RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W DYS1P38791 387 aa5.08□□□□□ -1.6
SSL1YLR005W ORC1P54784 914 aaPredicted RBP5.08□□□□□ -1.6
SSL1YLR005W KIN4Q01919 800 aa5.08□□□□□ -1.6
SSL1YLR005W RIX7Q07844 837 aaKnown RBP5.08□□□□□ -1.6
SSL1YLR005W YOR296WQ08748 1289 aa5.08□□□□□ -1.6
SSL1YLR005W NUP145P49687 1317 aa5.08□□□□□ -1.6
SSL1YLR005W IDI1P15496 288 aa5.07□□□□□ -1.6
SSL1YLR005W NAR1P23503 491 aaKnown RBP5.07□□□□□ -1.6
SSL1YLR005W RMT2Q03305 412 aa5.07□□□□□ -1.6
SSL1YLR005W NYV1Q12255 253 aa5.07□□□□□ -1.6
SSL1YLR005W NHA1Q99271 985 aa5.07□□□□□ -1.6
SSL1YLR005W KAR2P16474 682 aaKnown RBP5.06□□□□□ -1.6
SSL1YLR005W TAT1P38085 619 aa5.06□□□□□ -1.6
SSL1YLR005W GIP1P38229 639 aa5.06□□□□□ -1.6
SSL1YLR005W PNP1Q05788 311 aa5.06□□□□□ -1.6
SSL1YLR005W RLF2Q12495 606 aa5.06□□□□□ -1.6
SSL1YLR005W MSN1P22148 382 aa5.05□□□□□ -1.6
SSL1YLR005W HSP104P31539 908 aaKnown RBP5.05□□□□□ -1.6
SSL1YLR005W DSD1P53095 428 aa5.05□□□□□ -1.6
SSL1YLR005W RAT1Q02792 1006 aaKnown RBP5.05□□□□□ -1.6
SSL1YLR005W GIS4Q04233 774 aa5.05□□□□□ -1.6
SSL1YLR005W DIB1Q06819 143 aaPredicted RBP5.05□□□□□ -1.6
SSL1YLR005W SUB2Q07478 446 aaKnown RBP5.05□□□□□ -1.6
SSL1YLR005W SBP1P10080 294 aaKnown RBP5.04□□□□□ -1.6
SSL1YLR005W HIM1Q06674 414 aa5.04□□□□□ -1.6
SSL1YLR005W GAS5Q08193 484 aa5.04□□□□□ -1.6
SSL1YLR005W LPD1P09624 499 aaKnown RBP5.04□□□□□ -1.6
SSL1YLR005W BOI1P38041 980 aaKnown RBP5.04□□□□□ -1.6
SSL1YLR005W ISW1P38144 1129 aa5.04□□□□□ -1.6
SSL1YLR005W AMN1P38285 549 aaPredicted RBP5.04□□□□□ -1.6
SSL1YLR005W LSB6P42951 607 aa5.04□□□□□ -1.6
SSL1YLR005W SUT1P53032 299 aaKnown RBP5.04□□□□□ -1.6
SSL1YLR005W AOS1Q06624 347 aa5.04□□□□□ -1.6
SSL1YLR005W FIG2P25653 1609 aa5.03□□□□□ -1.6
SSL1YLR005W FAS2P19097 1887 aaKnown RBP5.03□□□□□ -1.6
SSL1YLR005W PMD1P32634 1753 aa5.03□□□□□ -1.6
SSL1YLR005W SMY1P32364 656 aaKnown RBP5.03□□□□□ -1.6
SSL1YLR005W SHC1P39000 512 aa5.03□□□□□ -1.6
SSL1YLR005W YFR016CP43597 1233 aaKnown RBP5.03□□□□□ -1.6
SSL1YLR005W BUD9P53226 547 aa5.03□□□□□ -1.6
SSL1YLR005W ERO1Q03103 563 aa5.03□□□□□ -1.6
SSL1YLR005W IRC3Q06683 689 aa5.03□□□□□ -1.6
SSL1YLR005W RET1P22276 1149 aaKnown RBP5.02□□□□□ -1.61
SSL1YLR005W KCC4P25389 1037 aa5.02□□□□□ -1.61
SSL1YLR005W RRN6P32786 894 aa5.02□□□□□ -1.61
SSL1YLR005W AKL1P38080 1108 aaKnown RBP5.02□□□□□ -1.61
SSL1YLR005W RRM3P38766 723 aa5.02□□□□□ -1.61
SSL1YLR005W YIL165CP40446 119 aa5.02□□□□□ -1.61
SSL1YLR005W HXT8P40886 569 aa5.02□□□□□ -1.61
SSL1YLR005W BUD27P43573 796 aaKnown RBP RIP-Chip data5.02□□□□□ -1.61not detected
SSL1YLR005W SSP2Q08646 371 aa5.02□□□□□ -1.61
SSL1YLR005W CTI6Q08923 506 aa5.02□□□□□ -1.61
SSL1YLR005W GRX6Q12438 231 aa5.02□□□□□ -1.61
SSL1YLR005W POM152P39685 1337 aa5.01□□□□□ -1.61
SSL1YLR005W HKR1P41809 1802 aa5.01□□□□□ -1.61
SSL1YLR005W TOP1P04786 769 aa5.01□□□□□ -1.61
SSL1YLR005W THS1P04801 734 aaKnown RBP5.01□□□□□ -1.61
SSL1YLR005W SER1P33330 395 aaKnown RBP5.01□□□□□ -1.61
SSL1YLR005W FIR1P40020 876 aa5.01□□□□□ -1.61
SSL1YLR005W EMG1Q06287 252 aaKnown RBP5.01□□□□□ -1.61
SSL1YLR005W BDF2Q07442 638 aa5.01□□□□□ -1.61
SSL1YLR005W YLR278CQ05854 1341 aa5.01□□□□□ -1.61
SSL1YLR005W RPB10P22139 70 aa5□□□□□ -1.61
SSL1YLR005W KTR2P33550 425 aa5□□□□□ -1.61
SSL1YLR005W ETP1P38748 585 aaKnown RBP5□□□□□ -1.61
SSL1YLR005W PPT1P53043 513 aa5□□□□□ -1.61
SSL1YLR005W SOK2P53438 785 aaPredicted RBP5□□□□□ -1.61
SSL1YLR005W PAP2P53632 584 aaKnown RBP5□□□□□ -1.61
SSL1YLR005W PDS5Q04264 1277 aa5□□□□□ -1.61
SSL1YLR005W FUR4P05316 633 aaKnown RBP4.99□□□□□ -1.61
SSL1YLR005W YKU70P32807 602 aa4.99□□□□□ -1.61
SSL1YLR005W BOL3P39724 118 aa4.99□□□□□ -1.61
SSL1YLR005W TED1P40533 473 aa4.99□□□□□ -1.61
SSL1YLR005W RGD2P43556 714 aa4.99□□□□□ -1.61
SSL1YLR005W DUS1P53759 423 aaKnown RBP4.99□□□□□ -1.61
SSL1YLR005W YPL034WQ03083 165 aa4.99□□□□□ -1.61
SSL1YLR005W SSK22P25390 1331 aaPredicted RBP4.99□□□□□ -1.61
SSL1YLR005W LYS2P07702 1392 aa4.99□□□□□ -1.61
SSL1YLR005W ICL1P28240 557 aaPredicted RBP4.98□□□□□ -1.61
SSL1YLR005W AIM46P38885 310 aa4.98□□□□□ -1.61
SSL1YLR005W GIP2P40036 548 aa4.98□□□□□ -1.61
SSL1YLR005W RSC2Q06488 889 aa4.98□□□□□ -1.61
SSL1YLR005W ALE1Q08548 619 aa4.98□□□□□ -1.61
SSL1YLR005W GLT1Q12680 2145 aaKnown RBP4.98□□□□□ -1.61
SSL1YLR005W TIM50Q02776 476 aa4.97□□□□□ -1.61
SSL1YLR005W NSE3Q05541 303 aa4.97□□□□□ -1.61
SSL1YLR005W APC11Q12157 165 aa4.97□□□□□ -1.61
SSL1YLR005W LSO1Q3E827 93 aa4.97□□□□□ -1.61
SSL1YLR005W TY4B-PA0A0B7P3V8 1104 aa4.96□□□□□ -1.62
SSL1YLR005W MSM1P22438 575 aa4.96□□□□□ -1.62
SSL1YLR005W INP51P40559 946 aaKnown RBP4.96□□□□□ -1.62
SSL1YLR005W YGL082WP53155 381 aa4.96□□□□□ -1.62
SSL1YLR005W TY4A-HQ6Q5P6 413 aa4.96□□□□□ -1.62
SSL1YLR005W AI3P03877 415 aa4.95□□□□□ -1.62
SSL1YLR005W SAC7P17121 654 aa4.95□□□□□ -1.62
SSL1YLR005W YBR287WP38355 427 aa4.95□□□□□ -1.62
SSL1YLR005W NRD1P53617 575 aaKnown RBP RIP-Chip data4.95□□□□□ -1.62not detected
SSL1YLR005W RPL34AP87262 121 aaPredicted RBP4.95□□□□□ -1.62
SSL1YLR005W TIF6Q12522 245 aaKnown RBP4.95□□□□□ -1.62
SSL1YLR005W RAD55P38953 406 aa4.94□□□□□ -1.62
Retrieved 100 of 5,963 RNA–protein pairs in 70.2 ms