RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 MRNIPQ6NTE8 343 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 TTC23LQ6PF05 361 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 SDCCAG8Q86SQ7 713 aaPredicted RBP18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 DCUN1D3Q8IWE4 304 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 ENDOVQ8N8Q3 282 aaKnown RBP18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 FLVCR1-AS1Q8TAF5 88 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 RUFY1Q96T51 708 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 TCF12Q99081 682 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 KLHL25Q9H0H3 589 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 SPHK1Q9NYA1 384 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 TCFL5Q9UL49 500 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 PADI2Q9Y2J8 665 aa18.41■□□□□ 0.54
CCDC28A-203ENST00000617445 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 ISM1B1AKI9 464 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 OR2B3O76000 313 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 FKBP9O95302 570 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 PKLRP30613 574 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 KCNJ1P48048 391 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 CSE1LP55060 971 aaKnown RBP18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 CCZ1BP86790 482 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 CCZ1P86791 482 aaPredicted RBP18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 IL10RAQ13651 578 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 RNF187Q5TA31 235 aaPredicted RBP18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 TLDC1Q6P9B6 456 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 ASB18Q6ZVZ8 466 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 TEX19Q8NA77 164 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 PROKR1Q8TCW9 393 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 RAB11FIP5Q9BXF6 653 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 EPN3Q9H201 632 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 P2RY12Q9H244 342 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 FAM60AQ9NP50 221 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 MARCH4Q9P2E8 410 aaPredicted RBP18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 SRPK3Q9UPE1 567 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 PPP2R2CQ9Y2T4 447 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 PCDHGA9Q9Y5G4 932 aaKnown RBP18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 ANKRD12Q6UB98 2062 aa18.4■□□□□ 0.54
CCDC28A-203ENST00000617445 H3BMH7 237 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 H3BMM5 538 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 S1PR4O95977 384 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 CAPN1P07384 714 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 CD9P21926 228 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 NMBRP28336 390 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 MAGEA6P43360 314 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 GABRA4P48169 554 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 CRADDP78560 199 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 NCF4Q15080 339 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 ZIC1Q15915 447 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 LCN10Q6JVE6 187 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 RHBDD2Q6NTF9 364 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 FAM198BQ6UWH4 519 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 OTOAQ7RTW8 1153 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 LDB1Q86U70 411 aaPredicted RBP18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 TRIM73Q86UV7 250 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 VRK3Q8IV63 474 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 DNAJC22Q8N4W6 341 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 PRELID2Q8N945 189 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 OR2L8Q8NGY9 312 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 ADAMTS17Q8TE56 1095 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 DENND1AQ8TEH3 1009 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 PBKQ96KB5 322 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 IP6K3Q96PC2 410 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 NAP1L3Q99457 506 aaPredicted RBP18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 ING2Q9H160 280 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 ACSS2Q9NR19 701 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 INTS7Q9NVH2 962 aaKnown RBP18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 PLAGL1Q9UM63 463 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 SOX13Q9UN79 622 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 PLCL2Q9UPR0 1127 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 JRKLQ9Y4A0 524 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 PCDHGB7Q9Y5F8 929 aa18.39■□□□□ 0.53
CCDC28A-203ENST00000617445 MAGEB16A2A368 324 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 IQCF5A8MTL0 148 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 VAPBO95292 243 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 MGAT1P26572 445 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 CXCR5P32302 372 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 ADARP55265 1226 aaKnown RBP18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 ZNF385CQ66K41 422 aaPredicted RBP18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 MED25Q71SY5 747 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 KRT222Q8N1A0 295 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 RAB42Q8N4Z0 105 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 TMEM102Q8N9M5 508 aaPredicted RBP18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 CFAP61Q8NHU2 1237 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 LKAAEAR1Q8TD35 194 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 MAGEC3Q8TD91 643 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 RAD51AP1Q96B01 352 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 FOPNLQ96NB1 174 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 MENTQ9BUN1 341 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 SLC39A10Q9ULF5 831 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 TTC7AQ9ULT0 858 aaPredicted RBP18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 G3BP2Q9UN86 482 aaKnown RBP18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 VPS9D1Q9Y2B5 631 aa18.38■□□□□ 0.53
CCDC28A-203ENST00000617445 FLNCQ14315 2725 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 FER1L5A0AVI2 2057 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 RASGRF2O14827 1237 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 ZSCAN9O15535 394 aaPredicted RBP18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 PAMP19021 973 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 PEBP1P30086 187 aaKnown RBP18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 CCNFP41002 786 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 RRADP55042 308 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 DCDP81605 110 aaKnown RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms