RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C CBP3P21560 335 aa12.32□□□□□ -0.44
SPT8YLR055C YBL028CP38202 106 aa12.32□□□□□ -0.44
SPT8YLR055C YHL050CP38721 697 aa12.32□□□□□ -0.44
SPT8YLR055C KEL1P38853 1164 aaKnown RBP12.32□□□□□ -0.44
SPT8YLR055C MVP1P40959 511 aaKnown RBP12.32□□□□□ -0.44
SPT8YLR055C HCR1Q05775 265 aaKnown RBP12.32□□□□□ -0.44
SPT8YLR055C CSR2Q12734 1121 aa12.32□□□□□ -0.44
SPT8YLR055C MPH3P0CE00 602 aa12.32□□□□□ -0.44
SPT8YLR055C GAL2P13181 574 aa12.32□□□□□ -0.44
SPT8YLR055C REI1P38344 393 aaPredicted RBP12.32□□□□□ -0.44
SPT8YLR055C CAF130P53280 1122 aaPredicted RBP12.32□□□□□ -0.44
SPT8YLR055C UFD2P54860 961 aa12.32□□□□□ -0.44
SPT8YLR055C EST2Q06163 884 aa12.32□□□□□ -0.44
SPT8YLR055C RTT107P38850 1070 aa12.31□□□□□ -0.44
SPT8YLR055C RPN10P38886 268 aaKnown RBP12.31□□□□□ -0.44
SPT8YLR055C CRG1P38892 291 aaRIP-Chip data12.31□□□□□ -0.44 RIP-Chip
SPT8YLR055C VID27P40157 782 aa12.31□□□□□ -0.44
SPT8YLR055C MGA2P40578 1113 aa12.31□□□□□ -0.44
SPT8YLR055C RPS15Q01855 142 aaKnown RBP12.31□□□□□ -0.44
SPT8YLR055C YDL124WQ07551 312 aaKnown RBP12.31□□□□□ -0.44
SPT8YLR055C SAC6P32599 642 aaKnown RBP12.3□□□□□ -0.44
SPT8YLR055C ADE17P38009 592 aaKnown RBP12.3□□□□□ -0.44
SPT8YLR055C GDT1P38301 280 aaPredicted RBP12.3□□□□□ -0.44
SPT8YLR055C PNT1P38969 423 aa12.3□□□□□ -0.44
SPT8YLR055C NDC80P40460 691 aa12.3□□□□□ -0.44
SPT8YLR055C GYL1Q04322 720 aa12.3□□□□□ -0.44
SPT8YLR055C GFD1Q04839 188 aaKnown RBP12.3□□□□□ -0.44
SPT8YLR055C SPN1Q06505 410 aaPredicted RBP12.3□□□□□ -0.44
SPT8YLR055C DCS2Q12123 353 aa12.3□□□□□ -0.44
SPT8YLR055C DPB3P27344 201 aa12.3□□□□□ -0.44
SPT8YLR055C RRP1P35178 278 aaPredicted RBP12.3□□□□□ -0.44
SPT8YLR055C TPS3P38426 1054 aaKnown RBP12.3□□□□□ -0.44
SPT8YLR055C ALF1P53904 254 aa12.3□□□□□ -0.44
SPT8YLR055C RAD61Q99359 647 aa12.3□□□□□ -0.44
SPT8YLR055C KIN1P13185 1064 aa12.29□□□□□ -0.44
SPT8YLR055C MSH3P25336 1018 aa12.29□□□□□ -0.44
SPT8YLR055C STO1P34160 861 aaKnown RBP12.29□□□□□ -0.44
SPT8YLR055C RER2P35196 286 aa12.29□□□□□ -0.44
SPT8YLR055C SAP190P36123 1033 aa12.29□□□□□ -0.44
SPT8YLR055C AKR1P39010 764 aa12.29□□□□□ -0.44
SPT8YLR055C ECM1P39715 212 aa12.29□□□□□ -0.44
SPT8YLR055C YMR102CQ03177 834 aa12.29□□□□□ -0.44
SPT8YLR055C VPS38Q05919 439 aa12.29□□□□□ -0.44
SPT8YLR055C AFT2Q08957 416 aa12.29□□□□□ -0.44
SPT8YLR055C PRE8P23639 250 aa12.28□□□□□ -0.44
SPT8YLR055C URA1P28272 314 aaPredicted RBP12.28□□□□□ -0.44
SPT8YLR055C MED8P38304 223 aa12.28□□□□□ -0.44
SPT8YLR055C SEC9P40357 651 aa12.28□□□□□ -0.44
SPT8YLR055C CUE3P53137 624 aaKnown RBP12.28□□□□□ -0.44
SPT8YLR055C ARP8Q12386 881 aaKnown RBP RIP-Chip data12.28□□□□□ -0.44not detected
SPT8YLR055C TUB2P02557 457 aaKnown RBP12.27□□□□□ -0.44
SPT8YLR055C PXL1P36166 706 aa12.27□□□□□ -0.44
SPT8YLR055C CCT4P39078 528 aaKnown RBP12.27□□□□□ -0.44
SPT8YLR055C FAR11P53917 953 aa12.27□□□□□ -0.44
SPT8YLR055C YOL098CQ12496 1037 aa12.27□□□□□ -0.44
SPT8YLR055C YOL087CQ99247 1116 aa12.27□□□□□ -0.44
SPT8YLR055C SNU71P53207 620 aaKnown RBP12.27□□□□□ -0.45
SPT8YLR055C MAL13P53338 473 aa12.27□□□□□ -0.45
SPT8YLR055C CDC6P09119 513 aa12.26□□□□□ -0.45
SPT8YLR055C SRM1P21827 482 aa12.26□□□□□ -0.45
SPT8YLR055C RRT6P53117 311 aaPredicted RBP12.26□□□□□ -0.45
SPT8YLR055C TYW1Q08960 810 aaKnown RBP12.26□□□□□ -0.45
SPT8YLR055C ANP1P32629 500 aa12.25□□□□□ -0.45
SPT8YLR055C CST26P38226 397 aa12.25□□□□□ -0.45
SPT8YLR055C RIT1P23796 513 aa12.25□□□□□ -0.45
SPT8YLR055C SWI4P25302 1093 aaKnown RBP12.25□□□□□ -0.45
SPT8YLR055C SEC65P29478 273 aa12.25□□□□□ -0.45
SPT8YLR055C YEL043WP32618 956 aa12.25□□□□□ -0.45
SPT8YLR055C MYO3P36006 1272 aa12.25□□□□□ -0.45
SPT8YLR055C VPS8P39702 1274 aa12.25□□□□□ -0.45
SPT8YLR055C DSN1P40568 576 aa12.25□□□□□ -0.45
SPT8YLR055C ATG9Q12142 997 aa12.25□□□□□ -0.45
SPT8YLR055C GET3Q12154 354 aaKnown RBP12.25□□□□□ -0.45
SPT8YLR055C RPO26P20435 155 aa12.24□□□□□ -0.45
SPT8YLR055C PRO3P32263 286 aaKnown RBP12.24□□□□□ -0.45
SPT8YLR055C BMH2P34730 273 aaKnown RBP12.24□□□□□ -0.45
SPT8YLR055C LAP2Q10740 671 aa12.24□□□□□ -0.45
SPT8YLR055C RNA1P11745 407 aaKnown RBP12.23□□□□□ -0.45
SPT8YLR055C VPS1P21576 704 aaKnown RBP12.23□□□□□ -0.45
SPT8YLR055C HDA1P53973 706 aa12.23□□□□□ -0.45
SPT8YLR055C CSC1Q06538 782 aa12.23□□□□□ -0.45
SPT8YLR055C ATG23Q06671 453 aa12.23□□□□□ -0.45
SPT8YLR055C CCC2P38995 1004 aa12.23□□□□□ -0.45
SPT8YLR055C ACA1P39970 489 aa12.23□□□□□ -0.45
SPT8YLR055C CTK3P46963 296 aaPredicted RBP12.23□□□□□ -0.45
SPT8YLR055C PEX29Q03370 554 aa12.23□□□□□ -0.45
SPT8YLR055C BMH1P29311 267 aaKnown RBP12.22□□□□□ -0.45
SPT8YLR055C PCS60P38137 543 aaKnown RBP RIP-Chip data12.22□□□□□ -0.45 RIP-Chip
SPT8YLR055C SPT8P38915 602 aa12.22□□□□□ -0.45
SPT8YLR055C PTK2P47116 818 aaKnown RBP12.22□□□□□ -0.45
SPT8YLR055C SKG3Q06315 1026 aa12.22□□□□□ -0.45
SPT8YLR055C ACE2P21192 770 aa12.21□□□□□ -0.45
SPT8YLR055C CHS3P29465 1165 aa12.21□□□□□ -0.45
SPT8YLR055C YET1P35723 206 aa12.21□□□□□ -0.45
SPT8YLR055C SHM1P37292 490 aaPredicted RBP12.21□□□□□ -0.45
SPT8YLR055C RGD1P38339 666 aa12.21□□□□□ -0.45
SPT8YLR055C BOP3P53958 396 aa12.21□□□□□ -0.45
SPT8YLR055C CDC37P06101 506 aaKnown RBP12.21□□□□□ -0.46
SPT8YLR055C SEC23P15303 768 aaKnown RBP12.21□□□□□ -0.46
SPT8YLR055C SLD2P34252 453 aa12.21□□□□□ -0.46
Retrieved 100 of 5,963 RNA–protein pairs in 38.1 ms