RNA–Protein interactions for RNA: ENST00000621708.4

PCDH15-233, Transcript of protocadherin related 15, human

APPRIS ALT2 TSL 5 BASIC

Gene PCDH15, Length 5,700 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH15-233	ENST00000621708	CLSTN1	O94985	981 aa		10.55	□□□□□ -0.72
PCDH15-233	ENST00000621708	RARS	P54136	660 aa	Known RBP	10.55	□□□□□ -0.72
PCDH15-233	ENST00000621708	MCM10	Q7L590	875 aa		10.55	□□□□□ -0.72
PCDH15-233	ENST00000621708	PLXNC1	O60486	1568 aa		10.54	□□□□□ -0.72
PCDH15-233	ENST00000621708	TESK2	Q96S53	571 aa		10.54	□□□□□ -0.72
PCDH15-233	ENST00000621708	FOXD4L1	Q9NU39	408 aa		10.54	□□□□□ -0.72
PCDH15-233	ENST00000621708	CEP126	Q9P2H0	1117 aa		10.54	□□□□□ -0.72
PCDH15-233	ENST00000621708	HECW2	Q9P2P5	1572 aa		10.54	□□□□□ -0.72
PCDH15-233	ENST00000621708	CHD1L	Q86WJ1	897 aa		10.54	□□□□□ -0.72
PCDH15-233	ENST00000621708	BRMS1	Q9HCU9	246 aa		10.54	□□□□□ -0.72
PCDH15-233	ENST00000621708	KCNA6	P17658	529 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	NACAP1	Q9BZK3	213 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	AKAP2	Q9Y2D5	859 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	SOS1	Q07889	1333 aa	Predicted RBP	10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	TMEM2	Q9UHN6	1383 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	DCAF8L1	A6NGE4	600 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	IGHMBP2	P38935	993 aa	Known RBP	10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	SRGAP3	O43295	1099 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	DHX16	O60231	1041 aa	Known RBP	10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	EDC4	Q6P2E9	1401 aa	Known RBP	10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	ADCY10	Q96PN6	1610 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	PIK3R4	Q99570	1358 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708		A0A087WZG4	1122 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	ANKRD1	Q15327	319 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	NGLY1	Q96IV0	654 aa		10.53	□□□□□ -0.72
PCDH15-233	ENST00000621708	VPS53	Q5VIR6	699 aa		10.52	□□□□□ -0.72
PCDH15-233	ENST00000621708	MCTP1	Q6DN14	999 aa		10.52	□□□□□ -0.72
PCDH15-233	ENST00000621708	DNAJC2	Q99543	621 aa	Known RBP	10.52	□□□□□ -0.72
PCDH15-233	ENST00000621708	TTC37	Q6PGP7	1564 aa		10.52	□□□□□ -0.73
PCDH15-233	ENST00000621708	KIF1BP	Q96EK5	621 aa		10.52	□□□□□ -0.73
PCDH15-233	ENST00000621708	PDC	P20941	246 aa		10.52	□□□□□ -0.73
PCDH15-233	ENST00000621708	ARHGAP45	Q92619	1136 aa		10.52	□□□□□ -0.73
PCDH15-233	ENST00000621708	TPM2	P07951	284 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	TMEM57	Q8N5G2	664 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	C1orf115	Q9H7X2	142 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	DDX49	Q9Y6V7	483 aa	Known RBP	10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	PDIA4	P13667	645 aa	Known RBP	10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	DNAAF4	Q8WXU2	420 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	SSH1	Q8WYL5	1049 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	CTNNA3	Q9UI47	895 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	SHROOM2	Q13796	1616 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	FAM177B	A6PVY3	158 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	AKAP4	Q5JQC9	854 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	TCEAL9	Q9UHQ7	104 aa		10.51	□□□□□ -0.73
PCDH15-233	ENST00000621708	ZPR1	O75312	459 aa		10.5	□□□□□ -0.73
PCDH15-233	ENST00000621708	USHBP1	Q8N6Y0	703 aa		10.5	□□□□□ -0.73
PCDH15-233	ENST00000621708	GZF1	Q9H116	711 aa	Predicted RBP	10.5	□□□□□ -0.73
PCDH15-233	ENST00000621708	ADAMTS2	O95450	1211 aa		10.5	□□□□□ -0.73
PCDH15-233	ENST00000621708	MPRIP	Q6WCQ1	1025 aa		10.5	□□□□□ -0.73
PCDH15-233	ENST00000621708	AACS	Q86V21	672 aa		10.5	□□□□□ -0.73
PCDH15-233	ENST00000621708		A0A1W2PP64	1363 aa		10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	SNRPA1	P09661	255 aa	Known RBP	10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	KRT32	Q14532	448 aa		10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	IL27	Q8NEV9	243 aa		10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	NCKAP5L	Q9HCH0	1330 aa		10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	SMARCC1	Q92922	1105 aa	Predicted RBP	10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	MYOM2	P54296	1465 aa		10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	LRRC59	Q96AG4	307 aa	Known RBP	10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	INSR	P06213	1382 aa		10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	SBNO2	Q9Y2G9	1366 aa		10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	THUMPD2	Q9BTF0	503 aa	Known RBP	10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	GOLGA6L19	H0YKK7	550 aa		10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	TPD52L1	Q16890	204 aa	Predicted RBP	10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	ZCRB1	Q8TBF4	217 aa	Known RBP	10.49	□□□□□ -0.73
PCDH15-233	ENST00000621708	GLRX3	O76003	335 aa	Known RBP	10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	DEK	P35659	375 aa	Known RBP	10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	EFCAB6	Q5THR3	1501 aa		10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	PLEKHH1	Q9ULM0	1364 aa		10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	NLRP1	Q9C000	1473 aa		10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	DCTN1	Q14203	1278 aa		10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	NCBP3	Q53F19	620 aa	Known RBP	10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	YEATS2	Q9ULM3	1422 aa		10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	FLII	Q13045	1269 aa		10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	CWC22	Q9HCG8	908 aa	Known RBP	10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	BABAM1	Q9NWV8	329 aa		10.48	□□□□□ -0.73
PCDH15-233	ENST00000621708	TPM1	P09493	284 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	ANKRD20A12P	Q8NF67	263 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	POLK	Q9UBT6	870 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	CYP46A1	Q9Y6A2	500 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	MYD88	Q99836	296 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	ARHGEF10	O15013	1369 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	PTCD1	O75127	700 aa	Known RBP	10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	TPM3	P06753	285 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	VPS37C	A5D8V6	355 aa	Predicted RBP	10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	BECN2	A8MW95	431 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	UBAP1L	F5GYI3	381 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	IFIT1	P09914	478 aa	Known RBP	10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	EIF4A2	Q14240	407 aa	Known RBP	10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	AEBP1	Q8IUX7	1158 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	KLHL34	Q8N239	644 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	SIL1	Q9H173	461 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	MBIP	Q9NS73	344 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	FOXD4L5	Q5VV16	416 aa	Predicted RBP	10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	CCDC73	Q6ZRK6	1079 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	IP6K1	Q92551	441 aa		10.47	□□□□□ -0.73
PCDH15-233	ENST00000621708	SBNO1	A3KN83	1393 aa		10.46	□□□□□ -0.73
PCDH15-233	ENST00000621708	PLEKHG1	Q9ULL1	1385 aa		10.46	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms