RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MAP2P11137 1827 aaKnown RBP26.41■■□□□ 1.82
CLN3-260ENST00000637578 NCAPD2Q15021 1401 aa26.4■■□□□ 1.82
CLN3-260ENST00000637578 KNSTRNQ9Y448 316 aa26.4■■□□□ 1.82
CLN3-260ENST00000637578 NHSQ6T4R5 1651 aa26.39■■□□□ 1.82
CLN3-260ENST00000637578 ACSBG1Q96GR2 724 aa26.39■■□□□ 1.82
CLN3-260ENST00000637578 TNNT2P45379 298 aaPredicted RBP26.38■■□□□ 1.81
CLN3-260ENST00000637578 RAPGEF4Q8WZA2 1011 aa26.38■■□□□ 1.81
CLN3-260ENST00000637578 AMER1Q5JTC6 1135 aaPredicted RBP26.37■■□□□ 1.81
CLN3-260ENST00000637578 NBPF14Q5TI25 921 aa26.37■■□□□ 1.81
CLN3-260ENST00000637578 PER1O15534 1290 aaPredicted RBP26.36■■□□□ 1.81
CLN3-260ENST00000637578 TATP17735 454 aaPredicted RBP26.36■■□□□ 1.81
CLN3-260ENST00000637578 SHANK3Q9BYB0 1731 aa26.35■■□□□ 1.81
CLN3-260ENST00000637578 MORC1Q86VD1 984 aa26.34■■□□□ 1.81
CLN3-260ENST00000637578 EYA1Q99502 592 aa26.34■■□□□ 1.81
CLN3-260ENST00000637578 TXNRD1Q16881 649 aa26.33■■□□□ 1.81
CLN3-260ENST00000637578 EIF4A2Q14240 407 aaKnown RBP26.32■■□□□ 1.8
CLN3-260ENST00000637578 LRP5O75197 1615 aa26.31■■□□□ 1.8
CLN3-260ENST00000637578 ANO8Q9HCE9 1232 aaPredicted RBP26.29■■□□□ 1.8
CLN3-260ENST00000637578 PCDH11XQ9BZA7 1347 aa26.28■■□□□ 1.8
CLN3-260ENST00000637578 PCDH11YQ9BZA8 1340 aa26.28■■□□□ 1.8
CLN3-260ENST00000637578 BTAF1O14981 1849 aa26.28■■□□□ 1.8
CLN3-260ENST00000637578 PRIM1P49642 420 aaKnown RBP26.28■■□□□ 1.8
CLN3-260ENST00000637578 CYP27B1O15528 508 aa26.26■■□□□ 1.79
CLN3-260ENST00000637578 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.26■■□□□ 1.79
CLN3-260ENST00000637578 IGSF1Q8N6C5 1336 aa26.25■■□□□ 1.79
CLN3-260ENST00000637578 KAT6BQ8WYB5 2073 aa26.25■■□□□ 1.79
CLN3-260ENST00000637578 PLEKHG2Q9H7P9 1386 aa26.24■■□□□ 1.79
CLN3-260ENST00000637578 PKD1L3Q7Z443 1732 aa26.24■■□□□ 1.79
CLN3-260ENST00000637578 NPC1L1Q9UHC9 1359 aa26.24■■□□□ 1.79
CLN3-260ENST00000637578 NKX1-1Q15270 411 aaPredicted RBP26.22■■□□□ 1.79
CLN3-260ENST00000637578 SYTL4Q96C24 671 aaPredicted RBP26.22■■□□□ 1.79
CLN3-260ENST00000637578 SPG7Q9UQ90 795 aa26.22■■□□□ 1.79
CLN3-260ENST00000637578 DOT1LQ8TEK3 1739 aa26.22■■□□□ 1.79
CLN3-260ENST00000637578 LRRC4BQ9NT99 713 aa26.21■■□□□ 1.79
CLN3-260ENST00000637578 SLC15A2Q16348 729 aa26.2■■□□□ 1.79
CLN3-260ENST00000637578 SLC27A3Q5K4L6 730 aa26.2■■□□□ 1.78
CLN3-260ENST00000637578 STK32BQ9NY57 414 aa26.19■■□□□ 1.78
CLN3-260ENST00000637578 PAPPAQ13219 1627 aa26.18■■□□□ 1.78
CLN3-260ENST00000637578 IL13P35225 146 aa26.17■■□□□ 1.78
CLN3-260ENST00000637578 CC2D1BQ5T0F9 858 aaKnown RBP26.17■■□□□ 1.78
CLN3-260ENST00000637578 MTHFSP49914 203 aa26.16■■□□□ 1.78
CLN3-260ENST00000637578 PDGFDQ9GZP0 370 aaPredicted RBP26.15■■□□□ 1.78
CLN3-260ENST00000637578 PHKG2P15735 406 aa26.14■■□□□ 1.78
CLN3-260ENST00000637578 CASZ1Q86V15 1759 aa26.14■■□□□ 1.77
CLN3-260ENST00000637578 IFNL2Q8IZJ0 200 aa26.13■■□□□ 1.77
CLN3-260ENST00000637578 AKT1S1Q96B36 256 aa26.12■■□□□ 1.77
CLN3-260ENST00000637578 SPON1Q9HCB6 807 aa26.12■■□□□ 1.77
CLN3-260ENST00000637578 KDRP35968 1356 aa26.12■■□□□ 1.77
CLN3-260ENST00000637578 LY75O60449 1722 aa26.12■■□□□ 1.77
CLN3-260ENST00000637578 TOGARAM1Q9Y4F4 1720 aa26.11■■□□□ 1.77
CLN3-260ENST00000637578 ZNF827Q17R98 1081 aa26.11■■□□□ 1.77
CLN3-260ENST00000637578 AEBP1Q8IUX7 1158 aa26.11■■□□□ 1.77
CLN3-260ENST00000637578 MPRIPQ6WCQ1 1025 aa26.1■■□□□ 1.77
CLN3-260ENST00000637578 PLEKHO1Q53GL0 409 aaPredicted RBP26.09■■□□□ 1.77
CLN3-260ENST00000637578 KCNQ4P56696 695 aa26.08■■□□□ 1.77
CLN3-260ENST00000637578 AMOTQ4VCS5 1084 aa26.08■■□□□ 1.77
CLN3-260ENST00000637578 SULT6B1Q6IMI4 303 aa26.08■■□□□ 1.77
CLN3-260ENST00000637578 PIGBQ92521 554 aa26.08■■□□□ 1.77
CLN3-260ENST00000637578 CCNL1Q9UK58 526 aaPredicted RBP26.07■■□□□ 1.76
CLN3-260ENST00000637578 ITGB4P16144 1822 aa26.06■■□□□ 1.76
CLN3-260ENST00000637578 SMARCC1Q92922 1105 aaPredicted RBP26.05■■□□□ 1.76
CLN3-260ENST00000637578 PALLDQ8WX93 1383 aa26.05■■□□□ 1.76
CLN3-260ENST00000637578 DIAPH1O60610 1272 aaKnown RBP26.03■■□□□ 1.76
CLN3-260ENST00000637578 ZBTB7AO95365 584 aa26.03■■□□□ 1.76
CLN3-260ENST00000637578 HSP90AB1P08238 724 aaKnown RBP26.03■■□□□ 1.76
CLN3-260ENST00000637578 DCAF5Q96JK2 942 aa26.03■■□□□ 1.76
CLN3-260ENST00000637578 PTGER2P43116 358 aa26.02■■□□□ 1.76
CLN3-260ENST00000637578 ZNF530Q6P9A1 599 aaPredicted RBP26.02■■□□□ 1.76
CLN3-260ENST00000637578 MTFR1LQ9H019 292 aa26.02■■□□□ 1.76
CLN3-260ENST00000637578 TMOD3Q9NYL9 352 aa26.02■■□□□ 1.76
CLN3-260ENST00000637578 ERVV-2B6SEH9 535 aa26.01■■□□□ 1.75
CLN3-260ENST00000637578 COL3A1P02461 1466 aaPredicted RBP26.01■■□□□ 1.75
CLN3-260ENST00000637578 HMGB2P26583 209 aaKnown RBP26■■□□□ 1.75
CLN3-260ENST00000637578 PNPLA7Q6ZV29 1317 aa25.99■■□□□ 1.75
CLN3-260ENST00000637578 CNGB1Q14028 1251 aaPredicted RBP25.99■■□□□ 1.75
CLN3-260ENST00000637578 SGIP1Q9BQI5 828 aa25.99■■□□□ 1.75
CLN3-260ENST00000637578 QSER1Q2KHR3 1735 aa25.99■■□□□ 1.75
CLN3-260ENST00000637578 TFCP2L1Q9NZI6 479 aa25.99■■□□□ 1.75
CLN3-260ENST00000637578 ATF5Q9Y2D1 282 aaPredicted RBP25.99■■□□□ 1.75
CLN3-260ENST00000637578 KDM6AO15550 1401 aaPredicted RBP25.98■■□□□ 1.75
CLN3-260ENST00000637578 ASAP1Q9ULH1 1129 aa25.98■■□□□ 1.75
CLN3-260ENST00000637578 SLC16A10Q8TF71 515 aa25.97■■□□□ 1.75
CLN3-260ENST00000637578 HMOX1P09601 288 aa25.96■■□□□ 1.75
CLN3-260ENST00000637578 ATG3Q9NT62 314 aa25.96■■□□□ 1.75
CLN3-260ENST00000637578 C1orf141Q5JVX7 400 aa25.95■■□□□ 1.75
CLN3-260ENST00000637578 PPP1R1BQ9UD71 204 aaPredicted RBP25.95■■□□□ 1.75
CLN3-260ENST00000637578 LOC102724428A0A0B4J2F2 783 aa25.94■■□□□ 1.74
CLN3-260ENST00000637578 SIK1P57059 783 aa25.94■■□□□ 1.74
CLN3-260ENST00000637578 C5P01031 1676 aa25.93■■□□□ 1.74
CLN3-260ENST00000637578 PPP2R1AP30153 589 aa25.93■■□□□ 1.74
CLN3-260ENST00000637578 AKAP4Q5JQC9 854 aa25.92■■□□□ 1.74
CLN3-260ENST00000637578 TAF1LQ8IZX4 1826 aa25.92■■□□□ 1.74
CLN3-260ENST00000637578 TUBGCP6Q96RT7 1819 aa25.92■■□□□ 1.74
CLN3-260ENST00000637578 CABP4P57796 275 aa25.9■■□□□ 1.74
CLN3-260ENST00000637578 COL23A1Q86Y22 540 aaPredicted RBP25.9■■□□□ 1.74
CLN3-260ENST00000637578 MTHFSDQ2M296 383 aaKnown RBP25.89■■□□□ 1.73
CLN3-260ENST00000637578 CFAP53Q96M91 514 aa25.89■■□□□ 1.73
CLN3-260ENST00000637578 ITPK1Q13572 414 aa25.88■■□□□ 1.73
CLN3-260ENST00000637578 U2SURPO15042 1029 aaKnown RBP25.87■■□□□ 1.73
CLN3-260ENST00000637578 C4BP0C0L5 1744 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms