RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeast

Gene SHH4, Length 507 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHH4	YLR164W	CIT3	P43635	486 aa		11.34	□□□□□ -0.59
SHH4	YLR164W	SOL4	P53315	255 aa		11.34	□□□□□ -0.59
SHH4	YLR164W	TMA64	Q04600	565 aa	Known RBP	11.34	□□□□□ -0.59
SHH4	YLR164W	COG8	Q04632	607 aa		11.34	□□□□□ -0.59
SHH4	YLR164W	EIS1	Q05050	843 aa	Known RBP	11.34	□□□□□ -0.59
SHH4	YLR164W	VIP1	Q06685	1146 aa	Known RBP	11.34	□□□□□ -0.59
SHH4	YLR164W	AIM44	Q99299	758 aa		11.34	□□□□□ -0.59
SHH4	YLR164W	DDP1	Q99321	188 aa	Known RBP	11.34	□□□□□ -0.59
SHH4	YLR164W	RAD18	P10862	487 aa		11.33	□□□□□ -0.6
SHH4	YLR164W	RFT1	P38206	574 aa	Predicted RBP	11.33	□□□□□ -0.6
SHH4	YLR164W	PHO88	P38264	188 aa	Predicted RBP	11.33	□□□□□ -0.6
SHH4	YLR164W	CEX1	Q12453	761 aa		11.33	□□□□□ -0.6
SHH4	YLR164W	TRS33	Q99394	268 aa		11.33	□□□□□ -0.6
SHH4	YLR164W	GPA1	P08539	472 aa		11.32	□□□□□ -0.6
SHH4	YLR164W	CLC1	P17891	233 aa		11.32	□□□□□ -0.6
SHH4	YLR164W	ASF1	P32447	279 aa		11.32	□□□□□ -0.6
SHH4	YLR164W	OCT1	P35999	772 aa		11.32	□□□□□ -0.6
SHH4	YLR164W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	11.32	□□□□□ -0.6	not detected
SHH4	YLR164W	PAN5	P38787	379 aa		11.32	□□□□□ -0.6
SHH4	YLR164W	STT3	P39007	718 aa	Known RBP	11.32	□□□□□ -0.6
SHH4	YLR164W	YER130C	P39959	443 aa		11.32	□□□□□ -0.6
SHH4	YLR164W	CTR1	P49573	406 aa		11.32	□□□□□ -0.6
SHH4	YLR164W	RRT6	P53117	311 aa	Predicted RBP	11.32	□□□□□ -0.6
SHH4	YLR164W	TRS120	Q04183	1289 aa		11.32	□□□□□ -0.6
SHH4	YLR164W	VMS1	Q04311	632 aa	Known RBP	11.32	□□□□□ -0.6
SHH4	YLR164W	UBX5	Q06682	500 aa		11.32	□□□□□ -0.6
SHH4	YLR164W	TYW1	Q08960	810 aa	Known RBP	11.32	□□□□□ -0.6
SHH4	YLR164W	SAM1	P10659	382 aa	Known RBP	11.31	□□□□□ -0.6
SHH4	YLR164W	TGL1	P34163	548 aa		11.31	□□□□□ -0.6
SHH4	YLR164W	FMS1	P50264	508 aa		11.31	□□□□□ -0.6
SHH4	YLR164W	YGR273C	P53329	174 aa		11.31	□□□□□ -0.6
SHH4	YLR164W	RET3	P53600	189 aa		11.31	□□□□□ -0.6
SHH4	YLR164W	SUB2	Q07478	446 aa	Known RBP	11.31	□□□□□ -0.6
SHH4	YLR164W	OXR1	Q08952	273 aa		11.31	□□□□□ -0.6
SHH4	YLR164W	RPL8A	P17076	256 aa	Known RBP	11.3	□□□□□ -0.6
SHH4	YLR164W	NPR3	P38742	1146 aa		11.3	□□□□□ -0.6
SHH4	YLR164W	ATG32	P40458	529 aa		11.3	□□□□□ -0.6
SHH4	YLR164W	YPT11	P48559	417 aa		11.3	□□□□□ -0.6
SHH4	YLR164W	LSB1	P53281	241 aa		11.3	□□□□□ -0.6
SHH4	YLR164W	DSE4	P53753	1117 aa		11.3	□□□□□ -0.6
SHH4	YLR164W	SSL2	Q00578	843 aa		11.3	□□□□□ -0.6
SHH4	YLR164W	YOR296W	Q08748	1289 aa		11.3	□□□□□ -0.6
SHH4	YLR164W	TFC8	Q12308	588 aa		11.3	□□□□□ -0.6
SHH4	YLR164W	THR4	P16120	514 aa	Known RBP	11.29	□□□□□ -0.6
SHH4	YLR164W	ALG1	P16661	449 aa		11.29	□□□□□ -0.6
SHH4	YLR164W	RSM25	P40496	264 aa		11.29	□□□□□ -0.6
SHH4	YLR164W	YGR153W	P48238	217 aa		11.29	□□□□□ -0.6
SHH4	YLR164W	AIM33	Q04516	312 aa		11.29	□□□□□ -0.6
SHH4	YLR164W	YLR326W	Q06170	240 aa	Known RBP	11.29	□□□□□ -0.6
SHH4	YLR164W	MMR1	Q06324	491 aa		11.29	□□□□□ -0.6
SHH4	YLR164W	HVG1	P0CE11	249 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	MCM3	P24279	971 aa	Known RBP	11.28	□□□□□ -0.6
SHH4	YLR164W	SRP40	P32583	406 aa	Predicted RBP	11.28	□□□□□ -0.6
SHH4	YLR164W	UGA4	P32837	571 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	IXR1	P33417	597 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	SHP1	P34223	423 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	RKM3	P38222	552 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	SUL1	P38359	859 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	TPM2	P40414	161 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	FYV10	P40492	516 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	CUE3	P53137	624 aa	Known RBP	11.28	□□□□□ -0.6
SHH4	YLR164W	RSC1	P53236	928 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	BNI5	P53890	448 aa	Known RBP	11.28	□□□□□ -0.6
SHH4	YLR164W	SLK19	Q08581	821 aa	Known RBP	11.28	□□□□□ -0.6
SHH4	YLR164W	TIP41	Q12199	356 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	NBL1	Q3E7Y6	73 aa		11.28	□□□□□ -0.6
SHH4	YLR164W	TUF1	P02992	437 aa	Known RBP	11.27	□□□□□ -0.61
SHH4	YLR164W	ORC6	P38826	435 aa		11.27	□□□□□ -0.61
SHH4	YLR164W	GAA1	P39012	614 aa		11.27	□□□□□ -0.61
SHH4	YLR164W	PER1	P25625	357 aa		11.26	□□□□□ -0.61
SHH4	YLR164W	FAR11	P53917	953 aa		11.26	□□□□□ -0.61
SHH4	YLR164W	ALD6	P54115	500 aa	Known RBP	11.26	□□□□□ -0.61
SHH4	YLR164W	SPH1	Q06160	661 aa		11.26	□□□□□ -0.61
SHH4	YLR164W	WHI4	Q07655	649 aa	Known RBP	11.26	□□□□□ -0.61
SHH4	YLR164W	UTR4	P32626	227 aa		11.25	□□□□□ -0.61
SHH4	YLR164W	SAS3	P34218	831 aa		11.25	□□□□□ -0.61
SHH4	YLR164W	ORC4	P54791	529 aa		11.25	□□□□□ -0.61
SHH4	YLR164W	ADY4	Q05955	493 aa		11.25	□□□□□ -0.61
SHH4	YLR164W	DUS3	Q06053	668 aa	Known RBP	11.25	□□□□□ -0.61
SHH4	YLR164W	SGD1	Q06132	899 aa		11.25	□□□□□ -0.61
SHH4	YLR164W	ARP6	Q12509	438 aa		11.25	□□□□□ -0.61
SHH4	YLR164W	HIS4	P00815	799 aa	Known RBP	11.24	□□□□□ -0.61
SHH4	YLR164W	BRE2	P43132	505 aa		11.24	□□□□□ -0.61
SHH4	YLR164W	DAK2	P43550	591 aa		11.24	□□□□□ -0.61
SHH4	YLR164W	NET1	P47035	1189 aa		11.24	□□□□□ -0.61
SHH4	YLR164W	YGL039W	P53183	348 aa	Known RBP	11.24	□□□□□ -0.61
SHH4	YLR164W	PSR2	Q07949	397 aa		11.24	□□□□□ -0.61
SHH4	YLR164W	RKM4	Q12504	494 aa		11.24	□□□□□ -0.61
SHH4	YLR164W	ATE1	P16639	503 aa		11.23	□□□□□ -0.61
SHH4	YLR164W	PWP2	P25635	923 aa	Known RBP	11.23	□□□□□ -0.61
SHH4	YLR164W	SEC20	P28791	383 aa		11.23	□□□□□ -0.61
SHH4	YLR164W	BMH1	P29311	267 aa	Known RBP	11.23	□□□□□ -0.61
SHH4	YLR164W	YKT6	P36015	200 aa	Known RBP	11.23	□□□□□ -0.61
SHH4	YLR164W	UBP11	P36026	717 aa		11.23	□□□□□ -0.61
SHH4	YLR164W	ERG7	P38604	731 aa		11.23	□□□□□ -0.61
SHH4	YLR164W	ETP1	P38748	585 aa	Known RBP	11.23	□□□□□ -0.61
SHH4	YLR164W	VAB2	P40003	282 aa		11.23	□□□□□ -0.61
SHH4	YLR164W	UBA2	P52488	636 aa		11.23	□□□□□ -0.61
SHH4	YLR164W	LIF1	P53150	421 aa		11.23	□□□□□ -0.61
SHH4	YLR164W	SDA1	P53313	767 aa	Known RBP	11.23	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 91.8 ms