RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 ATG9Q12142 997 aa9.67□□□□□ -0.86
LSR1LSR1 STI1P15705 589 aaKnown RBP RIP-Chip data9.66□□□□□ -0.86not detected
LSR1LSR1 DPB3P27344 201 aa9.66□□□□□ -0.86
LSR1LSR1 ERG7P38604 731 aa9.66□□□□□ -0.86
LSR1LSR1 YGR153WP48238 217 aa9.66□□□□□ -0.86
LSR1LSR1 PIP2P52960 996 aa9.66□□□□□ -0.86
LSR1LSR1 RPT6Q01939 405 aaKnown RBP9.66□□□□□ -0.86
LSR1LSR1 EBS1Q03466 884 aaKnown RBP9.66□□□□□ -0.86
LSR1LSR1 GIS4Q04233 774 aa9.66□□□□□ -0.86
LSR1LSR1 YMR074CQ04773 145 aa9.66□□□□□ -0.86
LSR1LSR1 SML1Q04964 104 aa9.66□□□□□ -0.86
LSR1LSR1 PSF3Q12146 194 aa9.66□□□□□ -0.86
LSR1LSR1 TIP41Q12199 356 aa9.66□□□□□ -0.86
LSR1LSR1 YKL068W-AQ3E826 78 aa9.66□□□□□ -0.86
LSR1LSR1 GSC2P40989 1895 aa9.66□□□□□ -0.86
LSR1LSR1 CDC37P06101 506 aaKnown RBP9.65□□□□□ -0.86
LSR1LSR1 SRP54P20424 541 aaKnown RBP9.65□□□□□ -0.86
LSR1LSR1 SIT4P20604 311 aa9.65□□□□□ -0.86
LSR1LSR1 MIP6P38760 659 aaKnown RBP9.65□□□□□ -0.86
LSR1LSR1 RIX1P38883 763 aaPredicted RBP9.65□□□□□ -0.86
LSR1LSR1 CAJ1P39101 391 aa9.65□□□□□ -0.86
LSR1LSR1 HFM1P51979 1187 aa9.65□□□□□ -0.86
LSR1LSR1 MAL13P53338 473 aa9.65□□□□□ -0.86
LSR1LSR1 ERG5P54781 538 aa9.65□□□□□ -0.86
LSR1LSR1 UTP13Q05946 817 aaKnown RBP9.65□□□□□ -0.86
LSR1LSR1 YPL260WQ08977 551 aa9.65□□□□□ -0.86
LSR1LSR1 WRS1Q12109 432 aaKnown RBP9.65□□□□□ -0.86
LSR1LSR1 MSH1P25846 959 aa9.64□□□□□ -0.87
LSR1LSR1 EFM2P38347 419 aa9.64□□□□□ -0.87
LSR1LSR1 STT3P39007 718 aaKnown RBP9.64□□□□□ -0.87
LSR1LSR1 ATG3P40344 310 aa9.64□□□□□ -0.87
LSR1LSR1 RAD26P40352 1085 aa9.64□□□□□ -0.87
LSR1LSR1 MVP1P40959 511 aaKnown RBP9.64□□□□□ -0.87
LSR1LSR1 THI6P41835 540 aa9.64□□□□□ -0.87
LSR1LSR1 SCY1P53009 804 aa9.64□□□□□ -0.87
LSR1LSR1 RTC4P53850 401 aa9.64□□□□□ -0.87
LSR1LSR1 SAS4Q04003 481 aa9.64□□□□□ -0.87
LSR1LSR1 RRB1Q04225 511 aaKnown RBP9.64□□□□□ -0.87
LSR1LSR1 SPP382Q06411 708 aaPredicted RBP9.64□□□□□ -0.87
LSR1LSR1 YOL098CQ12496 1037 aa9.64□□□□□ -0.87
LSR1LSR1 CIT1P00890 479 aa9.63□□□□□ -0.87
LSR1LSR1 PSO2P30620 661 aa9.63□□□□□ -0.87
LSR1LSR1 BCH2P36122 765 aa9.63□□□□□ -0.87
LSR1LSR1 SPT8P38915 602 aa9.63□□□□□ -0.87
LSR1LSR1 EFM4P40516 257 aa9.63□□□□□ -0.87
LSR1LSR1 SET4P42948 560 aa9.63□□□□□ -0.87
LSR1LSR1 JJJ2P46997 583 aa9.63□□□□□ -0.87
LSR1LSR1 RNT1Q02555 471 aa9.63□□□□□ -0.87
LSR1LSR1 UBX2Q04228 584 aa9.63□□□□□ -0.87
LSR1LSR1 YOL075CQ08234 1294 aa9.63□□□□□ -0.87
LSR1LSR1 MAK11P20484 414 aaKnown RBP9.62□□□□□ -0.87
LSR1LSR1 RRP1P35178 278 aaPredicted RBP9.62□□□□□ -0.87
LSR1LSR1 MCX1P38323 520 aaPredicted RBP9.62□□□□□ -0.87
LSR1LSR1 REI1P38344 393 aaPredicted RBP9.62□□□□□ -0.87
LSR1LSR1 TOM71P38825 639 aaKnown RBP9.62□□□□□ -0.87
LSR1LSR1 BUD16P39988 312 aa9.62□□□□□ -0.87
LSR1LSR1 NDC80P40460 691 aa9.62□□□□□ -0.87
LSR1LSR1 SHQ1P40486 507 aaPredicted RBP9.62□□□□□ -0.87
LSR1LSR1 FYV8P46949 817 aaKnown RBP9.62□□□□□ -0.87
LSR1LSR1 RET3P53600 189 aa9.62□□□□□ -0.87
LSR1LSR1 PRP42Q03776 544 aaKnown RBP9.62□□□□□ -0.87
LSR1LSR1 IRC3Q06683 689 aa9.62□□□□□ -0.87
LSR1LSR1 DSE3Q08729 430 aa9.62□□□□□ -0.87
LSR1LSR1 NEW1Q08972 1196 aaKnown RBP9.62□□□□□ -0.87
LSR1LSR1 GIN4Q12263 1142 aa9.62□□□□□ -0.87
LSR1LSR1 THR4P16120 514 aaKnown RBP9.61□□□□□ -0.87
LSR1LSR1 SPO12P17123 173 aa9.61□□□□□ -0.87
LSR1LSR1 YEL043WP32618 956 aa9.61□□□□□ -0.87
LSR1LSR1 PFF1P38244 976 aa9.61□□□□□ -0.87
LSR1LSR1 VFA1P40080 203 aa9.61□□□□□ -0.87
LSR1LSR1 UBA2P52488 636 aa9.61□□□□□ -0.87
LSR1LSR1 HPC2Q01448 625 aa9.61□□□□□ -0.87
LSR1LSR1 TRS120Q04183 1289 aa9.61□□□□□ -0.87
LSR1LSR1 RBA50Q04418 439 aa9.61□□□□□ -0.87
LSR1LSR1 VAC14Q06708 880 aa9.61□□□□□ -0.87
LSR1LSR1 TLG2Q08144 397 aa9.61□□□□□ -0.87
LSR1LSR1 RRP6Q12149 733 aaKnown RBP9.61□□□□□ -0.87
LSR1LSR1 FOB1O13329 566 aa9.6□□□□□ -0.87
LSR1LSR1 UBP1P25037 809 aa9.6□□□□□ -0.87
LSR1LSR1 RAD57P25301 460 aa9.6□□□□□ -0.87
LSR1LSR1 BUD31P25337 157 aaPredicted RBP9.6□□□□□ -0.87
LSR1LSR1 CCT4P39078 528 aaKnown RBP9.6□□□□□ -0.87
LSR1LSR1 APL6P46682 809 aa9.6□□□□□ -0.87
LSR1LSR1 YAP7Q08182 245 aa9.6□□□□□ -0.87
LSR1LSR1 ARG82P07250 355 aa9.59□□□□□ -0.87
LSR1LSR1 MTF2P10849 440 aa9.59□□□□□ -0.87
LSR1LSR1 RPO26P20435 155 aa9.59□□□□□ -0.87
LSR1LSR1 SPB4P25808 606 aaPredicted RBP9.59□□□□□ -0.87
LSR1LSR1 RPL8BP29453 256 aaKnown RBP9.59□□□□□ -0.87
LSR1LSR1 DEP1P31385 405 aa9.59□□□□□ -0.87
LSR1LSR1 RPC25P35718 212 aa9.59□□□□□ -0.87
LSR1LSR1 CCT3P39077 534 aaKnown RBP9.59□□□□□ -0.87
LSR1LSR1 VPS8P39702 1274 aa9.59□□□□□ -0.87
LSR1LSR1 TIF4632P39936 914 aaKnown RBP9.59□□□□□ -0.87
LSR1LSR1 VTC2P43585 828 aa9.59□□□□□ -0.87
LSR1LSR1 MDM1Q01846 1127 aa9.59□□□□□ -0.87
LSR1LSR1 MRS2Q01926 470 aa9.59□□□□□ -0.87
LSR1LSR1 UME1Q03010 460 aa9.59□□□□□ -0.87
LSR1LSR1 ERO1Q03103 563 aa9.59□□□□□ -0.87
LSR1LSR1 GYL1Q04322 720 aa9.59□□□□□ -0.87
Retrieved 100 of 5,963 RNA–protein pairs in 101.2 ms