6NZL6 1363 aa14.29□□□□□ -0.12
Pcdh1-201ENSMUST00000057185 BicraF8VPZ9 1578 aa14.28□□□□□ -0.12
Pcdh1-201ENSMUST00000057185 Ube2uB1AUC4 352 aa14.26□□□□□ -0.13
Pcdh1-201ENSMUST00000057185 Gm38655A0A286YDK6 273 aa14.25□□□□□ -0.13
Pcdh1-201ENSMUST00000057185 Pds5bQ4VA53 1446 aaKnown RBP14.22□□□□□ -0.13
Pcdh1-201ENSMUST00000057185 Eid3Q3V124 375 aa14.22□□□□□ -0.13
Pcdh1-201ENSMUST00000057185 Dnajc5bQ9CQ94 199 aa14.21□□□□□ -0.13
Pcdh1-201ENSMUST00000057185 CenpbP27790 599 aa14.21□□□□□ -0.14
Pcdh1-201ENSMUST00000057185 ClspnQ80YR7 1315 aa14.2□□□□□ -0.14
Pcdh1-201ENSMUST00000057185 Anks4bQ8K3X6 423 aa14.17□□□□□ -0.14
Pcdh1-201ENSMUST00000057185 Mapk8ip2Q9ERE9 830 aa14.16□□□□□ -0.14
Pcdh1-201ENSMUST00000057185 Clip1Q922J3 1391 aa14.16□□□□□ -0.14
Pcdh1-201ENSMUST00000057185 Fam50aQ9WV03 339 aaKnown RBP14.15□□□□□ -0.14
Pcdh1-201ENSMUST00000057185 Ubl4bQ9CQ84 188 aa14.13□□□□□ -0.15
Pcdh1-201ENSMUST00000057185 Slc24a1Q91WD8 1130 aa14.12□□□□□ -0.15
Pcdh1-201ENSMUST00000057185 Cttnbp2B9EJA2 1648 aa14.1□□□□□ -0.15
Pcdh1-201ENSMUST00000057185 1700123L14RikQ3V2K7 440 aa14.1□□□□□ -0.15
Pcdh1-201ENSMUST00000057185 Smarca4Q3TKT4 1613 aaKnown RBP14.09□□□□□ -0.15
Pcdh1-201ENSMUST00000057185 Ercc6F8VPZ5 1481 aa14.07□□□□□ -0.16
Pcdh1-201ENSMUST00000057185 Fmn1Q05860 1466 aa14.07□□□□□ -0.16
Pcdh1-201ENSMUST00000057185 NclP09405 707 aaKnown RBP14.05□□□□□ -0.16
Pcdh1-201ENSMUST00000057185 Cep162Q6ZQ06 1403 aa14.04□□□□□ -0.16
Pcdh1-201ENSMUST00000057185 Cc2d2aQ8CFW7 1633 aa14.04□□□□□ -0.16
Pcdh1-201ENSMUST00000057185 Atad2bE9Q166 1460 aaKnown RBP14.04□□□□□ -0.16
Pcdh1-201ENSMUST00000057185 Lmod2Q3UHZ5 550 aa14.04□□□□□ -0.16
Pcdh1-201ENSMUST00000057185 Rapgef2Q8CHG7 1496 aa14.01□□□□□ -0.17
Pcdh1-201ENSMUST00000057185 Kif15Q6P9L6 1387 aa13.99□□□□□ -0.17
Pcdh1-201ENSMUST00000057185 Npm1Q61937 292 aaKnown RBP13.98□□□□□ -0.17
Pcdh1-201ENSMUST00000057185 Top2bQ64511 1612 aa13.95□□□□□ -0.18
Pcdh1-201ENSMUST00000057185 Iqgap2Q3UQ44 1575 aa13.94□□□□□ -0.18
Pcdh1-201ENSMUST00000057185 Setd5Q5XJV7 1441 aa13.9□□□□□ -0.18
Pcdh1-201ENSMUST00000057185 Aplp2Q06335 707 aa13.86□□□□□ -0.19
Pcdh1-201ENSMUST00000057185 Top2aQ01320 1528 aaKnown RBP13.85□□□□□ -0.19
Pcdh1-201ENSMUST00000057185 Stra8P70278 393 aa13.84□□□□□ -0.19
Pcdh1-201ENSMUST00000057185 Eea1Q8BL66 1411 aa13.83□□□□□ -0.2
Pcdh1-201ENSMUST00000057185 Tnnt3Q9QZ47 272 aa13.83□□□□□ -0.2
Pcdh1-201ENSMUST00000057185 BlmO88700 1416 aa13.82□□□□□ -0.2
Pcdh1-201ENSMUST00000057185 Eif5bQ05D44 1216 aaKnown RBP13.81□□□□□ -0.2
Pcdh1-201ENSMUST00000057185 Phldb1Q6PDH0 1371 aaKnown RBP13.79□□□□□ -0.2
Pcdh1-201ENSMUST00000057185 SafbD3YXK2 937 aaKnown RBP13.75□□□□□ -0.21
Pcdh1-201ENSMUST00000057185 Ccdc18Q640L5 1455 aa13.74□□□□□ -0.21
Pcdh1-201ENSMUST00000057185 Hnrnpul2Q00PI9 745 aaKnown RBP13.73□□□□□ -0.21
Pcdh1-201ENSMUST00000057185 PtprkP35822 1457 aa13.71□□□□□ -0.21
Pcdh1-201ENSMUST00000057185 Frmpd1A2AKB4 1549 aa13.7□□□□□ -0.22
Pcdh1-201ENSMUST00000057185 Chic2Q9D9G3 165 aa13.67□□□□□ -0.22
Retrieved 100 of 22,080 RNA–protein pairs in 48.7 ms