RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 LARP1Q6PKG0 1096 aaKnown RBP26.15■■□□□ 1.78
CLN3-250ENST00000636839 BTG4Q9NY30 223 aa26.14■■□□□ 1.78
CLN3-250ENST00000636839 WDR17Q8IZU2 1322 aa26.14■■□□□ 1.77
CLN3-250ENST00000636839 ZNF853P0CG23 659 aa26.14■■□□□ 1.77
CLN3-250ENST00000636839 TOM1L2Q6ZVM7 507 aa26.14■■□□□ 1.77
CLN3-250ENST00000636839 GNAT3A8MTJ3 354 aa26.13■■□□□ 1.77
CLN3-250ENST00000636839 FAM208AQ9UK61 1670 aaKnown RBP26.13■■□□□ 1.77
CLN3-250ENST00000636839 RRP1P56182 461 aaKnown RBP26.12■■□□□ 1.77
CLN3-250ENST00000636839 EVA1CP58658 441 aa26.12■■□□□ 1.77
CLN3-250ENST00000636839 IL17REQ8NFR9 667 aa26.12■■□□□ 1.77
CLN3-250ENST00000636839 RTF1Q92541 710 aaKnown RBP26.12■■□□□ 1.77
CLN3-250ENST00000636839 MBIPQ9NS73 344 aa26.12■■□□□ 1.77
CLN3-250ENST00000636839 BCAR3O75815 825 aa26.12■■□□□ 1.77
CLN3-250ENST00000636839 IFT57Q9NWB7 429 aa26.12■■□□□ 1.77
CLN3-250ENST00000636839 MIS18AQ9NYP9 233 aa26.12■■□□□ 1.77
CLN3-250ENST00000636839 PLEKHO1Q53GL0 409 aaPredicted RBP26.11■■□□□ 1.77
CLN3-250ENST00000636839 ZNF530Q6P9A1 599 aaPredicted RBP26.11■■□□□ 1.77
CLN3-250ENST00000636839 MEGF6O75095 1541 aa26.1■■□□□ 1.77
CLN3-250ENST00000636839 CALD1Q05682 793 aaKnown RBP26.1■■□□□ 1.77
CLN3-250ENST00000636839 RAPGEF4Q8WZA2 1011 aa26.1■■□□□ 1.77
CLN3-250ENST00000636839 CFAP44Q96MT7 982 aa26.1■■□□□ 1.77
CLN3-250ENST00000636839 MAP3K5Q99683 1374 aa26.1■■□□□ 1.77
CLN3-250ENST00000636839 CRB1P82279 1406 aa26.09■■□□□ 1.77
CLN3-250ENST00000636839 GNAI1P63096 354 aa26.09■■□□□ 1.77
CLN3-250ENST00000636839 LGR6Q9HBX8 967 aa26.09■■□□□ 1.77
CLN3-250ENST00000636839 USP35Q9P2H5 1018 aa26.09■■□□□ 1.77
CLN3-250ENST00000636839 AMOTQ4VCS5 1084 aa26.07■■□□□ 1.76
CLN3-250ENST00000636839 TATP17735 454 aaPredicted RBP26.07■■□□□ 1.76
CLN3-250ENST00000636839 BCL2L13Q9BXK5 485 aa26.07■■□□□ 1.76
CLN3-250ENST00000636839 MPRIPQ6WCQ1 1025 aa26.06■■□□□ 1.76
CLN3-250ENST00000636839 TSPYL6Q8N831 410 aa26.06■■□□□ 1.76
CLN3-250ENST00000636839 CHL1O00533 1208 aa26.05■■□□□ 1.76
CLN3-250ENST00000636839 HTATSF1O43719 755 aaKnown RBP26.05■■□□□ 1.76
CLN3-250ENST00000636839 ELL2O00472 640 aaPredicted RBP26.05■■□□□ 1.76
CLN3-250ENST00000636839 RARSP54136 660 aaKnown RBP26.05■■□□□ 1.76
CLN3-250ENST00000636839 KRT24Q2M2I5 525 aa26.04■■□□□ 1.76
CLN3-250ENST00000636839 AKAP4Q5JQC9 854 aa26.04■■□□□ 1.76
CLN3-250ENST00000636839 CARD10Q9BWT7 1032 aa26.04■■□□□ 1.76
CLN3-250ENST00000636839 HSPA1LP34931 641 aa26.04■■□□□ 1.76
CLN3-250ENST00000636839 C20orf194Q5TEA3 1177 aa26.03■■□□□ 1.76
CLN3-250ENST00000636839 C8orf58Q8NAV2 365 aa26.03■■□□□ 1.76
CLN3-250ENST00000636839 COL14A1Q05707 1796 aaKnown RBP26.02■■□□□ 1.76
CLN3-250ENST00000636839 C1orf141Q5JVX7 400 aa26.02■■□□□ 1.76
CLN3-250ENST00000636839 JCADQ9P266 1359 aa26■■□□□ 1.75
CLN3-250ENST00000636839 CEMIPQ8WUJ3 1361 aa25.99■■□□□ 1.75
CLN3-250ENST00000636839 CYP27B1O15528 508 aa25.98■■□□□ 1.75
CLN3-250ENST00000636839 TSPYL4Q9UJ04 414 aa25.98■■□□□ 1.75
CLN3-250ENST00000636839 SPG7Q9UQ90 795 aa25.98■■□□□ 1.75
CLN3-250ENST00000636839 RNMTO43148 476 aaKnown RBP25.98■■□□□ 1.75
CLN3-250ENST00000636839 VAMP4O75379 141 aa25.97■■□□□ 1.75
CLN3-250ENST00000636839 SSH1Q8WYL5 1049 aa25.97■■□□□ 1.75
CLN3-250ENST00000636839 IL2RBP14784 551 aa25.97■■□□□ 1.75
CLN3-250ENST00000636839 PHKG2P15735 406 aa25.97■■□□□ 1.75
CLN3-250ENST00000636839 LRRC37A3O60309 1634 aa25.96■■□□□ 1.75
CLN3-250ENST00000636839 TCERG1O14776 1098 aaKnown RBP25.96■■□□□ 1.75
CLN3-250ENST00000636839 TAF7Q15545 349 aaPredicted RBP25.96■■□□□ 1.75
CLN3-250ENST00000636839 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.96■■□□□ 1.75
CLN3-250ENST00000636839 OVOS2A0A0G2JMS6 1433 aa25.96■■□□□ 1.75
CLN3-250ENST00000636839 FRAT1Q92837 279 aaPredicted RBP25.95■■□□□ 1.74
CLN3-250ENST00000636839 CT47B1P0C2W7 299 aaPredicted RBP25.94■■□□□ 1.74
CLN3-250ENST00000636839 TWISTNBQ3B726 338 aaPredicted RBP25.94■■□□□ 1.74
CLN3-250ENST00000636839 ZCRB1Q8TBF4 217 aaKnown RBP25.93■■□□□ 1.74
CLN3-250ENST00000636839 C8orf37Q96NL8 207 aa25.93■■□□□ 1.74
CLN3-250ENST00000636839 TNNQ9UQP3 1299 aa25.93■■□□□ 1.74
CLN3-250ENST00000636839 PLCH1Q4KWH8 1693 aa25.93■■□□□ 1.74
CLN3-250ENST00000636839 EXOC6Q8TAG9 804 aa25.93■■□□□ 1.74
CLN3-250ENST00000636839 IFNL2Q8IZJ0 200 aa25.92■■□□□ 1.74
CLN3-250ENST00000636839 SMC4Q9NTJ3 1288 aa25.92■■□□□ 1.74
CLN3-250ENST00000636839 KCNQ3O43525 872 aa25.92■■□□□ 1.74
CLN3-250ENST00000636839 KDM6AO15550 1401 aaPredicted RBP25.91■■□□□ 1.74
CLN3-250ENST00000636839 TEFQ10587 303 aa25.9■■□□□ 1.74
CLN3-250ENST00000636839 DDX54Q8TDD1 881 aaKnown RBP25.9■■□□□ 1.74
CLN3-250ENST00000636839 LRP6O75581 1613 aa25.9■■□□□ 1.74
CLN3-250ENST00000636839 CRBNQ96SW2 442 aa25.9■■□□□ 1.74
CLN3-250ENST00000636839 PKD1L3Q7Z443 1732 aa25.89■■□□□ 1.74
CLN3-250ENST00000636839 NGLY1Q96IV0 654 aa25.89■■□□□ 1.74
CLN3-250ENST00000636839 SLIT2O94813 1529 aa25.88■■□□□ 1.73
CLN3-250ENST00000636839 CANXP27824 592 aaKnown RBP25.87■■□□□ 1.73
CLN3-250ENST00000636839 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.87■■□□□ 1.73
CLN3-250ENST00000636839 PARP4Q9UKK3 1724 aaKnown RBP25.87■■□□□ 1.73
CLN3-250ENST00000636839 BTBD11A6QL63 1104 aa25.87■■□□□ 1.73
CLN3-250ENST00000636839 PANK1Q8TE04 598 aa25.87■■□□□ 1.73
CLN3-250ENST00000636839 NRAPQ86VF7 1730 aa25.86■■□□□ 1.73
CLN3-250ENST00000636839 VIRMAQ69YN4 1812 aaKnown RBP25.86■■□□□ 1.73
CLN3-250ENST00000636839 NFATC2IPQ8NCF5 419 aa25.85■■□□□ 1.73
CLN3-250ENST00000636839 NOB1Q9ULX3 412 aaKnown RBP25.85■■□□□ 1.73
CLN3-250ENST00000636839 SPATA31A1Q5TZJ5 1347 aa25.85■■□□□ 1.73
CLN3-250ENST00000636839 SPATA31A6Q5VVP1 1343 aa25.85■■□□□ 1.73
CLN3-250ENST00000636839 PCDH11XQ9BZA7 1347 aa25.85■■□□□ 1.73
CLN3-250ENST00000636839 PCDH11YQ9BZA8 1340 aa25.85■■□□□ 1.73
CLN3-250ENST00000636839 DCAF5Q96JK2 942 aa25.85■■□□□ 1.73
CLN3-250ENST00000636839 RLBP1P12271 317 aa25.84■■□□□ 1.73
CLN3-250ENST00000636839 CLUAP1Q96AJ1 413 aa25.84■■□□□ 1.73
CLN3-250ENST00000636839 CCDC9Q9Y3X0 531 aaKnown RBP25.84■■□□□ 1.73
CLN3-250ENST00000636839 DISP2A7MBM2 1401 aa25.84■■□□□ 1.73
CLN3-250ENST00000636839 PLEKHG2Q9H7P9 1386 aa25.83■■□□□ 1.73
CLN3-250ENST00000636839 ALDH1L2Q3SY69 923 aa25.83■■□□□ 1.73
CLN3-250ENST00000636839 MRPL50Q8N5N7 158 aaKnown RBP25.83■■□□□ 1.73
CLN3-250ENST00000636839 ADAMTS7Q9UKP4 1686 aa25.83■■□□□ 1.73
CLN3-250ENST00000636839 ERICH6BQ5W0A0 696 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms