RNA–Protein interactions for RNA: YBR275C

RIF1, Transcript of Protein that binds to the Rap1p C-terminus, yeast

Gene RIF1, Length 5,751 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RIF1	YBR275C	MDM38	Q08179	573 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	CBP1	P07252	654 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	RSR1	P13856	272 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	SEC8	P32855	1065 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	SAP190	P36123	1033 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	SPC34	P36131	295 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	ALF1	P53904	254 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	TLG2	Q08144	397 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	PSK2	Q08217	1101 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	TRS33	Q99394	268 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	DAL1	P32375	460 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	MAP2	P38174	421 aa	Known RBP	3.16	□□□□□ -1.9
RIF1	YBR275C	PTI1	P39927	425 aa	Predicted RBP	3.16	□□□□□ -1.9
RIF1	YBR275C	PRY3	P47033	881 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	UTP8	P53276	713 aa	Known RBP	3.16	□□□□□ -1.9
RIF1	YBR275C	PDR16	P53860	351 aa	Known RBP	3.16	□□□□□ -1.9
RIF1	YBR275C	RRB1	Q04225	511 aa	Known RBP	3.16	□□□□□ -1.9
RIF1	YBR275C	YSH1	Q06224	779 aa	Predicted RBP	3.16	□□□□□ -1.9
RIF1	YBR275C	SRN2	Q99176	213 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	BUD31	P25337	157 aa	Predicted RBP	3.16	□□□□□ -1.9
RIF1	YBR275C	RPC53	P25441	422 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	CWH43	P25618	953 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	GEF1	P37020	779 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	RRP3	P38712	501 aa	Known RBP	3.16	□□□□□ -1.9
RIF1	YBR275C	LEM3	P42838	414 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	YJL107C	P42947	387 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	POB3	Q04636	552 aa	Known RBP	3.16	□□□□□ -1.9
RIF1	YBR275C	AHC1	Q12433	566 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	YOS9	Q99220	542 aa		3.16	□□□□□ -1.9
RIF1	YBR275C	HVG1	P0CE11	249 aa		3.15	□□□□□ -1.9
RIF1	YBR275C	VMA2	P16140	517 aa	Known RBP	3.15	□□□□□ -1.9
RIF1	YBR275C	PUP3	P25451	205 aa	Known RBP	3.15	□□□□□ -1.9
RIF1	YBR275C	VAC17	P25591	423 aa		3.15	□□□□□ -1.9
RIF1	YBR275C	DEP1	P31385	405 aa		3.15	□□□□□ -1.9
RIF1	YBR275C	EFB1	P32471	206 aa	Known RBP	3.15	□□□□□ -1.9
RIF1	YBR275C	HES1	P35843	434 aa		3.15	□□□□□ -1.9
RIF1	YBR275C	DAN4	P47179	1161 aa		3.15	□□□□□ -1.9
RIF1	YBR275C	SUR7	P54003	302 aa		3.15	□□□□□ -1.9
RIF1	YBR275C	RPN9	Q04062	393 aa	Known RBP	3.15	□□□□□ -1.9
RIF1	YBR275C	SMD2	Q06217	110 aa	Known RBP	3.15	□□□□□ -1.9
RIF1	YBR275C	RAD61	Q99359	647 aa		3.15	□□□□□ -1.9
RIF1	YBR275C	FMP30	Q02883	468 aa		3.15	□□□□□ -1.9
RIF1	YBR275C	RPP2A	P05319	106 aa	Known RBP	3.15	□□□□□ -1.91
RIF1	YBR275C	MST1	P07236	462 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
RIF1	YBR275C	SLA2	P33338	968 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	GCV1	P48015	400 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	CUE3	P53137	624 aa	Known RBP	3.15	□□□□□ -1.91
RIF1	YBR275C	ARP9	Q05123	467 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	HMI1	Q12039	706 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	LAT1	P12695	482 aa	Known RBP	3.15	□□□□□ -1.91
RIF1	YBR275C	MSH1	P25846	959 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	CDC11	P32458	415 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	MIP6	P38760	659 aa	Known RBP	3.15	□□□□□ -1.91
RIF1	YBR275C	RGA1	P39083	1007 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	HMF1	P40037	129 aa	Known RBP	3.15	□□□□□ -1.91
RIF1	YBR275C	YJR061W	P40355	935 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	SEC27	P41811	889 aa	Known RBP	3.15	□□□□□ -1.91
RIF1	YBR275C	SHE9	Q04172	456 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	GIS4	Q04233	774 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	SMC4	Q12267	1418 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	MRPL25	P23369	157 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	GGA2	P38817	585 aa	Known RBP	3.15	□□□□□ -1.91
RIF1	YBR275C	XKS1	P42826	600 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	EFM3	P47163	339 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	BNI5	P53890	448 aa	Known RBP	3.15	□□□□□ -1.91
RIF1	YBR275C	NDL1	Q06568	189 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	OPY2	Q06810	360 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	MED2	Q12124	431 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	SLP1	Q12232	587 aa		3.15	□□□□□ -1.91
RIF1	YBR275C	GSY1	P23337	708 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	MEI5	P32489	222 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	GIC1	P38785	314 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	RSC8	P43609	557 aa	Known RBP	3.14	□□□□□ -1.91
RIF1	YBR275C	BRO1	P48582	844 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	YNL134C	P53912	376 aa	Known RBP	3.14	□□□□□ -1.91
RIF1	YBR275C	TSA2	Q04120	196 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	RRG8	Q06109	277 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	HFI1	Q12060	488 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	LCB4	Q12246	624 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	RPS6A	P0CX37	236 aa	Known RBP	3.14	□□□□□ -1.91
RIF1	YBR275C	RPS6B	P0CX38	236 aa	Predicted RBP	3.14	□□□□□ -1.91
RIF1	YBR275C	SMI1	P32566	505 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	RRM3	P38766	723 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	NHP10	Q03435	203 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	YET2	Q04210	160 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	SGO1	Q08490	590 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	RTK1	Q12100	620 aa	Predicted RBP	3.14	□□□□□ -1.91
RIF1	YBR275C	LEU2	P04173	364 aa	Predicted RBP	3.14	□□□□□ -1.91
RIF1	YBR275C	BIK1	P11709	440 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	PTP1	P25044	335 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	HXT4	P32467	576 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	PTP3	P40048	928 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	RTR1	P40084	226 aa	Predicted RBP	3.14	□□□□□ -1.91
RIF1	YBR275C	LOC1	P43586	204 aa	Predicted RBP	3.14	□□□□□ -1.91
RIF1	YBR275C	SAE2	P46946	345 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	FPK1	P53739	893 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	NPC2	Q12408	173 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	SPO24	Q3E752	67 aa		3.14	□□□□□ -1.91
RIF1	YBR275C	REB1	P21538	810 aa		3.14	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 20.6 ms