RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SENP3-EIF4A1A0A087X0R7 540 aa8.85□□□□□ -0.99
CUX1-220ENST00000607092 GIGYF1O75420 1035 aaPredicted RBP8.85□□□□□ -0.99
CUX1-220ENST00000607092 DDX54Q8TDD1 881 aaKnown RBP8.85□□□□□ -0.99
CUX1-220ENST00000607092 AKT1S1Q96B36 256 aa8.85□□□□□ -0.99
CUX1-220ENST00000607092 RGPD5Q99666 1765 aa8.85□□□□□ -0.99
CUX1-220ENST00000607092 SMG6Q86US8 1419 aaKnown RBP8.85□□□□□ -0.99
CUX1-220ENST00000607092 KAT6BQ8WYB5 2073 aa8.85□□□□□ -0.99
CUX1-220ENST00000607092 RTL1A6NKG5 1358 aa8.85□□□□□ -0.99
CUX1-220ENST00000607092 PAPPAQ13219 1627 aa8.84□□□□□ -0.99
CUX1-220ENST00000607092 AMPHP49418 695 aa8.84□□□□□ -0.99
CUX1-220ENST00000607092 ZCRB1Q8TBF4 217 aaKnown RBP8.84□□□□□ -0.99
CUX1-220ENST00000607092 SYTL4Q96C24 671 aaPredicted RBP8.84□□□□□ -0.99
CUX1-220ENST00000607092 BTAF1O14981 1849 aa8.84□□□□□ -0.99
CUX1-220ENST00000607092 TONSLQ96HA7 1378 aa8.84□□□□□ -0.99
CUX1-220ENST00000607092 USP47Q96K76 1375 aa8.84□□□□□ -0.99
CUX1-220ENST00000607092 ZNF827Q17R98 1081 aa8.83□□□□□ -1
CUX1-220ENST00000607092 KLHL34Q8N239 644 aa8.83□□□□□ -1
CUX1-220ENST00000607092 RAPGEF4Q8WZA2 1011 aa8.83□□□□□ -1
CUX1-220ENST00000607092 SIN3AQ96ST3 1273 aa8.83□□□□□ -1
CUX1-220ENST00000607092 SLC12A5Q9H2X9 1139 aa8.83□□□□□ -1
CUX1-220ENST00000607092 LRRC4BQ9NT99 713 aa8.83□□□□□ -1
CUX1-220ENST00000607092 A0A1W2PP64 1363 aa8.83□□□□□ -1
CUX1-220ENST00000607092 CD163L1Q9NR16 1453 aa8.83□□□□□ -1
CUX1-220ENST00000607092 QSER1Q2KHR3 1735 aa8.83□□□□□ -1
CUX1-220ENST00000607092 PNPLA7Q6ZV29 1317 aa8.82□□□□□ -1
CUX1-220ENST00000607092 NSD3Q9BZ95 1437 aa8.82□□□□□ -1
CUX1-220ENST00000607092 LTN1O94822 1766 aa8.82□□□□□ -1
CUX1-220ENST00000607092 PRIM1P49642 420 aaKnown RBP8.82□□□□□ -1
CUX1-220ENST00000607092 CDCA8Q53HL2 280 aa8.82□□□□□ -1
CUX1-220ENST00000607092 AMER1Q5JTC6 1135 aaPredicted RBP8.82□□□□□ -1
CUX1-220ENST00000607092 CCNL1Q9UK58 526 aaPredicted RBP8.82□□□□□ -1
CUX1-220ENST00000607092 KIF24Q5T7B8 1368 aa8.82□□□□□ -1
CUX1-220ENST00000607092 TATP17735 454 aaPredicted RBP8.81□□□□□ -1
CUX1-220ENST00000607092 HOXC9P31274 260 aa8.81□□□□□ -1
CUX1-220ENST00000607092 PELP1Q8IZL8 1130 aaKnown RBP8.81□□□□□ -1
CUX1-220ENST00000607092 SMARCC1Q92922 1105 aaPredicted RBP8.81□□□□□ -1
CUX1-220ENST00000607092 LTV1Q96GA3 475 aaPredicted RBP8.81□□□□□ -1
CUX1-220ENST00000607092 MAP3K19Q56UN5 1328 aa8.8□□□□□ -1
CUX1-220ENST00000607092 PCDH11XQ9BZA7 1347 aa8.8□□□□□ -1
CUX1-220ENST00000607092 PCDH11YQ9BZA8 1340 aa8.8□□□□□ -1
CUX1-220ENST00000607092 CD2APQ9Y5K6 639 aa8.8□□□□□ -1
CUX1-220ENST00000607092 NSD2O96028 1365 aa8.79□□□□□ -1
CUX1-220ENST00000607092 TMF1P82094 1093 aa8.79□□□□□ -1
CUX1-220ENST00000607092 COL24A1Q17RW2 1714 aa8.78□□□□□ -1
CUX1-220ENST00000607092 INSRP06213 1382 aa8.77□□□□□ -1.01
CUX1-220ENST00000607092 FLT4P35916 1363 aa8.77□□□□□ -1.01
CUX1-220ENST00000607092 CEP350Q5VT06 3117 aa8.77□□□□□ -1.01
CUX1-220ENST00000607092 GOLGB1Q14789 3259 aaKnown RBP8.77□□□□□ -1.01
CUX1-220ENST00000607092 LY75O60449 1722 aa8.77□□□□□ -1.01
CUX1-220ENST00000607092 PLEKHG2Q9H7P9 1386 aa8.76□□□□□ -1.01
CUX1-220ENST00000607092 ST20-MTHFSA0A0A6YYL1 179 aa8.76□□□□□ -1.01
CUX1-220ENST00000607092 COL23A1Q86Y22 540 aaPredicted RBP8.76□□□□□ -1.01
CUX1-220ENST00000607092 AK7Q96M32 723 aa8.76□□□□□ -1.01
CUX1-220ENST00000607092 TESK2Q96S53 571 aa8.76□□□□□ -1.01
CUX1-220ENST00000607092 GPBP1L1Q9HC44 474 aaPredicted RBP8.76□□□□□ -1.01
CUX1-220ENST00000607092 SPG7Q9UQ90 795 aa8.76□□□□□ -1.01
CUX1-220ENST00000607092 MEGF6O75095 1541 aa8.75□□□□□ -1.01
CUX1-220ENST00000607092 PALLDQ8WX93 1383 aa8.75□□□□□ -1.01
CUX1-220ENST00000607092 DOT1LQ8TEK3 1739 aa8.75□□□□□ -1.01
CUX1-220ENST00000607092 FYB1O15117 783 aa8.75□□□□□ -1.01
CUX1-220ENST00000607092 SSFA2P28290 1259 aa8.75□□□□□ -1.01
CUX1-220ENST00000607092 NBPF6Q5VWK0 638 aa8.75□□□□□ -1.01
CUX1-220ENST00000607092 NLGN2Q8NFZ4 835 aa8.75□□□□□ -1.01
CUX1-220ENST00000607092 NBPF4Q96M43 638 aa8.75□□□□□ -1.01
CUX1-220ENST00000607092 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.75□□□□□ -1.012e-6■■■■□ 24.3
CUX1-220ENST00000607092 MPRIPQ6WCQ1 1025 aa8.74□□□□□ -1.01
CUX1-220ENST00000607092 ATP10DQ9P241 1426 aa8.73□□□□□ -1.01
CUX1-220ENST00000607092 RRS1Q15050 365 aaKnown RBP8.73□□□□□ -1.01
CUX1-220ENST00000607092 IFFO2Q5TF58 517 aa8.73□□□□□ -1.01
CUX1-220ENST00000607092 YBX3P16989 372 aaKnown RBP eCLIP8.72□□□□□ -1.01
CUX1-220ENST00000607092 KCNQ4P56696 695 aa8.72□□□□□ -1.01
CUX1-220ENST00000607092 NKX1-1Q15270 411 aaPredicted RBP8.72□□□□□ -1.01
CUX1-220ENST00000607092 GGNBP2Q9H3C7 697 aa8.72□□□□□ -1.01
CUX1-220ENST00000607092 TMOD3Q9NYL9 352 aa8.72□□□□□ -1.01
CUX1-220ENST00000607092 C5P01031 1676 aa8.72□□□□□ -1.01
CUX1-220ENST00000607092 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.71□□□□□ -1.02
CUX1-220ENST00000607092 HSP90AB1P08238 724 aaKnown RBP8.71□□□□□ -1.02
CUX1-220ENST00000607092 HSPA6P17066 643 aa8.71□□□□□ -1.02
CUX1-220ENST00000607092 HSP90AB2PQ58FF8 381 aa8.71□□□□□ -1.02
CUX1-220ENST00000607092 MSL1Q68DK7 614 aa8.71□□□□□ -1.02
CUX1-220ENST00000607092 NLGN1Q8N2Q7 840 aa8.71□□□□□ -1.02
CUX1-220ENST00000607092 USHBP1Q8N6Y0 703 aa8.71□□□□□ -1.02
CUX1-220ENST00000607092 TIMELESSQ9UNS1 1208 aa8.71□□□□□ -1.02
CUX1-220ENST00000607092 SHANK3Q9BYB0 1731 aa8.71□□□□□ -1.02
CUX1-220ENST00000607092 TUBGCP6Q96RT7 1819 aa8.7□□□□□ -1.02
CUX1-220ENST00000607092 LOC102724428A0A0B4J2F2 783 aa8.7□□□□□ -1.02
CUX1-220ENST00000607092 CYP27B1O15528 508 aa8.7□□□□□ -1.02
CUX1-220ENST00000607092 SIK1P57059 783 aa8.7□□□□□ -1.02
CUX1-220ENST00000607092 IFNL2Q8IZJ0 200 aa8.7□□□□□ -1.02
CUX1-220ENST00000607092 IGSF1Q8N6C5 1336 aa8.7□□□□□ -1.02
CUX1-220ENST00000607092 ADCY9O60503 1353 aa8.7□□□□□ -1.02
CUX1-220ENST00000607092 TGFB2P61812 414 aa8.69□□□□□ -1.02
CUX1-220ENST00000607092 SAMD1Q6SPF0 538 aaPredicted RBP8.69□□□□□ -1.02
CUX1-220ENST00000607092 PIGBQ92521 554 aa8.69□□□□□ -1.02
CUX1-220ENST00000607092 U3KPZ7 1027 aaPredicted RBP8.69□□□□□ -1.02
CUX1-220ENST00000607092 WASHC2AQ641Q2 1341 aa8.69□□□□□ -1.02
CUX1-220ENST00000607092 NCAPD2Q15021 1401 aa8.69□□□□□ -1.02
CUX1-220ENST00000607092 C4BP0C0L5 1744 aa8.68□□□□□ -1.02
CUX1-220ENST00000607092 GNPATO15228 680 aa8.68□□□□□ -1.02
CUX1-220ENST00000607092 PHF14O94880 888 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms