RNA–Protein interactions for RNA: YDR288W

NSE3, Transcript of Component of the SMC5-SMC6 complex, yeast

Gene NSE3, Length 912 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSE3	YDR288W	RER2	P35196	286 aa		6.72	□□□□□ -1.33
NSE3	YDR288W	MCX1	P38323	520 aa	Predicted RBP	6.72	□□□□□ -1.33
NSE3	YDR288W	BUD9	P53226	547 aa		6.72	□□□□□ -1.33
NSE3	YDR288W	YGR045C	P53229	120 aa		6.72	□□□□□ -1.33
NSE3	YDR288W	TY1A-NL1	Q12391	440 aa	Known RBP	6.72	□□□□□ -1.33
NSE3	YDR288W	SYP1	P25623	870 aa	Known RBP	6.71	□□□□□ -1.34
NSE3	YDR288W	MKK2	P32491	506 aa		6.71	□□□□□ -1.34
NSE3	YDR288W	YMR187C	Q03236	431 aa		6.71	□□□□□ -1.34
NSE3	YDR288W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	6.71	□□□□□ -1.34	not detected
NSE3	YDR288W	OPI10	Q08202	246 aa		6.71	□□□□□ -1.34
NSE3	YDR288W	SSF2	Q12153	453 aa	Predicted RBP	6.71	□□□□□ -1.34
NSE3	YDR288W	TRP2	P00899	507 aa	Known RBP	6.7	□□□□□ -1.34
NSE3	YDR288W	LYP1	P32487	611 aa		6.7	□□□□□ -1.34
NSE3	YDR288W	HXT13	P39924	564 aa		6.7	□□□□□ -1.34
NSE3	YDR288W	YFL066C	P43538	392 aa		6.7	□□□□□ -1.34
NSE3	YDR288W	HXT17	P53631	564 aa		6.7	□□□□□ -1.34
NSE3	YDR288W	HXT15	P54854	567 aa		6.7	□□□□□ -1.34
NSE3	YDR288W	RAT1	Q02792	1006 aa	Known RBP	6.7	□□□□□ -1.34
NSE3	YDR288W	EEB1	Q02891	456 aa		6.7	□□□□□ -1.34
NSE3	YDR288W	TDA5	Q06417	326 aa	Known RBP	6.7	□□□□□ -1.34
NSE3	YDR288W	PTC5	Q12511	572 aa		6.7	□□□□□ -1.34
NSE3	YDR288W	GPT2	P36148	743 aa		6.69	□□□□□ -1.34
NSE3	YDR288W	PRY1	P47032	299 aa		6.69	□□□□□ -1.34
NSE3	YDR288W	VPS53	P47061	822 aa		6.69	□□□□□ -1.34
NSE3	YDR288W	NCE103	P53615	221 aa		6.69	□□□□□ -1.34
NSE3	YDR288W	AIM44	Q99299	758 aa		6.69	□□□□□ -1.34
NSE3	YDR288W	AI3	P03877	415 aa		6.68	□□□□□ -1.34
NSE3	YDR288W	GRX1	P25373	110 aa	Known RBP	6.68	□□□□□ -1.34
NSE3	YDR288W	NFS1	P25374	497 aa		6.68	□□□□□ -1.34
NSE3	YDR288W	NNK1	P36003	928 aa		6.68	□□□□□ -1.34
NSE3	YDR288W	TAT1	P38085	619 aa		6.68	□□□□□ -1.34
NSE3	YDR288W	MCM7	P38132	845 aa		6.68	□□□□□ -1.34
NSE3	YDR288W	CNN1	P43618	361 aa		6.68	□□□□□ -1.34
NSE3	YDR288W	YJL049W	P47048	450 aa		6.68	□□□□□ -1.34
NSE3	YDR288W	PHM7	Q12252	991 aa		6.68	□□□□□ -1.34
NSE3	YDR288W	ALG3	P38179	458 aa		6.67	□□□□□ -1.34
NSE3	YDR288W	OCA5	P38738	679 aa		6.67	□□□□□ -1.34
NSE3	YDR288W	SNF7	P39929	240 aa	Known RBP	6.67	□□□□□ -1.34
NSE3	YDR288W	YOL098C	Q12496	1037 aa		6.67	□□□□□ -1.34
NSE3	YDR288W	YPR053C	Q6Q5F3	151 aa		6.67	□□□□□ -1.34
NSE3	YDR288W	INO1	P11986	533 aa		6.66	□□□□□ -1.34
NSE3	YDR288W	DBP5	P20449	482 aa	Known RBP	6.66	□□□□□ -1.34
NSE3	YDR288W	RET1	P22276	1149 aa	Known RBP	6.66	□□□□□ -1.34
NSE3	YDR288W	SRP40	P32583	406 aa	Predicted RBP	6.66	□□□□□ -1.34
NSE3	YDR288W	MOT2	P34909	587 aa	Known RBP	6.66	□□□□□ -1.34
NSE3	YDR288W	TIF35	Q04067	274 aa	Known RBP	6.66	□□□□□ -1.34
NSE3	YDR288W	YLR225C	Q05948	407 aa	Known RBP	6.66	□□□□□ -1.34
NSE3	YDR288W	GIC2	Q06648	383 aa		6.66	□□□□□ -1.34
NSE3	YDR288W	ICP55	P40051	511 aa		6.65	□□□□□ -1.34
NSE3	YDR288W	MSH4	P40965	878 aa	Predicted RBP	6.65	□□□□□ -1.34
NSE3	YDR288W	YDR215C	Q12240	137 aa		6.65	□□□□□ -1.34
NSE3	YDR288W	ABD1	P32783	436 aa	Predicted RBP	6.64	□□□□□ -1.35
NSE3	YDR288W	AFG2	P32794	780 aa		6.64	□□□□□ -1.35
NSE3	YDR288W	SMY2	P32909	740 aa	Known RBP	6.64	□□□□□ -1.35
NSE3	YDR288W	QNS1	P38795	714 aa	Known RBP	6.64	□□□□□ -1.35
NSE3	YDR288W	SLN1	P39928	1220 aa	Predicted RBP	6.64	□□□□□ -1.35
NSE3	YDR288W	HNT2	P49775	206 aa		6.64	□□□□□ -1.35
NSE3	YDR288W	ARI1	P53111	347 aa	Known RBP	6.64	□□□□□ -1.35
NSE3	YDR288W	NAN1	Q02931	896 aa	Known RBP	6.64	□□□□□ -1.35
NSE3	YDR288W	RSA3	Q05942	220 aa	Known RBP	6.64	□□□□□ -1.35
NSE3	YDR288W	YLR257W	Q06146	321 aa	Known RBP	6.64	□□□□□ -1.35
NSE3	YDR288W	AOS1	Q06624	347 aa		6.64	□□□□□ -1.35
NSE3	YDR288W	HRK1	Q08732	759 aa	Known RBP	6.64	□□□□□ -1.35
NSE3	YDR288W	YTA7	P40340	1379 aa		6.64	□□□□□ -1.35
NSE3	YDR288W	AGP1	P25376	633 aa		6.63	□□□□□ -1.35
NSE3	YDR288W	MLS1	P30952	554 aa		6.63	□□□□□ -1.35
NSE3	YDR288W	YKL107W	P34251	309 aa		6.63	□□□□□ -1.35
NSE3	YDR288W	YKL069W	P36088	180 aa		6.63	□□□□□ -1.35
NSE3	YDR288W	RGD1	P38339	666 aa		6.63	□□□□□ -1.35
NSE3	YDR288W	AKR1	P39010	764 aa		6.63	□□□□□ -1.35
NSE3	YDR288W	SPF1	P39986	1215 aa	Known RBP	6.63	□□□□□ -1.35
NSE3	YDR288W	PUS1	Q12211	544 aa	Known RBP	6.63	□□□□□ -1.35
NSE3	YDR288W	RKM4	Q12504	494 aa		6.63	□□□□□ -1.35
NSE3	YDR288W	RPS4A	P0CX35	261 aa	Known RBP	6.62	□□□□□ -1.35
NSE3	YDR288W	RPS4B	P0CX36	261 aa	Known RBP	6.62	□□□□□ -1.35
NSE3	YDR288W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	6.62	□□□□□ -1.35	not detected
NSE3	YDR288W	SBA1	P28707	216 aa	Known RBP	6.62	□□□□□ -1.35
NSE3	YDR288W	YGL176C	P46945	554 aa		6.62	□□□□□ -1.35
NSE3	YDR288W	TPP1	Q03796	238 aa		6.62	□□□□□ -1.35
NSE3	YDR288W	CDC53	Q12018	815 aa	Known RBP	6.62	□□□□□ -1.35
NSE3	YDR288W	YOR131C	Q12486	218 aa		6.62	□□□□□ -1.35
NSE3	YDR288W	RAD4	P14736	754 aa		6.61	□□□□□ -1.35
NSE3	YDR288W	YCK2	P23292	546 aa	Known RBP	6.61	□□□□□ -1.35
NSE3	YDR288W	COQ2	P32378	372 aa		6.61	□□□□□ -1.35
NSE3	YDR288W	YKL091C	P33324	310 aa	Known RBP	6.61	□□□□□ -1.35
NSE3	YDR288W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	6.61	□□□□□ -1.35	not detected
NSE3	YDR288W	NMD3	P38861	518 aa	Known RBP	6.61	□□□□□ -1.35
NSE3	YDR288W	TIM54	P47045	478 aa		6.61	□□□□□ -1.35
NSE3	YDR288W	ESC2	Q06340	456 aa		6.61	□□□□□ -1.35
NSE3	YDR288W	SPO75	Q07798	868 aa		6.61	□□□□□ -1.35
NSE3	YDR288W	YPL260W	Q08977	551 aa		6.61	□□□□□ -1.35
NSE3	YDR288W	SPO21	Q12411	609 aa		6.61	□□□□□ -1.35
NSE3	YDR288W	KIP1	P28742	1111 aa		6.6	□□□□□ -1.35
NSE3	YDR288W	NAM7	P30771	971 aa	Known RBP	6.6	□□□□□ -1.35
NSE3	YDR288W	MRP8	P35719	219 aa		6.6	□□□□□ -1.35
NSE3	YDR288W	VBA5	P36172	582 aa		6.6	□□□□□ -1.35
NSE3	YDR288W	SEA4	P38164	1038 aa		6.6	□□□□□ -1.35
NSE3	YDR288W	ORC1	P54784	914 aa	Predicted RBP	6.6	□□□□□ -1.35
NSE3	YDR288W	SHE9	Q04172	456 aa		6.6	□□□□□ -1.35
NSE3	YDR288W	STI1	P15705	589 aa	Known RBP RIP-Chip data	6.59	□□□□□ -1.35	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 23.7 ms