RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 C17orf62Q9BQA9 187 aa17.13■□□□□ 0.33
HDDC3-201ENST00000330334 DHRS4Q9BTZ2 278 aa17.13■□□□□ 0.33
HDDC3-201ENST00000330334 EPN3Q9H201 632 aa17.13■□□□□ 0.33
HDDC3-201ENST00000330334 MARCH4Q9P2E8 410 aaPredicted RBP17.13■□□□□ 0.33
HDDC3-201ENST00000330334 SNX7Q9UNH6 387 aa17.13■□□□□ 0.33
HDDC3-201ENST00000330334 TP53TG5Q9Y2B4 290 aa17.13■□□□□ 0.33
HDDC3-201ENST00000330334 PCDHGA9Q9Y5G4 932 aaKnown RBP17.13■□□□□ 0.33
HDDC3-201ENST00000330334 FLNCQ14315 2725 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 CD63P08962 238 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 AGXTP21549 392 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 PKLRP30613 574 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 TMED2Q15363 201 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 RHBDD2Q6NTF9 364 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 TLDC1Q6P9B6 456 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 FAM198BQ6UWH4 519 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 ASB18Q6ZVZ8 466 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 LDB1Q86U70 411 aaPredicted RBP17.12■□□□□ 0.33
HDDC3-201ENST00000330334 DCUN1D3Q8IWE4 304 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 DNAJC22Q8N4W6 341 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 ENDOVQ8N8Q3 282 aaKnown RBP17.12■□□□□ 0.33
HDDC3-201ENST00000330334 PRELID2Q8N945 189 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 N4BP2L2Q92802 583 aaPredicted RBP17.12■□□□□ 0.33
HDDC3-201ENST00000330334 TCF12Q99081 682 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 SLC7A5P2Q9GIP4 190 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 KLHL25Q9H0H3 589 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 MLXIPLQ9NP71 852 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 GNPTGQ9UJJ9 305 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 PPP2R2CQ9Y2T4 447 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 MRFAP1Q9Y605 127 aa17.12■□□□□ 0.33
HDDC3-201ENST00000330334 IQCF5A8MTL0 148 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 NDUFS3O75489 264 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 OR2B3O76000 313 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 FKBP9O95302 570 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 CD9P21926 228 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 ARNTP27540 789 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 NMBRP28336 390 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 ADARP55265 1226 aaKnown RBP17.11■□□□□ 0.33
HDDC3-201ENST00000330334 CRADDP78560 199 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 SARNPP82979 210 aaKnown RBP17.11■□□□□ 0.33
HDDC3-201ENST00000330334 FOXK1P85037 733 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 GRB7Q14451 532 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 NCF4Q15080 339 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 PAPD7Q5XG87 772 aaKnown RBP17.11■□□□□ 0.33
HDDC3-201ENST00000330334 PTRHD1Q6GMV3 140 aaKnown RBP17.11■□□□□ 0.33
HDDC3-201ENST00000330334 MRNIPQ6NTE8 343 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 SDCCAG8Q86SQ7 713 aaPredicted RBP17.11■□□□□ 0.33
HDDC3-201ENST00000330334 TRIM73Q86UV7 250 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 LINC01555Q8NAE3 123 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 PROKR1Q8TCW9 393 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 LKAAEAR1Q8TD35 194 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 TRIM55Q9BYV6 548 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 ING2Q9H160 280 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 ENAMQ9NRM1 1142 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 TTC7AQ9ULT0 858 aaPredicted RBP17.11■□□□□ 0.33
HDDC3-201ENST00000330334 SOX13Q9UN79 622 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 PLCL2Q9UPR0 1127 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 JRKLQ9Y4A0 524 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 NBASA2RRP1 2371 aa17.11■□□□□ 0.33
HDDC3-201ENST00000330334 ISM1B1AKI9 464 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 C9J4A7 227 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 K7EM74 188 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 PFDN6O15212 129 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 CEACAM4O75871 244 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 S1PR4O95977 384 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 MGAT1P26572 445 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 PEBP1P30086 187 aaKnown RBP17.1■□□□□ 0.33
HDDC3-201ENST00000330334 CXCR5P32302 372 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 CSE1LP55060 971 aaKnown RBP17.1■□□□□ 0.33
HDDC3-201ENST00000330334 TYSND1Q2T9J0 566 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 RNF187Q5TA31 235 aaPredicted RBP17.1■□□□□ 0.33
HDDC3-201ENST00000330334 TTC23LQ6PF05 361 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 RASGEF1CQ8N431 466 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 TEX19Q8NA77 164 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 OR2L8Q8NGY9 312 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 GSDMBQ8TAX9 411 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 MFSD3Q96ES6 412 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 RAB11FIP5Q9BXF6 653 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 PLAGL1Q9UM63 463 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 SRPK3Q9UPE1 567 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 PADI2Q9Y2J8 665 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 PCDHGB7Q9Y5F8 929 aa17.1■□□□□ 0.33
HDDC3-201ENST00000330334 MAGEB16A2A368 324 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 H3BMM5 538 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 RASGRF2O14827 1237 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 ZSCAN9O15535 394 aaPredicted RBP17.09■□□□□ 0.33
HDDC3-201ENST00000330334 HCRTR1O43613 425 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 KLF7O75840 302 aaPredicted RBP17.09■□□□□ 0.33
HDDC3-201ENST00000330334 DNAJB5O75953 348 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 VAPBO95292 243 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 KCNJ11Q14654 390 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 PTCHD3Q3KNS1 767 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 MED25Q71SY5 747 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 OTOAQ7RTW8 1153 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 KRT222Q8N1A0 295 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 TMEM102Q8N9M5 508 aaPredicted RBP17.09■□□□□ 0.33
HDDC3-201ENST00000330334 HMGCLL1Q8TB92 370 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 DENND1AQ8TEH3 1009 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 RAD51AP1Q96B01 352 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 PBKQ96KB5 322 aa17.09■□□□□ 0.33
HDDC3-201ENST00000330334 BIRC8Q96P09 236 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms