RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 SNX21Q969T3 373 aa8.31□□□□□ -1.08
SCN1A-213ENST00000636759 PDZRN3Q9UPQ7 1066 aa8.31□□□□□ -1.08
SCN1A-213ENST00000636759 SPATA31D1Q6ZQQ2 1576 aa8.31□□□□□ -1.08
SCN1A-213ENST00000636759 ANKRD7Q92527 254 aa8.31□□□□□ -1.08
SCN1A-213ENST00000636759 RASSF4Q9H2L5 321 aa8.3□□□□□ -1.08
SCN1A-213ENST00000636759 C14orf93Q9H972 538 aaKnown RBP8.3□□□□□ -1.08
SCN1A-213ENST00000636759 RIOK3O14730 519 aaKnown RBP8.3□□□□□ -1.08
SCN1A-213ENST00000636759 CFAP70Q5T0N1 1121 aa8.3□□□□□ -1.08
SCN1A-213ENST00000636759 MPNDQ8N594 471 aa8.3□□□□□ -1.08
SCN1A-213ENST00000636759 COG6Q9Y2V7 657 aa8.3□□□□□ -1.08
SCN1A-213ENST00000636759 CD163L1Q9NR16 1453 aa8.3□□□□□ -1.08
SCN1A-213ENST00000636759 FKBP5Q13451 457 aaPredicted RBP8.3□□□□□ -1.08
SCN1A-213ENST00000636759 LRSAM1Q6UWE0 723 aa8.3□□□□□ -1.08
SCN1A-213ENST00000636759 RWDD1Q9H446 243 aaPredicted RBP8.3□□□□□ -1.08
SCN1A-213ENST00000636759 DDIT3P35638 169 aa8.29□□□□□ -1.08
SCN1A-213ENST00000636759 PDE3AQ14432 1141 aa8.29□□□□□ -1.08
SCN1A-213ENST00000636759 GGT6Q6P531 493 aa8.29□□□□□ -1.08
SCN1A-213ENST00000636759 DDX41Q9UJV9 622 aaKnown RBP8.29□□□□□ -1.08
SCN1A-213ENST00000636759 SYCE3A1L190 88 aa8.29□□□□□ -1.08
SCN1A-213ENST00000636759 NUCB2P80303 420 aa8.29□□□□□ -1.08
SCN1A-213ENST00000636759 GOLGA6L1Q8N7Z2 621 aa8.29□□□□□ -1.08
SCN1A-213ENST00000636759 SMC4Q9NTJ3 1288 aa8.29□□□□□ -1.08
SCN1A-213ENST00000636759 GPATCH11Q8N954 259 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 NCAPGQ9BPX3 1015 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 TMX1Q9H3N1 280 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 CDCA8Q53HL2 280 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 CTNNA3Q9UI47 895 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 DLG5Q8TDM6 1919 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 K7ELQ4 463 aaPredicted RBP8.28□□□□□ -1.08
SCN1A-213ENST00000636759 BCAR3O75815 825 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 FAM69CQ0P6D2 419 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 PPP6R1Q9UPN7 881 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 TUBGCP6Q96RT7 1819 aa8.28□□□□□ -1.08
SCN1A-213ENST00000636759 NCOA3Q9Y6Q9 1424 aa8.27□□□□□ -1.08
SCN1A-213ENST00000636759 PRPF40AO75400 957 aaKnown RBP8.27□□□□□ -1.09
SCN1A-213ENST00000636759 SENP3Q9H4L4 574 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-213ENST00000636759 TTC12Q9H892 705 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-213ENST00000636759 ICE2Q659A1 982 aa8.27□□□□□ -1.09
SCN1A-213ENST00000636759 C17orf53Q8N3J3 647 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-213ENST00000636759 SLC26A8Q96RN1 970 aa8.27□□□□□ -1.09
SCN1A-213ENST00000636759 TSPY26PQ9H489 355 aa8.27□□□□□ -1.09
SCN1A-213ENST00000636759 RBM27Q9P2N5 1060 aaKnown RBP8.27□□□□□ -1.09
SCN1A-213ENST00000636759 MORC2Q9Y6X9 1032 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-213ENST00000636759 PHF14O94880 888 aa8.27□□□□□ -1.09
SCN1A-213ENST00000636759 RAD51AP2Q09MP3 1159 aa8.27□□□□□ -1.09
SCN1A-213ENST00000636759 SYAP1Q96A49 352 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-213ENST00000636759 HNRNPH2P55795 449 aaKnown RBP8.26□□□□□ -1.09
SCN1A-213ENST00000636759 MLECQ14165 292 aa8.26□□□□□ -1.09
SCN1A-213ENST00000636759 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.26□□□□□ -1.09
SCN1A-213ENST00000636759 PANK1Q8TE04 598 aa8.26□□□□□ -1.09
SCN1A-213ENST00000636759 CEP83Q9Y592 693 aa8.26□□□□□ -1.09
