RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 CASC1Q6TDU7 716 aa10.7□□□□□ -0.7
VCL-207ENST00000624354 COG3Q96JB2 828 aa10.7□□□□□ -0.7
VCL-207ENST00000624354 EDC4Q6P2E9 1401 aaKnown RBP10.7□□□□□ -0.7
VCL-207ENST00000624354 RIMS2Q9UQ26 1411 aa10.7□□□□□ -0.7
VCL-207ENST00000624354 FAM83GA6ND36 823 aa10.69□□□□□ -0.7
VCL-207ENST00000624354 NASPP49321 788 aaPredicted RBP10.69□□□□□ -0.7
VCL-207ENST00000624354 CCDC173Q0VFZ6 552 aa10.69□□□□□ -0.7
VCL-207ENST00000624354 ZSCAN30Q86W11 494 aa10.69□□□□□ -0.7
VCL-207ENST00000624354 CDK12Q9NYV4 1490 aaPredicted RBP10.69□□□□□ -0.7
VCL-207ENST00000624354 AATKQ6ZMQ8 1374 aa10.69□□□□□ -0.7
VCL-207ENST00000624354 MSNP26038 577 aaKnown RBP10.69□□□□□ -0.7
VCL-207ENST00000624354 RPAP2Q8IXW5 612 aaPredicted RBP10.69□□□□□ -0.7
VCL-207ENST00000624354 SLC26A8Q96RN1 970 aa10.69□□□□□ -0.7
VCL-207ENST00000624354 IBTKQ9P2D0 1353 aaPredicted RBP10.69□□□□□ -0.7
VCL-207ENST00000624354 DCTN1Q14203 1278 aa10.69□□□□□ -0.7
VCL-207ENST00000624354 SMAP1Q8IYB5 467 aaPredicted RBP10.69□□□□□ -0.7
VCL-207ENST00000624354 ANKRD44Q8N8A2 993 aa10.69□□□□□ -0.7
VCL-207ENST00000624354 USP26Q9BXU7 913 aa10.69□□□□□ -0.7
VCL-207ENST00000624354 PREX1Q8TCU6 1659 aa10.69□□□□□ -0.7
VCL-207ENST00000624354 WASLO00401 505 aaPredicted RBP10.68□□□□□ -0.7
VCL-207ENST00000624354 RRS1Q15050 365 aaKnown RBP10.68□□□□□ -0.7
VCL-207ENST00000624354 MYO5BQ9ULV0 1848 aa10.68□□□□□ -0.7
VCL-207ENST00000624354 ST18O60284 1047 aa10.68□□□□□ -0.7
VCL-207ENST00000624354 MCTP1Q6DN14 999 aa10.68□□□□□ -0.7
VCL-207ENST00000624354 C16orf71Q8IYS4 520 aaPredicted RBP10.68□□□□□ -0.7
VCL-207ENST00000624354 ZRANB1Q9UGI0 708 aa10.68□□□□□ -0.7
VCL-207ENST00000624354 CPSF1Q10570 1443 aaKnown RBP10.67□□□□□ -0.7
VCL-207ENST00000624354 DLC1Q96QB1 1528 aa10.67□□□□□ -0.7
VCL-207ENST00000624354 CWC22Q9HCG8 908 aaKnown RBP10.67□□□□□ -0.7
VCL-207ENST00000624354 PPP1R9BQ96SB3 815 aa10.67□□□□□ -0.7
VCL-207ENST00000624354 NCLP19338 710 aaKnown RBP10.66□□□□□ -0.7
VCL-207ENST00000624354 R3HCC1Q9Y3T6 440 aaKnown RBP10.66□□□□□ -0.7
VCL-207ENST00000624354 REC8O95072 547 aa10.66□□□□□ -0.7
VCL-207ENST00000624354 SDSP20132 328 aa10.66□□□□□ -0.7
VCL-207ENST00000624354 CEP85Q6P2H3 762 aa10.66□□□□□ -0.7
VCL-207ENST00000624354 MTERF4Q7Z6M4 381 aaKnown RBP10.66□□□□□ -0.7
VCL-207ENST00000624354 APBB1O00213 710 aa10.65□□□□□ -0.7
VCL-207ENST00000624354 ZNF445P59923 1031 aa10.65□□□□□ -0.7
VCL-207ENST00000624354 OTUD7AQ8TE49 926 aaPredicted RBP10.65□□□□□ -0.7
VCL-207ENST00000624354 NUDT16Q96DE0 195 aaKnown RBP10.65□□□□□ -0.7
VCL-207ENST00000624354 CCDC61Q9Y6R9 512 aa10.65□□□□□ -0.7
VCL-207ENST00000624354 CYP2E1P05181 493 aaPredicted RBP10.65□□□□□ -0.7
VCL-207ENST00000624354 CAVIN1Q6NZI2 390 aaKnown RBP10.65□□□□□ -0.7
VCL-207ENST00000624354 ATP10DQ9P241 1426 aa10.65□□□□□ -0.71
VCL-207ENST00000624354 MAP2P11137 1827 aaKnown RBP10.65□□□□□ -0.71
VCL-207ENST00000624354 PTPRCP08575 1304 aa10.65□□□□□ -0.71
VCL-207ENST00000624354 LMBRD1Q9NUN5 540 aa10.64□□□□□ -0.71
VCL-207ENST00000624354 CHL1O00533 1208 aa10.64□□□□□ -0.71
VCL-207ENST00000624354 SMARCA5O60264 1052 aaPredicted RBP10.64□□□□□ -0.71
VCL-207ENST00000624354 HMMRO75330 724 aa10.64□□□□□ -0.71
VCL-207ENST00000624354 KRT24Q2M2I5 525 aa10.64□□□□□ -0.71
VCL-207ENST00000624354 SULT6B1Q6IMI4 303 aa10.64□□□□□ -0.71
VCL-207ENST00000624354 RTL1A6NKG5 1358 aa10.64□□□□□ -0.71
VCL-207ENST00000624354 RICTORQ6R327 1708 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 ZHX1Q9UKY1 873 aaPredicted RBP10.63□□□□□ -0.71
VCL-207ENST00000624354 HSPA2P54652 639 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 PDE4CQ08493 712 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 ZSCAN23Q3MJ62 389 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 MEIS3Q99687 375 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 MSH6P52701 1360 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 KIAA0232Q92628 1395 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 UQCRHLA0A096LP55 91 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 ERC2O15083 957 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 UQCRHP07919 91 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 PKP1Q13835 747 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 TXNDC2Q86VQ3 553 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 AEBP1Q8IUX7 1158 aa10.63□□□□□ -0.71
VCL-207ENST00000624354 A2ML1A8K2U0 1454 aa10.62□□□□□ -0.71
VCL-207ENST00000624354 KNDC1Q76NI1 1749 aa10.62□□□□□ -0.71
VCL-207ENST00000624354 NCKAP5LQ9HCH0 1330 aa10.62□□□□□ -0.71
VCL-207ENST00000624354 RGS12O14924 1447 aa10.62□□□□□ -0.71
VCL-207ENST00000624354 PRPF40AO75400 957 aaKnown RBP10.62□□□□□ -0.71
VCL-207ENST00000624354 EIF4A2Q14240 407 aaKnown RBP10.62□□□□□ -0.71
VCL-207ENST00000624354 MCM10Q7L590 875 aa10.62□□□□□ -0.71
VCL-207ENST00000624354 ZGPATQ8N5A5 531 aaKnown RBP10.62□□□□□ -0.71
VCL-207ENST00000624354 PPP6R1Q9UPN7 881 aa10.62□□□□□ -0.71
VCL-207ENST00000624354 PRDM10Q9NQV6 1147 aa10.61□□□□□ -0.71
VCL-207ENST00000624354 SLC4A2P04920 1241 aa10.61□□□□□ -0.71
VCL-207ENST00000624354 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.61□□□□□ -0.71
VCL-207ENST00000624354 CPS1P31327 1500 aa10.61□□□□□ -0.71
VCL-207ENST00000624354 HS1BP3Q53T59 392 aa10.6□□□□□ -0.71
VCL-207ENST00000624354 DYNC1I1O14576 645 aa10.6□□□□□ -0.71
VCL-207ENST00000624354 OSBPL3Q9H4L5 887 aa10.6□□□□□ -0.71
VCL-207ENST00000624354 SOX12O15370 315 aa10.6□□□□□ -0.71
VCL-207ENST00000624354 PDE1AP54750 535 aa10.6□□□□□ -0.71
VCL-207ENST00000624354 SLC4A10Q6U841 1118 aa10.6□□□□□ -0.71
VCL-207ENST00000624354 METP08581 1390 aa10.59□□□□□ -0.71
VCL-207ENST00000624354 PRIM1P49642 420 aaKnown RBP10.59□□□□□ -0.71
VCL-207ENST00000624354 CCT4P50991 539 aaKnown RBP10.59□□□□□ -0.71
VCL-207ENST00000624354 UTP14CQ5TAP6 766 aaKnown RBP10.59□□□□□ -0.71
VCL-207ENST00000624354 RBSNQ9H1K0 784 aa10.59□□□□□ -0.71
VCL-207ENST00000624354 MCM2P49736 904 aa10.59□□□□□ -0.71
VCL-207ENST00000624354 NEK4P51957 841 aa10.59□□□□□ -0.71
VCL-207ENST00000624354 ZDHHC9Q9Y397 364 aa10.59□□□□□ -0.71
VCL-207ENST00000624354 DLG5Q8TDM6 1919 aa10.59□□□□□ -0.71
VCL-207ENST00000624354 GPT2Q8TD30 523 aa10.58□□□□□ -0.72
VCL-207ENST00000624354 SIRT1Q96EB6 747 aa10.58□□□□□ -0.72
VCL-207ENST00000624354 MCCP23508 829 aa10.58□□□□□ -0.72
VCL-207ENST00000624354 DMTNQ08495 405 aa10.58□□□□□ -0.72
VCL-207ENST00000624354 ZNF500O60304 480 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms