RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W INO1P11986 533 aa7.43□□□□□ -1.22
PRP40YKL012W DIT1P21623 536 aa7.43□□□□□ -1.22
PRP40YKL012W GLY1P37303 387 aaKnown RBP7.43□□□□□ -1.22
PRP40YKL012W TIF35Q04067 274 aaKnown RBP7.43□□□□□ -1.22
PRP40YKL012W UBX5Q06682 500 aa7.43□□□□□ -1.22
PRP40YKL012W MRP10O75012 95 aa7.43□□□□□ -1.22
PRP40YKL012W ARE1P25628 610 aa7.43□□□□□ -1.22
PRP40YKL012W DED1P06634 604 aaKnown RBP7.42□□□□□ -1.22
PRP40YKL012W SSB1P11484 613 aaKnown RBP7.42□□□□□ -1.22
PRP40YKL012W SYP1P25623 870 aaKnown RBP7.42□□□□□ -1.22
PRP40YKL012W PIN4P34217 668 aaKnown RBP RIP-Chip data7.42□□□□□ -1.22not detected
PRP40YKL012W MOT2P34909 587 aaKnown RBP7.42□□□□□ -1.22
PRP40YKL012W SSB2P40150 613 aaKnown RBP7.42□□□□□ -1.22
PRP40YKL012W PRK1P40494 810 aa7.42□□□□□ -1.22
PRP40YKL012W HUL4P40985 892 aa7.42□□□□□ -1.22
PRP40YKL012W GUP1P53154 560 aa7.42□□□□□ -1.22
PRP40YKL012W UTP22P53254 1237 aaPredicted RBP7.42□□□□□ -1.22
PRP40YKL012W TAF8Q03750 510 aa7.42□□□□□ -1.22
PRP40YKL012W UTP5Q04177 643 aaKnown RBP7.42□□□□□ -1.22
PRP40YKL012W YIG1Q08956 461 aa7.42□□□□□ -1.22
PRP40YKL012W TY1A-BLQ12266 440 aa7.42□□□□□ -1.22
PRP40YKL012W RKM4Q12504 494 aa7.42□□□□□ -1.22
PRP40YKL012W ADD66P36040 267 aa7.41□□□□□ -1.22
PRP40YKL012W NEM1P38757 446 aa7.41□□□□□ -1.22
PRP40YKL012W PRP9P19736 530 aaKnown RBP7.41□□□□□ -1.22
PRP40YKL012W FPS1P23900 669 aa7.41□□□□□ -1.22
PRP40YKL012W SNF7P39929 240 aaKnown RBP7.41□□□□□ -1.22
PRP40YKL012W MTR4P47047 1073 aaKnown RBP7.41□□□□□ -1.22
PRP40YKL012W SCW11P53189 542 aa7.41□□□□□ -1.22
PRP40YKL012W HAS1Q03532 505 aaKnown RBP7.41□□□□□ -1.22
PRP40YKL012W NOP14Q99207 810 aaKnown RBP7.41□□□□□ -1.22
PRP40YKL012W SLS1P42900 643 aa7.4□□□□□ -1.23
PRP40YKL012W CNN1P43618 361 aa7.4□□□□□ -1.23
PRP40YKL012W ATG36P46983 293 aa7.4□□□□□ -1.23
PRP40YKL012W RAT1Q02792 1006 aaKnown RBP7.4□□□□□ -1.23
PRP40YKL012W YMR265CQ03508 461 aaKnown RBP7.4□□□□□ -1.23
PRP40YKL012W DBP5P20449 482 aaKnown RBP7.39□□□□□ -1.23
PRP40YKL012W YKL107WP34251 309 aa7.39□□□□□ -1.23
PRP40YKL012W ARL1P38116 183 aaKnown RBP7.39□□□□□ -1.23
PRP40YKL012W TY1A-DR2Q03964 440 aaKnown RBP7.39□□□□□ -1.23
PRP40YKL012W YPL066WQ12194 479 aa7.39□□□□□ -1.23
PRP40YKL012W MSH2P25847 964 aa7.38□□□□□ -1.23
PRP40YKL012W UBP12P39538 1254 aa7.38□□□□□ -1.23
PRP40YKL012W NEO1P40527 1151 aa7.38□□□□□ -1.23
PRP40YKL012W LEM3P42838 414 aa7.38□□□□□ -1.23
PRP40YKL012W ALR2P43553 858 aa7.38□□□□□ -1.23
PRP40YKL012W YGL176CP46945 554 aa7.38□□□□□ -1.23
PRP40YKL012W YJR008WP47085 338 aa7.38□□□□□ -1.23
PRP40YKL012W RTA1P53047 317 aa7.38□□□□□ -1.23
PRP40YKL012W CUZ1P53899 274 aa7.38□□□□□ -1.23
PRP40YKL012W DNM1P54861 757 aa7.38□□□□□ -1.23
PRP40YKL012W RKM2Q03942 479 aa7.38□□□□□ -1.23
PRP40YKL012W SRM1P21827 482 aa7.38□□□□□ -1.23
PRP40YKL012W PUF4P25339 888 aaKnown RBP RIP-Chip data7.38□□□□□ -1.23not detected
PRP40YKL012W AOS1Q06624 347 aa7.38□□□□□ -1.23
PRP40YKL012W YDR461C-AQ2V2P7 80 aa7.38□□□□□ -1.23
PRP40YKL012W TRK1P12685 1235 aa7.37□□□□□ -1.23
PRP40YKL012W MBP1P39678 833 aa7.37□□□□□ -1.23
PRP40YKL012W TOP1P04786 769 aa7.36□□□□□ -1.23
PRP40YKL012W AFG2P32794 780 aa7.36□□□□□ -1.23
PRP40YKL012W BET3P36149 193 aa7.36□□□□□ -1.23
PRP40YKL012W CRP1P38845 465 aaKnown RBP7.36□□□□□ -1.23
PRP40YKL012W MPH1P40562 993 aa7.36□□□□□ -1.23
PRP40YKL012W ADE12P80210 433 aaKnown RBP7.36□□□□□ -1.23
PRP40YKL012W GCR2Q01722 534 aa7.36□□□□□ -1.23
PRP40YKL012W MEC3Q02574 474 aa7.36□□□□□ -1.23
PRP40YKL012W TY1A-MR1Q04215 440 aa7.36□□□□□ -1.23
PRP40YKL012W YDL124WQ07551 312 aaKnown RBP7.36□□□□□ -1.23
PRP40YKL012W NTG2Q08214 380 aa7.36□□□□□ -1.23
PRP40YKL012W MCM7P38132 845 aa7.35□□□□□ -1.23
PRP40YKL012W ATG14P38270 344 aa7.35□□□□□ -1.23
PRP40YKL012W BRE2P43132 505 aa7.35□□□□□ -1.23
PRP40YKL012W ROG3P43602 733 aa7.35□□□□□ -1.23
PRP40YKL012W RTS3P53289 263 aa7.35□□□□□ -1.23
PRP40YKL012W GCV1P48015 400 aa7.34□□□□□ -1.23
PRP40YKL012W HNT2P49775 206 aa7.34□□□□□ -1.23
PRP40YKL012W LYS5P50113 272 aa7.34□□□□□ -1.23
PRP40YKL012W UGO1Q03327 502 aa7.33□□□□□ -1.24
PRP40YKL012W RPL8AP17076 256 aaKnown RBP7.33□□□□□ -1.24
PRP40YKL012W ALG3P38179 458 aa7.33□□□□□ -1.24
PRP40YKL012W YEN1P40028 759 aa7.33□□□□□ -1.24
PRP40YKL012W HSV2P50079 448 aaPredicted RBP7.33□□□□□ -1.24
PRP40YKL012W SOK2P53438 785 aaPredicted RBP7.33□□□□□ -1.24
PRP40YKL012W NPL3Q01560 414 aaKnown RBP RIP-Chip data7.33□□□□□ -1.24not detected
PRP40YKL012W SPO71Q03868 1245 aa7.33□□□□□ -1.24
PRP40YKL012W ADR1P07248 1323 aa7.32□□□□□ -1.24
PRP40YKL012W RGD1P38339 666 aa7.32□□□□□ -1.24
PRP40YKL012W ZDS1P50111 915 aaKnown RBP7.32□□□□□ -1.24
PRP40YKL012W YNR029CP53729 429 aaKnown RBP7.32□□□□□ -1.24
PRP40YKL012W SYT1Q06836 1226 aa7.32□□□□□ -1.24
PRP40YKL012W HBS1P32769 611 aaKnown RBP7.31□□□□□ -1.24
PRP40YKL012W SIP5P40210 489 aaKnown RBP7.31□□□□□ -1.24
PRP40YKL012W MAL11P53048 616 aa7.31□□□□□ -1.24
PRP40YKL012W YNR063WP53749 607 aa7.31□□□□□ -1.24
PRP40YKL012W HBN1Q96VH4 193 aa7.31□□□□□ -1.24
PRP40YKL012W MLS1P30952 554 aa7.31□□□□□ -1.24
PRP40YKL012W SFP1P32432 683 aa7.31□□□□□ -1.24
PRP40YKL012W REI1P38344 393 aaPredicted RBP7.31□□□□□ -1.24
PRP40YKL012W CCC2P38995 1004 aa7.31□□□□□ -1.24
PRP40YKL012W GDH3P39708 457 aa7.31□□□□□ -1.24
Retrieved 100 of 5,963 RNA–protein pairs in 41.9 ms