SCN1A-213ENST00000636759 DHX16O60231 1041 aaKnown RBP8.26□□□□□ -1.09
SCN1A-213ENST00000636759 PRR29P0C7W0 189 aa8.26□□□□□ -1.09
SCN1A-213ENST00000636759 MED14O60244 1454 aa8.26□□□□□ -1.09
SCN1A-213ENST00000636759 PTPRMP28827 1452 aa8.26□□□□□ -1.09
SCN1A-213ENST00000636759 KNDC1Q76NI1 1749 aa8.26□□□□□ -1.09
SCN1A-213ENST00000636759 PLCB2Q00722 1185 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 CLEC17AQ6ZS10 378 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 BRMS1Q9HCU9 246 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 TOMM22Q9NS69 142 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 CTIFO43310 598 aaKnown RBP8.25□□□□□ -1.09
SCN1A-213ENST00000636759 MBD3O95983 291 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 TEX35Q5T0J7 233 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 PUS7Q96PZ0 661 aaKnown RBP8.25□□□□□ -1.09
SCN1A-213ENST00000636759 NOL10Q9BSC4 688 aaKnown RBP8.25□□□□□ -1.09
SCN1A-213ENST00000636759 SPTLC3Q9NUV7 552 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 NRXN3Q9Y4C0 1643 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 NCBP1Q09161 790 aaKnown RBP8.25□□□□□ -1.09
SCN1A-213ENST00000636759 IDI1Q13907 227 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 SYCP1Q15431 976 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 LMBRD1Q9NUN5 540 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 ALKQ9UM73 1620 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 NSD3Q9BZ95 1437 aa8.25□□□□□ -1.09
SCN1A-213ENST00000636759 APAF1O14727 1248 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 CCDC172P0C7W6 258 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 EP400NLQ6ZTU2 488 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 CCDC146Q8IYE0 955 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 KNSTRNQ9Y448 316 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 C10orf67Q8IYJ2 551 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 KIF18AQ8NI77 898 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 CARD10Q9BWT7 1032 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 CWC15Q9P013 229 aaKnown RBP8.24□□□□□ -1.09
SCN1A-213ENST00000636759 KIF16BQ96L93 1317 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 DEF6Q9H4E7 631 aa8.24□□□□□ -1.09
SCN1A-213ENST00000636759 TPM3P06753 285 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 RLBP1P12271 317 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 CASQ1P31415 396 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 BRPF1P55201 1214 aaPredicted RBP8.23□□□□□ -1.09
SCN1A-213ENST00000636759 SRPK2P78362 688 aaKnown RBP8.23□□□□□ -1.09
SCN1A-213ENST00000636759 FAM184AQ8NB25 1140 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 CCDC27Q2M243 656 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 GRIPAP1Q4V328 841 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 NOM1Q5C9Z4 860 aaKnown RBP8.23□□□□□ -1.09
SCN1A-213ENST00000636759 CEP120Q8N960 986 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 CCDC112Q8NEF3 446 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 TNNQ9UQP3 1299 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 DLC1Q96QB1 1528 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 A2ML1A8K2U0 1454 aa8.23□□□□□ -1.09
SCN1A-213ENST00000636759 ZNF397Q8NF99 534 aaPredicted RBP8.23□□□□□ -1.09
SCN1A-213ENST00000636759 USP25Q9UHP3 1055 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms