RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 MEGF6O75095 1541 aa16.5■□□□□ 0.23
UPF3B-204ENST00000619445 QSER1Q2KHR3 1735 aa16.5■□□□□ 0.23
UPF3B-204ENST00000619445 DOT1LQ8TEK3 1739 aa16.5■□□□□ 0.23
UPF3B-204ENST00000619445 FBLN1P23142 703 aa16.5■□□□□ 0.23
UPF3B-204ENST00000619445 PTGER2P43116 358 aa16.5■□□□□ 0.23
UPF3B-204ENST00000619445 NBPF6Q5VWK0 638 aa16.5■□□□□ 0.23
UPF3B-204ENST00000619445 SLC16A10Q8TF71 515 aa16.5■□□□□ 0.23
UPF3B-204ENST00000619445 SYTL4Q96C24 671 aaPredicted RBP16.5■□□□□ 0.23
UPF3B-204ENST00000619445 NBPF4Q96M43 638 aa16.5■□□□□ 0.23
UPF3B-204ENST00000619445 PCGF6Q9BYE7 350 aa16.5■□□□□ 0.23
UPF3B-204ENST00000619445 SHANK3Q9BYB0 1731 aa16.49■□□□□ 0.23
UPF3B-204ENST00000619445 PRIM1P49642 420 aaKnown RBP16.49■□□□□ 0.23
UPF3B-204ENST00000619445 PCDH11XQ9BZA7 1347 aa16.48■□□□□ 0.23
UPF3B-204ENST00000619445 PCDH11YQ9BZA8 1340 aa16.48■□□□□ 0.23
UPF3B-204ENST00000619445 ATF5Q9Y2D1 282 aaPredicted RBP16.48■□□□□ 0.23
UPF3B-204ENST00000619445 LY75O60449 1722 aa16.47■□□□□ 0.23
UPF3B-204ENST00000619445 HSP90AB2PQ58FF8 381 aa16.47■□□□□ 0.23
UPF3B-204ENST00000619445 CARD14Q9BXL6 1004 aa16.47■□□□□ 0.23
UPF3B-204ENST00000619445 PDGFDQ9GZP0 370 aaPredicted RBP16.47■□□□□ 0.23
UPF3B-204ENST00000619445 AKT1S1Q96B36 256 aa16.46■□□□□ 0.23
UPF3B-204ENST00000619445 LRRC4BQ9NT99 713 aa16.46■□□□□ 0.23
UPF3B-204ENST00000619445 NSD2O96028 1365 aa16.46■□□□□ 0.23
UPF3B-204ENST00000619445 ANKRD26Q9UPS8 1709 aa16.46■□□□□ 0.22
UPF3B-204ENST00000619445 YY1P25490 414 aa16.45■□□□□ 0.22
UPF3B-204ENST00000619445 EIF4G2P78344 907 aaKnown RBP eCLIP16.45■□□□□ 0.222e-9■■■■■ 39.4
UPF3B-204ENST00000619445 MAP3K5Q99683 1374 aa16.45■□□□□ 0.22
UPF3B-204ENST00000619445 ARXQ96QS3 562 aa16.44■□□□□ 0.22
UPF3B-204ENST00000619445 SGIP1Q9BQI5 828 aa16.44■□□□□ 0.22
UPF3B-204ENST00000619445 WASHC2AQ641Q2 1341 aa16.44■□□□□ 0.22
UPF3B-204ENST00000619445 MAP2P11137 1827 aaKnown RBP16.44■□□□□ 0.22
UPF3B-204ENST00000619445 PLEKHG2Q9H7P9 1386 aa16.43■□□□□ 0.22
UPF3B-204ENST00000619445 POLD1P28340 1107 aa16.43■□□□□ 0.22
UPF3B-204ENST00000619445 ZNF827Q17R98 1081 aa16.43■□□□□ 0.22
UPF3B-204ENST00000619445 USHBP1Q8N6Y0 703 aa16.43■□□□□ 0.22
UPF3B-204ENST00000619445 TFCP2L1Q9NZI6 479 aa16.43■□□□□ 0.22
UPF3B-204ENST00000619445 CCNL1Q9UK58 526 aaPredicted RBP16.43■□□□□ 0.22
UPF3B-204ENST00000619445 NCAPD2Q15021 1401 aa16.43■□□□□ 0.22
UPF3B-204ENST00000619445 SYT17Q9BSW7 474 aa16.42■□□□□ 0.22
UPF3B-204ENST00000619445 FHDC1Q9C0D6 1143 aaPredicted RBP16.42■□□□□ 0.22
UPF3B-204ENST00000619445 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.42■□□□□ 0.22
UPF3B-204ENST00000619445 SPG7Q9UQ90 795 aa16.42■□□□□ 0.22
UPF3B-204ENST00000619445 EMILIN1Q9Y6C2 1016 aa16.42■□□□□ 0.22
UPF3B-204ENST00000619445 PKD1L3Q7Z443 1732 aa16.41■□□□□ 0.22
UPF3B-204ENST00000619445 PPM1GO15355 546 aaPredicted RBP16.41■□□□□ 0.22
UPF3B-204ENST00000619445 SMARCC1Q92922 1105 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-204ENST00000619445 COL24A1Q17RW2 1714 aa16.39■□□□□ 0.21
UPF3B-204ENST00000619445 FLAD1Q8NFF5 587 aa16.39■□□□□ 0.21
UPF3B-204ENST00000619445 CCER1Q8TC90 406 aaPredicted RBP16.39■□□□□ 0.21
UPF3B-204ENST00000619445 PNPLA7Q6ZV29 1317 aa16.39■□□□□ 0.21
UPF3B-204ENST00000619445 POLR3GLQ9BT43 218 aa16.38■□□□□ 0.21
UPF3B-204ENST00000619445 CYP27B1O15528 508 aa16.38■□□□□ 0.21
UPF3B-204ENST00000619445 NKX1-1Q15270 411 aaPredicted RBP16.38■□□□□ 0.21
UPF3B-204ENST00000619445 POLKQ9UBT6 870 aa16.38■□□□□ 0.21
UPF3B-204ENST00000619445 TUBGCP6Q96RT7 1819 aa16.37■□□□□ 0.21
UPF3B-204ENST00000619445 CHD4Q14839 1912 aa16.37■□□□□ 0.21
UPF3B-204ENST00000619445 ITGB4P16144 1822 aa16.36■□□□□ 0.21
UPF3B-204ENST00000619445 PALLDQ8WX93 1383 aa16.36■□□□□ 0.21
UPF3B-204ENST00000619445 C5P01031 1676 aa16.36■□□□□ 0.21
UPF3B-204ENST00000619445 HSPA5P11021 654 aaKnown RBP16.36■□□□□ 0.21
UPF3B-204ENST00000619445 MPRIPQ6WCQ1 1025 aa16.36■□□□□ 0.21
UPF3B-204ENST00000619445 EYA1Q99502 592 aa16.35■□□□□ 0.21
UPF3B-204ENST00000619445 IFNL2Q8IZJ0 200 aa16.34■□□□□ 0.21
UPF3B-204ENST00000619445 TAF1LQ8IZX4 1826 aa16.34■□□□□ 0.21
UPF3B-204ENST00000619445 MSH5O43196 834 aa16.33■□□□□ 0.2
UPF3B-204ENST00000619445 KCNQ4P56696 695 aa16.33■□□□□ 0.2
UPF3B-204ENST00000619445 PANK3Q9H999 370 aa16.33■□□□□ 0.2
UPF3B-204ENST00000619445 HSP90AB1P08238 724 aaKnown RBP16.32■□□□□ 0.2
UPF3B-204ENST00000619445 TMOD3Q9NYL9 352 aa16.32■□□□□ 0.2
UPF3B-204ENST00000619445 TOGARAM1Q9Y4F4 1720 aa16.32■□□□□ 0.2
UPF3B-204ENST00000619445 EIF4A2Q14240 407 aaKnown RBP16.31■□□□□ 0.2
UPF3B-204ENST00000619445 KNSTRNQ9Y448 316 aa16.31■□□□□ 0.2
UPF3B-204ENST00000619445 IGSF1Q8N6C5 1336 aa16.3■□□□□ 0.2
UPF3B-204ENST00000619445 TNNT2P45379 298 aaPredicted RBP16.3■□□□□ 0.2
UPF3B-204ENST00000619445 COL23A1Q86Y22 540 aaPredicted RBP16.3■□□□□ 0.2
UPF3B-204ENST00000619445 PIGBQ92521 554 aa16.3■□□□□ 0.2
UPF3B-204ENST00000619445 AK7Q96M32 723 aa16.3■□□□□ 0.2
UPF3B-204ENST00000619445 PHKG2P15735 406 aa16.29■□□□□ 0.2
UPF3B-204ENST00000619445 GPR162Q16538 588 aa16.29■□□□□ 0.2
UPF3B-204ENST00000619445 MORC1Q86VD1 984 aa16.29■□□□□ 0.2
UPF3B-204ENST00000619445 C4BP0C0L5 1744 aa16.29■□□□□ 0.2
UPF3B-204ENST00000619445 AMOTQ4VCS5 1084 aa16.28■□□□□ 0.2
UPF3B-204ENST00000619445 PLEKHO1Q53GL0 409 aaPredicted RBP16.28■□□□□ 0.2
UPF3B-204ENST00000619445 KLHL34Q8N239 644 aa16.28■□□□□ 0.2
UPF3B-204ENST00000619445 LOC102724428A0A0B4J2F2 783 aa16.27■□□□□ 0.2
UPF3B-204ENST00000619445 SIK1P57059 783 aa16.27■□□□□ 0.2
UPF3B-204ENST00000619445 ERVV-2B6SEH9 535 aa16.26■□□□□ 0.19
UPF3B-204ENST00000619445 SSFA2P28290 1259 aa16.26■□□□□ 0.19
UPF3B-204ENST00000619445 DCAF5Q96JK2 942 aa16.26■□□□□ 0.19
UPF3B-204ENST00000619445 UBR3Q6ZT12 1888 aa16.26■□□□□ 0.19
UPF3B-204ENST00000619445 GRIN3BO60391 1043 aa16.26■□□□□ 0.19
UPF3B-204ENST00000619445 CD2APQ9Y5K6 639 aa16.26■□□□□ 0.19
UPF3B-204ENST00000619445 UTRNP46939 3433 aa16.24■□□□□ 0.19
UPF3B-204ENST00000619445 ZNF831Q5JPB2 1677 aa16.24■□□□□ 0.19
UPF3B-204ENST00000619445 ZNF784Q8NCA9 323 aaPredicted RBP16.24■□□□□ 0.19
UPF3B-204ENST00000619445 ATP6V1AP38606 617 aa16.23■□□□□ 0.19
UPF3B-204ENST00000619445 C1orf141Q5JVX7 400 aa16.23■□□□□ 0.19
UPF3B-204ENST00000619445 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.22■□□□□ 0.19
UPF3B-204ENST00000619445 ZNF530Q6P9A1 599 aaPredicted RBP16.22■□□□□ 0.19
UPF3B-204ENST00000619445 ASAP1Q9ULH1 1129 aa16.22■□□□□ 0.19
UPF3B-204ENST00000619445 MSL1Q68DK7 614 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms