RNA–Protein interactions for RNA: YNL189W

SRP1, Transcript of Karyopherin alpha homolog, yeast

Gene SRP1, Length 1,629 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SRP1	YNL189W	RAD27	P26793	382 aa		4.92	□□□□□ -1.62
SRP1	YNL189W	DOT1	Q04089	582 aa	Known RBP	4.92	□□□□□ -1.62
SRP1	YNL189W	OPI10	Q08202	246 aa		4.92	□□□□□ -1.62
SRP1	YNL189W	SSF2	Q12153	453 aa	Predicted RBP	4.92	□□□□□ -1.62
SRP1	YNL189W	YDR215C	Q12240	137 aa		4.92	□□□□□ -1.62
SRP1	YNL189W	TRP2	P00899	507 aa	Known RBP	4.91	□□□□□ -1.62
SRP1	YNL189W	MOT2	P34909	587 aa	Known RBP	4.91	□□□□□ -1.62
SRP1	YNL189W	GPT2	P36148	743 aa		4.91	□□□□□ -1.62
SRP1	YNL189W	ARL1	P38116	183 aa	Known RBP	4.91	□□□□□ -1.62
SRP1	YNL189W	OCA5	P38738	679 aa		4.91	□□□□□ -1.62
SRP1	YNL189W	NMD3	P38861	518 aa	Known RBP	4.91	□□□□□ -1.62
SRP1	YNL189W	ORC1	P54784	914 aa	Predicted RBP	4.91	□□□□□ -1.62
SRP1	YNL189W	PUS1	Q12211	544 aa	Known RBP	4.91	□□□□□ -1.62
SRP1	YNL189W	TAF13	P11747	167 aa		4.9	□□□□□ -1.62
SRP1	YNL189W	BAS1	P22035	811 aa		4.9	□□□□□ -1.62
SRP1	YNL189W	YAR028W	P39548	234 aa		4.9	□□□□□ -1.62
SRP1	YNL189W	YLR225C	Q05948	407 aa	Known RBP	4.9	□□□□□ -1.62
SRP1	YNL189W	AVO1	Q08236	1176 aa		4.9	□□□□□ -1.62
SRP1	YNL189W	TMA46	Q12000	345 aa	Known RBP	4.9	□□□□□ -1.62
SRP1	YNL189W	YOR223W	Q12015	292 aa		4.9	□□□□□ -1.62
SRP1	YNL189W	AI3	P03877	415 aa		4.9	□□□□□ -1.63
SRP1	YNL189W	ABD1	P32783	436 aa	Predicted RBP	4.9	□□□□□ -1.63
SRP1	YNL189W	TYW3	P53177	273 aa		4.9	□□□□□ -1.63
SRP1	YNL189W	TIF35	Q04067	274 aa	Known RBP	4.9	□□□□□ -1.63
SRP1	YNL189W	FAL1	Q12099	399 aa	Known RBP	4.9	□□□□□ -1.63
SRP1	YNL189W	WRS1	Q12109	432 aa	Known RBP	4.9	□□□□□ -1.63
SRP1	YNL189W	SYP1	P25623	870 aa	Known RBP	4.89	□□□□□ -1.63
SRP1	YNL189W	NAM7	P30771	971 aa	Known RBP	4.89	□□□□□ -1.63
SRP1	YNL189W	LYP1	P32487	611 aa		4.89	□□□□□ -1.63
SRP1	YNL189W	SFA1	P32771	386 aa		4.89	□□□□□ -1.63
SRP1	YNL189W	SEA4	P38164	1038 aa		4.89	□□□□□ -1.63
SRP1	YNL189W	ALG3	P38179	458 aa		4.89	□□□□□ -1.63
SRP1	YNL189W	TAT2	P38967	592 aa		4.89	□□□□□ -1.63
SRP1	YNL189W	YMR187C	Q03236	431 aa		4.89	□□□□□ -1.63
SRP1	YNL189W	AOS1	Q06624	347 aa		4.89	□□□□□ -1.63
SRP1	YNL189W	GRX1	P25373	110 aa	Known RBP	4.88	□□□□□ -1.63
SRP1	YNL189W	MSH4	P40965	878 aa	Predicted RBP	4.88	□□□□□ -1.63
SRP1	YNL189W	NNF1	P47149	201 aa		4.88	□□□□□ -1.63
SRP1	YNL189W	EAR1	Q03212	550 aa		4.88	□□□□□ -1.63
SRP1	YNL189W	MCA1	Q08601	432 aa		4.88	□□□□□ -1.63
SRP1	YNL189W	YLL054C	Q12244	843 aa		4.88	□□□□□ -1.63
SRP1	YNL189W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
SRP1	YNL189W	SPF1	P39986	1215 aa	Known RBP	4.87	□□□□□ -1.63
SRP1	YNL189W	RKM2	Q03942	479 aa		4.87	□□□□□ -1.63
SRP1	YNL189W	YPL066W	Q12194	479 aa		4.87	□□□□□ -1.63
SRP1	YNL189W	PTC5	Q12511	572 aa		4.87	□□□□□ -1.63
SRP1	YNL189W	INO1	P11986	533 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	RET1	P22276	1149 aa	Known RBP	4.86	□□□□□ -1.63
SRP1	YNL189W	MLS1	P30952	554 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	IOC3	P43596	787 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	ENT3	P47160	408 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	RSA3	Q05942	220 aa	Known RBP	4.86	□□□□□ -1.63
SRP1	YNL189W	TDA5	Q06417	326 aa	Known RBP	4.86	□□□□□ -1.63
SRP1	YNL189W	DBP5	P20449	482 aa	Known RBP	4.86	□□□□□ -1.63
SRP1	YNL189W	RSC6	P25632	483 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	STE5	P32917	917 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	ATG14	P38270	344 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	QNS1	P38795	714 aa	Known RBP	4.86	□□□□□ -1.63
SRP1	YNL189W	AKR1	P39010	764 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	GPB2	P39717	880 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	MPH1	P40562	993 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	CNN1	P43618	361 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	YLR257W	Q06146	321 aa	Known RBP	4.86	□□□□□ -1.63
SRP1	YNL189W	YPR053C	Q6Q5F3	151 aa		4.86	□□□□□ -1.63
SRP1	YNL189W	NFS1	P25374	497 aa		4.85	□□□□□ -1.63
SRP1	YNL189W	TAT1	P38085	619 aa		4.85	□□□□□ -1.63
SRP1	YNL189W	MCM7	P38132	845 aa		4.85	□□□□□ -1.63
SRP1	YNL189W	ARI1	P53111	347 aa	Known RBP	4.85	□□□□□ -1.63
SRP1	YNL189W	LAP2	Q10740	671 aa		4.85	□□□□□ -1.63
SRP1	YNL189W	YOL098C	Q12496	1037 aa		4.85	□□□□□ -1.63
SRP1	YNL189W	SKN7	P38889	622 aa		4.84	□□□□□ -1.63
SRP1	YNL189W	YGL176C	P46945	554 aa		4.84	□□□□□ -1.63
SRP1	YNL189W	GIC2	Q06648	383 aa		4.84	□□□□□ -1.63
SRP1	YNL189W	RPS4A	P0CX35	261 aa	Known RBP	4.83	□□□□□ -1.64
SRP1	YNL189W	RPS4B	P0CX36	261 aa	Known RBP	4.83	□□□□□ -1.64
SRP1	YNL189W	RAD4	P14736	754 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	KIP1	P28742	1111 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	SMY2	P32909	740 aa	Known RBP	4.83	□□□□□ -1.64
SRP1	YNL189W	VBA5	P36172	582 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	SPO20	Q04359	397 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	YER152C	P10356	443 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	AGP1	P25376	633 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	WHI3	P34761	661 aa	Known RBP	4.83	□□□□□ -1.64
SRP1	YNL189W	YBR184W	P38299	523 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	MBP1	P39678	833 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	YFL054C	P43549	646 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	LSB3	P43603	459 aa	Known RBP	4.83	□□□□□ -1.64
SRP1	YNL189W	YJL045W	P47052	634 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	ALT1	P52893	592 aa		4.83	□□□□□ -1.64
SRP1	YNL189W	NNK1	P36003	928 aa		4.82	□□□□□ -1.64
SRP1	YNL189W	VPS53	P47061	822 aa		4.82	□□□□□ -1.64
SRP1	YNL189W	TPP1	Q03796	238 aa		4.82	□□□□□ -1.64
SRP1	YNL189W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
SRP1	YNL189W	YTA7	P40340	1379 aa		4.82	□□□□□ -1.64
SRP1	YNL189W	DBP2	P24783	546 aa	Known RBP	4.81	□□□□□ -1.64
SRP1	YNL189W	SBA1	P28707	216 aa	Known RBP	4.81	□□□□□ -1.64
SRP1	YNL189W	RGD1	P38339	666 aa		4.81	□□□□□ -1.64
SRP1	YNL189W	HSE1	P38753	452 aa		4.81	□□□□□ -1.64
SRP1	YNL189W	SIP5	P40210	489 aa	Known RBP	4.81	□□□□□ -1.64
SRP1	YNL189W	HUL5	P53119	910 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 93.5 ms