RNA–Protein interactions for RNA: ENST00000641811.1

PHGDH-227, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 1,031 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-227ENST00000641811 NPC1L1Q9UHC9 1359 aa23.55■■□□□ 1.36
PHGDH-227ENST00000641811 KCNQ2O43526 872 aa23.55■■□□□ 1.36
PHGDH-227ENST00000641811 BCL11BQ9C0K0 894 aaPredicted RBP23.55■■□□□ 1.36
PHGDH-227ENST00000641811 NCAPD2Q15021 1401 aa23.54■■□□□ 1.36
PHGDH-227ENST00000641811 MTHFSP49914 203 aa23.53■■□□□ 1.36
PHGDH-227ENST00000641811 SHANK3Q9BYB0 1731 aa23.52■■□□□ 1.36
PHGDH-227ENST00000641811 ZEB1P37275 1124 aaPredicted RBP23.5■■□□□ 1.35
PHGDH-227ENST00000641811 IGSF1Q8N6C5 1336 aa23.49■■□□□ 1.35
PHGDH-227ENST00000641811 IL13P35225 146 aa23.47■■□□□ 1.35
PHGDH-227ENST00000641811 NHSQ6T4R5 1651 aa23.47■■□□□ 1.35
PHGDH-227ENST00000641811 PLSCR1O15162 318 aa23.46■■□□□ 1.35
PHGDH-227ENST00000641811 CYP27B1O15528 508 aa23.46■■□□□ 1.35
PHGDH-227ENST00000641811 PARD3Q8TEW0 1356 aa23.46■■□□□ 1.35
PHGDH-227ENST00000641811 PCDH11XQ9BZA7 1347 aa23.45■■□□□ 1.34
PHGDH-227ENST00000641811 PCDH11YQ9BZA8 1340 aa23.45■■□□□ 1.34
PHGDH-227ENST00000641811 AEBP1Q8IUX7 1158 aa23.45■■□□□ 1.34
PHGDH-227ENST00000641811 PRIM1P49642 420 aaKnown RBP23.44■■□□□ 1.34
PHGDH-227ENST00000641811 KAT6BQ8WYB5 2073 aa23.44■■□□□ 1.34
PHGDH-227ENST00000641811 PKD1L3Q7Z443 1732 aa23.43■■□□□ 1.34
PHGDH-227ENST00000641811 SYTL4Q96C24 671 aaPredicted RBP23.43■■□□□ 1.34
PHGDH-227ENST00000641811 SPG7Q9UQ90 795 aa23.43■■□□□ 1.34
PHGDH-227ENST00000641811 RREB1Q92766 1687 aa23.42■■□□□ 1.34
PHGDH-227ENST00000641811 PSDA5PKW4 1024 aaPredicted RBP23.42■■□□□ 1.34
PHGDH-227ENST00000641811 DDX10Q13206 875 aaKnown RBP23.42■■□□□ 1.34
PHGDH-227ENST00000641811 PROM2Q8N271 834 aa23.42■■□□□ 1.34
PHGDH-227ENST00000641811 DOT1LQ8TEK3 1739 aa23.42■■□□□ 1.34
PHGDH-227ENST00000641811 SULT6B1Q6IMI4 303 aa23.41■■□□□ 1.34
PHGDH-227ENST00000641811 NUP188Q5SRE5 1749 aa23.4■■□□□ 1.34
PHGDH-227ENST00000641811 DIAPH1O60610 1272 aaKnown RBP23.4■■□□□ 1.34
PHGDH-227ENST00000641811 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.4■■□□□ 1.34
PHGDH-227ENST00000641811 BTAF1O14981 1849 aa23.4■■□□□ 1.34
PHGDH-227ENST00000641811 R3HDM1Q15032 1099 aaKnown RBP23.39■■□□□ 1.33
PHGDH-227ENST00000641811 RGPD3A6NKT7 1758 aaPredicted RBP23.38■■□□□ 1.33
PHGDH-227ENST00000641811 RGPD4Q7Z3J3 1758 aa23.38■■□□□ 1.33
PHGDH-227ENST00000641811 PPP2R1AP30153 589 aa23.38■■□□□ 1.33
PHGDH-227ENST00000641811 TXNRD1Q16881 649 aa23.38■■□□□ 1.33
PHGDH-227ENST00000641811 COL3A1P02461 1466 aaPredicted RBP23.37■■□□□ 1.33
PHGDH-227ENST00000641811 HMOX1P09601 288 aa23.36■■□□□ 1.33
PHGDH-227ENST00000641811 PHKG2P15735 406 aa23.36■■□□□ 1.33
PHGDH-227ENST00000641811 KDRP35968 1356 aa23.36■■□□□ 1.33
PHGDH-227ENST00000641811 NKX1-1Q15270 411 aaPredicted RBP23.35■■□□□ 1.33
PHGDH-227ENST00000641811 PLEKHO1Q53GL0 409 aaPredicted RBP23.35■■□□□ 1.33
PHGDH-227ENST00000641811 IFNL2Q8IZJ0 200 aa23.34■■□□□ 1.33
PHGDH-227ENST00000641811 TOGARAM1Q9Y4F4 1720 aa23.33■■□□□ 1.33
PHGDH-227ENST00000641811 NBPF14Q5TI25 921 aa23.33■■□□□ 1.33
PHGDH-227ENST00000641811 ANO8Q9HCE9 1232 aaPredicted RBP23.33■■□□□ 1.33
PHGDH-227ENST00000641811 PLEKHG2Q9H7P9 1386 aa23.32■■□□□ 1.32
PHGDH-227ENST00000641811 U2SURPO15042 1029 aaKnown RBP23.32■■□□□ 1.32
PHGDH-227ENST00000641811 ZNF530Q6P9A1 599 aaPredicted RBP23.32■■□□□ 1.32
PHGDH-227ENST00000641811 MPRIPQ6WCQ1 1025 aa23.32■■□□□ 1.32
PHGDH-227ENST00000641811 AMOTQ4VCS5 1084 aa23.31■■□□□ 1.32
PHGDH-227ENST00000641811 CFAP53Q96M91 514 aa23.31■■□□□ 1.32
PHGDH-227ENST00000641811 LRRC4BQ9NT99 713 aa23.3■■□□□ 1.32
PHGDH-227ENST00000641811 KCNQ4P56696 695 aa23.29■■□□□ 1.32
PHGDH-227ENST00000641811 PIGBQ92521 554 aa23.28■■□□□ 1.32
PHGDH-227ENST00000641811 ITGB4P16144 1822 aa23.27■■□□□ 1.32
PHGDH-227ENST00000641811 C1orf141Q5JVX7 400 aa23.25■■□□□ 1.31
PHGDH-227ENST00000641811 DCAF5Q96JK2 942 aa23.24■■□□□ 1.31
PHGDH-227ENST00000641811 STK32BQ9NY57 414 aa23.24■■□□□ 1.31
PHGDH-227ENST00000641811 TMOD3Q9NYL9 352 aa23.24■■□□□ 1.31
PHGDH-227ENST00000641811 KDM6AO15550 1401 aaPredicted RBP23.24■■□□□ 1.31
PHGDH-227ENST00000641811 HSP90AB1P08238 724 aaKnown RBP23.23■■□□□ 1.31
PHGDH-227ENST00000641811 MTHFSDQ2M296 383 aaKnown RBP23.23■■□□□ 1.31
PHGDH-227ENST00000641811 SLC27A3Q5K4L6 730 aa23.23■■□□□ 1.31
PHGDH-227ENST00000641811 LY75O60449 1722 aa23.22■■□□□ 1.31
PHGDH-227ENST00000641811 SLC15A2Q16348 729 aa23.22■■□□□ 1.31
PHGDH-227ENST00000641811 CCNL1Q9UK58 526 aaPredicted RBP23.22■■□□□ 1.31
PHGDH-227ENST00000641811 NUDCQ9Y266 331 aa23.22■■□□□ 1.31
PHGDH-227ENST00000641811 PALLDQ8WX93 1383 aa23.22■■□□□ 1.31
PHGDH-227ENST00000641811 SRCAPQ6ZRS2 3230 aa23.21■■□□□ 1.31
PHGDH-227ENST00000641811 RALBP1Q15311 655 aa23.21■■□□□ 1.31
PHGDH-227ENST00000641811 ZNF827Q17R98 1081 aa23.21■■□□□ 1.31
PHGDH-227ENST00000641811 PDGFDQ9GZP0 370 aaPredicted RBP23.21■■□□□ 1.31
PHGDH-227ENST00000641811 ASAP1Q9ULH1 1129 aa23.21■■□□□ 1.31
PHGDH-227ENST00000641811 PAPPAQ13219 1627 aa23.21■■□□□ 1.31
PHGDH-227ENST00000641811 ERVV-2B6SEH9 535 aa23.2■■□□□ 1.3
PHGDH-227ENST00000641811 U2AF1L5P0DN76 240 aaPredicted RBP23.2■■□□□ 1.3
PHGDH-227ENST00000641811 U2AF1Q01081 240 aaKnown RBP eCLIP23.2■■□□□ 1.3
PHGDH-227ENST00000641811 AKAP4Q5JQC9 854 aa23.2■■□□□ 1.3
PHGDH-227ENST00000641811 SMARCC1Q92922 1105 aaPredicted RBP23.19■■□□□ 1.3
PHGDH-227ENST00000641811 RSPH6AQ9H0K4 717 aa23.19■■□□□ 1.3
PHGDH-227ENST00000641811 ZNF316A6NFI3 1004 aaPredicted RBP23.18■■□□□ 1.3
PHGDH-227ENST00000641811 PRKAR2BP31323 418 aa23.18■■□□□ 1.3
PHGDH-227ENST00000641811 PHACTR3Q96KR7 559 aa23.18■■□□□ 1.3
PHGDH-227ENST00000641811 LGR6Q9HBX8 967 aa23.18■■□□□ 1.3
PHGDH-227ENST00000641811 CABP4P57796 275 aa23.17■■□□□ 1.3
PHGDH-227ENST00000641811 AKT1S1Q96B36 256 aa23.17■■□□□ 1.3
PHGDH-227ENST00000641811 ATG3Q9NT62 314 aa23.17■■□□□ 1.3
PHGDH-227ENST00000641811 NFATC2IPQ8NCF5 419 aa23.15■■□□□ 1.3
PHGDH-227ENST00000641811 MYBBP1AQ9BQG0 1328 aaKnown RBP23.13■■□□□ 1.29
PHGDH-227ENST00000641811 RNMTO43148 476 aaKnown RBP23.13■■□□□ 1.29
PHGDH-227ENST00000641811 CASZ1Q86V15 1759 aa23.12■■□□□ 1.29
PHGDH-227ENST00000641811 SCN11AQ9UI33 1791 aa23.12■■□□□ 1.29
PHGDH-227ENST00000641811 LOC102724428A0A0B4J2F2 783 aa23.12■■□□□ 1.29
PHGDH-227ENST00000641811 FCHSD2O94868 740 aa23.12■■□□□ 1.29
PHGDH-227ENST00000641811 SIK1P57059 783 aa23.12■■□□□ 1.29
PHGDH-227ENST00000641811 LRP5O75197 1615 aa23.11■■□□□ 1.29
PHGDH-227ENST00000641811 ZBTB7AO95365 584 aa23.11■■□□□ 1.29
PHGDH-227ENST00000641811 GAS2L2Q8NHY3 880 aa23.11■■□□□ 1.29
PHGDH-227ENST00000641811 PRKRIP1Q9H875 184 aaPredicted RBP23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms