RNA–Protein interactions for RNA: ENST00000606000.1

CTSA-210, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 644 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-210ENST00000606000 LRP5O75197 1615 aa16.92■□□□□ 0.3
CTSA-210ENST00000606000 PKD1L3Q7Z443 1732 aa16.91■□□□□ 0.3
CTSA-210ENST00000606000 NCAPD2Q15021 1401 aa16.9■□□□□ 0.3
CTSA-210ENST00000606000 PIAS4Q8N2W9 510 aaPredicted RBP16.9■□□□□ 0.3
CTSA-210ENST00000606000 WASHC2AQ641Q2 1341 aa16.9■□□□□ 0.3
CTSA-210ENST00000606000 NSD2O96028 1365 aa16.89■□□□□ 0.3
CTSA-210ENST00000606000 PLSCR1O15162 318 aa16.89■□□□□ 0.29
CTSA-210ENST00000606000 MSH5O43196 834 aa16.89■□□□□ 0.29
CTSA-210ENST00000606000 PROM2Q8N271 834 aa16.89■□□□□ 0.29
CTSA-210ENST00000606000 ZCRB1Q8TBF4 217 aaKnown RBP16.89■□□□□ 0.29
CTSA-210ENST00000606000 ANO8Q9HCE9 1232 aaPredicted RBP16.89■□□□□ 0.29
CTSA-210ENST00000606000 TOGARAM1Q9Y4F4 1720 aa16.89■□□□□ 0.29
CTSA-210ENST00000606000 RAPGEF4Q8WZA2 1011 aa16.87■□□□□ 0.29
CTSA-210ENST00000606000 PAPPAQ13219 1627 aa16.87■□□□□ 0.29
CTSA-210ENST00000606000 TATP17735 454 aaPredicted RBP16.86■□□□□ 0.29
CTSA-210ENST00000606000 EIF4A2Q14240 407 aaKnown RBP16.86■□□□□ 0.29
CTSA-210ENST00000606000 AMER1Q5JTC6 1135 aaPredicted RBP16.86■□□□□ 0.29
CTSA-210ENST00000606000 MORC1Q86VD1 984 aa16.86■□□□□ 0.29
CTSA-210ENST00000606000 EYA1Q99502 592 aa16.86■□□□□ 0.29
CTSA-210ENST00000606000 KNSTRNQ9Y448 316 aa16.86■□□□□ 0.29
CTSA-210ENST00000606000 CASZ1Q86V15 1759 aa16.86■□□□□ 0.29
CTSA-210ENST00000606000 ADRA2BP18089 450 aa16.85■□□□□ 0.29
CTSA-210ENST00000606000 TXNRD1Q16881 649 aa16.85■□□□□ 0.29
CTSA-210ENST00000606000 NBPF14Q5TI25 921 aa16.84■□□□□ 0.29
CTSA-210ENST00000606000 SYTL4Q96C24 671 aaPredicted RBP16.84■□□□□ 0.29
CTSA-210ENST00000606000 LY75O60449 1722 aa16.84■□□□□ 0.29
CTSA-210ENST00000606000 PRIM1P49642 420 aaKnown RBP16.83■□□□□ 0.28
CTSA-210ENST00000606000 KAT6BQ8WYB5 2073 aa16.83■□□□□ 0.28
CTSA-210ENST00000606000 PCDH11XQ9BZA7 1347 aa16.82■□□□□ 0.28
CTSA-210ENST00000606000 PCDH11YQ9BZA8 1340 aa16.82■□□□□ 0.28
CTSA-210ENST00000606000 PER1O15534 1290 aaPredicted RBP16.82■□□□□ 0.28
CTSA-210ENST00000606000 ITGB4P16144 1822 aa16.82■□□□□ 0.28
CTSA-210ENST00000606000 CYP27B1O15528 508 aa16.81■□□□□ 0.28
CTSA-210ENST00000606000 CNGB1Q14028 1251 aaPredicted RBP16.81■□□□□ 0.28
CTSA-210ENST00000606000 CC2D1BQ5T0F9 858 aaKnown RBP16.81■□□□□ 0.28
CTSA-210ENST00000606000 PDGFDQ9GZP0 370 aaPredicted RBP16.81■□□□□ 0.28
CTSA-210ENST00000606000 IGSF1Q8N6C5 1336 aa16.79■□□□□ 0.28
CTSA-210ENST00000606000 KCNQ4P56696 695 aa16.79■□□□□ 0.28
CTSA-210ENST00000606000 LRRC4BQ9NT99 713 aa16.79■□□□□ 0.28
CTSA-210ENST00000606000 TUBGCP6Q96RT7 1819 aa16.79■□□□□ 0.28
CTSA-210ENST00000606000 AEBP1Q8IUX7 1158 aa16.77■□□□□ 0.28
CTSA-210ENST00000606000 ZNF827Q17R98 1081 aa16.76■□□□□ 0.27
CTSA-210ENST00000606000 SLC15A2Q16348 729 aa16.75■□□□□ 0.27
CTSA-210ENST00000606000 STK32BQ9NY57 414 aa16.75■□□□□ 0.27
CTSA-210ENST00000606000 SRCAPQ6ZRS2 3230 aa16.74■□□□□ 0.27
CTSA-210ENST00000606000 MTHFSP49914 203 aa16.74■□□□□ 0.27
CTSA-210ENST00000606000 SPG7Q9UQ90 795 aa16.74■□□□□ 0.27
CTSA-210ENST00000606000 C5P01031 1676 aa16.74■□□□□ 0.27
CTSA-210ENST00000606000 QSER1Q2KHR3 1735 aa16.73■□□□□ 0.27
CTSA-210ENST00000606000 PHKG2P15735 406 aa16.73■□□□□ 0.27
CTSA-210ENST00000606000 IL13P35225 146 aa16.73■□□□□ 0.27
CTSA-210ENST00000606000 MPRIPQ6WCQ1 1025 aa16.73■□□□□ 0.27
CTSA-210ENST00000606000 COL3A1P02461 1466 aaPredicted RBP16.73■□□□□ 0.27
CTSA-210ENST00000606000 ZBTB7AO95365 584 aa16.72■□□□□ 0.27
CTSA-210ENST00000606000 NPC1L1Q9UHC9 1359 aa16.72■□□□□ 0.27
CTSA-210ENST00000606000 TAF1LQ8IZX4 1826 aa16.72■□□□□ 0.27
CTSA-210ENST00000606000 NKX1-1Q15270 411 aaPredicted RBP16.71■□□□□ 0.27
CTSA-210ENST00000606000 SULT6B1Q6IMI4 303 aa16.71■□□□□ 0.27
CTSA-210ENST00000606000 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.71■□□□□ 0.27
CTSA-210ENST00000606000 PALLDQ8WX93 1383 aa16.71■□□□□ 0.27
CTSA-210ENST00000606000 SLC27A3Q5K4L6 730 aa16.7■□□□□ 0.26
CTSA-210ENST00000606000 AKT1S1Q96B36 256 aa16.7■□□□□ 0.26
CTSA-210ENST00000606000 CCNL1Q9UK58 526 aaPredicted RBP16.7■□□□□ 0.26
CTSA-210ENST00000606000 KDM6AO15550 1401 aaPredicted RBP16.7■□□□□ 0.26
CTSA-210ENST00000606000 KDRP35968 1356 aa16.69■□□□□ 0.26
CTSA-210ENST00000606000 IFNL2Q8IZJ0 200 aa16.69■□□□□ 0.26
CTSA-210ENST00000606000 PIGBQ92521 554 aa16.69■□□□□ 0.26
CTSA-210ENST00000606000 SPON1Q9HCB6 807 aa16.69■□□□□ 0.26
CTSA-210ENST00000606000 ATF5Q9Y2D1 282 aaPredicted RBP16.68■□□□□ 0.26
CTSA-210ENST00000606000 PLEKHG2Q9H7P9 1386 aa16.67■□□□□ 0.26
CTSA-210ENST00000606000 HMOX1P09601 288 aa16.67■□□□□ 0.26
CTSA-210ENST00000606000 ZNF530Q6P9A1 599 aaPredicted RBP16.67■□□□□ 0.26
CTSA-210ENST00000606000 C4BP0C0L5 1744 aa16.67■□□□□ 0.26
CTSA-210ENST00000606000 VIRMAQ69YN4 1812 aaKnown RBP16.66■□□□□ 0.26
CTSA-210ENST00000606000 PLEKHO1Q53GL0 409 aaPredicted RBP16.66■□□□□ 0.26
CTSA-210ENST00000606000 PNPLA7Q6ZV29 1317 aa16.66■□□□□ 0.26
CTSA-210ENST00000606000 SCN11AQ9UI33 1791 aa16.65■□□□□ 0.26
CTSA-210ENST00000606000 PTGER2P43116 358 aa16.65■□□□□ 0.26
CTSA-210ENST00000606000 TMOD3Q9NYL9 352 aa16.65■□□□□ 0.26
CTSA-210ENST00000606000 DIAPH1O60610 1272 aaKnown RBP16.64■□□□□ 0.25
CTSA-210ENST00000606000 PPP1R1BQ9UD71 204 aaPredicted RBP16.64■□□□□ 0.25
CTSA-210ENST00000606000 ASAP1Q9ULH1 1129 aa16.64■□□□□ 0.25
CTSA-210ENST00000606000 COL24A1Q17RW2 1714 aa16.63■□□□□ 0.25
CTSA-210ENST00000606000 TFCP2L1Q9NZI6 479 aa16.63■□□□□ 0.25
CTSA-210ENST00000606000 AMOTQ4VCS5 1084 aa16.62■□□□□ 0.25
CTSA-210ENST00000606000 SGIP1Q9BQI5 828 aa16.62■□□□□ 0.25
CTSA-210ENST00000606000 MTFR1LQ9H019 292 aa16.62■□□□□ 0.25
CTSA-210ENST00000606000 ATG3Q9NT62 314 aa16.62■□□□□ 0.25
CTSA-210ENST00000606000 UBR3Q6ZT12 1888 aa16.62■□□□□ 0.25
CTSA-210ENST00000606000 SMIM5Q71RC9 77 aa16.61■□□□□ 0.25
CTSA-210ENST00000606000 AMIGO3Q86WK7 504 aa16.61■□□□□ 0.25
CTSA-210ENST00000606000 SMARCC1Q92922 1105 aaPredicted RBP16.61■□□□□ 0.25
CTSA-210ENST00000606000 DCAF5Q96JK2 942 aa16.61■□□□□ 0.25
CTSA-210ENST00000606000 U2SURPO15042 1029 aaKnown RBP16.6■□□□□ 0.25
CTSA-210ENST00000606000 PPP2R1AP30153 589 aa16.6■□□□□ 0.25
CTSA-210ENST00000606000 C1orf141Q5JVX7 400 aa16.6■□□□□ 0.25
CTSA-210ENST00000606000 ADAMTS7Q9UKP4 1686 aa16.59■□□□□ 0.25
CTSA-210ENST00000606000 COL5A3P25940 1745 aaPredicted RBP16.59■□□□□ 0.25
CTSA-210ENST00000606000 LOC102724428A0A0B4J2F2 783 aa16.59■□□□□ 0.25
CTSA-210ENST00000606000 HSP90AB1P08238 724 aaKnown RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms