RNA–Protein interactions for RNA: YLR336C

SGD1, Transcript of Essential nuclear protein, yeast

Gene SGD1, Length 2,700 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SGD1	YLR336C	FAR11	P53917	953 aa		3.12	□□□□□ -1.91
SGD1	YLR336C	WRS1	Q12109	432 aa	Known RBP	3.12	□□□□□ -1.91
SGD1	YLR336C	GRX1	P25373	110 aa	Known RBP	3.11	□□□□□ -1.91
SGD1	YLR336C	RAD27	P26793	382 aa		3.11	□□□□□ -1.91
SGD1	YLR336C	TYW3	P53177	273 aa		3.11	□□□□□ -1.91
SGD1	YLR336C	NCE103	P53615	221 aa		3.11	□□□□□ -1.91
SGD1	YLR336C	BAS1	P22035	811 aa		3.11	□□□□□ -1.91
SGD1	YLR336C	PRY1	P47032	299 aa		3.11	□□□□□ -1.91
SGD1	YLR336C	TIF35	Q04067	274 aa	Known RBP	3.11	□□□□□ -1.91
SGD1	YLR336C	FAL1	Q12099	399 aa	Known RBP	3.11	□□□□□ -1.91
SGD1	YLR336C	MOT2	P34909	587 aa	Known RBP	3.1	□□□□□ -1.91
SGD1	YLR336C	SEA4	P38164	1038 aa		3.1	□□□□□ -1.91
SGD1	YLR336C	ICP55	P40051	511 aa		3.1	□□□□□ -1.91
SGD1	YLR336C	IOC3	P43596	787 aa		3.1	□□□□□ -1.91
SGD1	YLR336C	ELA1	P53861	379 aa	Predicted RBP	3.1	□□□□□ -1.91
SGD1	YLR336C	YLR225C	Q05948	407 aa	Known RBP	3.1	□□□□□ -1.91
SGD1	YLR336C	YOR223W	Q12015	292 aa		3.1	□□□□□ -1.91
SGD1	YLR336C	SYP1	P25623	870 aa	Known RBP	3.1	□□□□□ -1.91
SGD1	YLR336C	LYP1	P32487	611 aa		3.1	□□□□□ -1.91
SGD1	YLR336C	ABD1	P32783	436 aa	Predicted RBP	3.1	□□□□□ -1.91
SGD1	YLR336C	MCX1	P38323	520 aa	Predicted RBP	3.1	□□□□□ -1.91
SGD1	YLR336C	YAR028W	P39548	234 aa		3.1	□□□□□ -1.91
SGD1	YLR336C	SLN1	P39928	1220 aa	Predicted RBP	3.1	□□□□□ -1.91
SGD1	YLR336C	NSG2	P53898	299 aa		3.1	□□□□□ -1.91
SGD1	YLR336C	DOT1	Q04089	582 aa	Known RBP	3.1	□□□□□ -1.91
SGD1	YLR336C	PUS1	Q12211	544 aa	Known RBP	3.1	□□□□□ -1.91
SGD1	YLR336C	YCK2	P23292	546 aa	Known RBP	3.09	□□□□□ -1.91
SGD1	YLR336C	ALG3	P38179	458 aa		3.09	□□□□□ -1.91
SGD1	YLR336C	SPF1	P39986	1215 aa	Known RBP	3.09	□□□□□ -1.91
SGD1	YLR336C	ENT3	P47160	408 aa		3.09	□□□□□ -1.91
SGD1	YLR336C	RKM2	Q03942	479 aa		3.09	□□□□□ -1.91
SGD1	YLR336C	AOS1	Q06624	347 aa		3.09	□□□□□ -1.91
SGD1	YLR336C	YOL098C	Q12496	1037 aa		3.09	□□□□□ -1.91
SGD1	YLR336C	YTA7	P40340	1379 aa		3.09	□□□□□ -1.91
SGD1	YLR336C	AI3	P03877	415 aa		3.09	□□□□□ -1.92
SGD1	YLR336C	STE5	P32917	917 aa		3.09	□□□□□ -1.92
SGD1	YLR336C	GPT2	P36148	743 aa		3.09	□□□□□ -1.92
SGD1	YLR336C	AVO1	Q08236	1176 aa		3.09	□□□□□ -1.92
SGD1	YLR336C	YPL066W	Q12194	479 aa		3.09	□□□□□ -1.92
SGD1	YLR336C	YDR215C	Q12240	137 aa		3.09	□□□□□ -1.92
SGD1	YLR336C	YLL054C	Q12244	843 aa		3.09	□□□□□ -1.92
SGD1	YLR336C	SFA1	P32771	386 aa		3.08	□□□□□ -1.92
SGD1	YLR336C	NMD3	P38861	518 aa	Known RBP	3.08	□□□□□ -1.92
SGD1	YLR336C	LSB3	P43603	459 aa	Known RBP	3.08	□□□□□ -1.92
SGD1	YLR336C	TDA5	Q06417	326 aa	Known RBP	3.08	□□□□□ -1.92
SGD1	YLR336C	PTC5	Q12511	572 aa		3.08	□□□□□ -1.92
SGD1	YLR336C	INO1	P11986	533 aa		3.08	□□□□□ -1.92
SGD1	YLR336C	DBP5	P20449	482 aa	Known RBP	3.08	□□□□□ -1.92
SGD1	YLR336C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	3.08	□□□□□ -1.92	not detected
SGD1	YLR336C	MSH4	P40965	878 aa	Predicted RBP	3.08	□□□□□ -1.92
SGD1	YLR336C	CNN1	P43618	361 aa		3.08	□□□□□ -1.92
SGD1	YLR336C	RET1	P22276	1149 aa	Known RBP	3.07	□□□□□ -1.92
SGD1	YLR336C	MLS1	P30952	554 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	ATG14	P38270	344 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	MPH1	P40562	993 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	AGP1	P25376	633 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	VBA5	P36172	582 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	QNS1	P38795	714 aa	Known RBP	3.07	□□□□□ -1.92
SGD1	YLR336C	EAR1	Q03212	550 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	YMR187C	Q03236	431 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	SPO20	Q04359	397 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	NSE3	Q05541	303 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	RSA3	Q05942	220 aa	Known RBP	3.07	□□□□□ -1.92
SGD1	YLR336C	LAP2	Q10740	671 aa		3.07	□□□□□ -1.92
SGD1	YLR336C	RAD4	P14736	754 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	NAM7	P30771	971 aa	Known RBP	3.06	□□□□□ -1.92
SGD1	YLR336C	MCM7	P38132	845 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	YBR184W	P38299	523 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	YGL176C	P46945	554 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	MCA1	Q08601	432 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	RSC6	P25632	483 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	YJL049W	P47048	450 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	ARI1	P53111	347 aa	Known RBP	3.06	□□□□□ -1.92
SGD1	YLR336C	HUL5	P53119	910 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	YLR257W	Q06146	321 aa	Known RBP	3.06	□□□□□ -1.92
SGD1	YLR336C	BDF2	Q07442	638 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	NFS1	P25374	497 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	SBA1	P28707	216 aa	Known RBP	3.06	□□□□□ -1.92
SGD1	YLR336C	KIP1	P28742	1111 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	SRP40	P32583	406 aa	Predicted RBP	3.06	□□□□□ -1.92
SGD1	YLR336C	SMY2	P32909	740 aa	Known RBP	3.06	□□□□□ -1.92
SGD1	YLR336C	GPB2	P39717	880 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	ALT1	P52893	592 aa		3.06	□□□□□ -1.92
SGD1	YLR336C	YER152C	P10356	443 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	NNK1	P36003	928 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	RGD1	P38339	666 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	YHR020W	P38708	688 aa	Known RBP	3.05	□□□□□ -1.92
SGD1	YLR336C	SKN7	P38889	622 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	MBP1	P39678	833 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	SIP5	P40210	489 aa	Known RBP	3.05	□□□□□ -1.92
SGD1	YLR336C	VPS53	P47061	822 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	NAN1	Q02931	896 aa	Known RBP	3.05	□□□□□ -1.92
SGD1	YLR336C	SHE9	Q04172	456 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	GIC2	Q06648	383 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	CDC53	Q12018	815 aa	Known RBP	3.05	□□□□□ -1.92
SGD1	YLR336C	RKM4	Q12504	494 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	YKL107W	P34251	309 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	HSE1	P38753	452 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	AKR1	P39010	764 aa		3.05	□□□□□ -1.92
SGD1	YLR336C	PFD1	P46988	109 aa		3.05	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 33.2 ms