RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, humanhuman

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-208ENST00000604743 BCL9O00512 1426 aa19.64■□□□□ 0.73
TUBE1-208ENST00000604743 SHANK3Q9BYB0 1731 aa19.64■□□□□ 0.73
TUBE1-208ENST00000604743 PSDA5PKW4 1024 aaPredicted RBP19.63■□□□□ 0.73
TUBE1-208ENST00000604743 EIF4A2Q14240 407 aaKnown RBP19.63■□□□□ 0.73
TUBE1-208ENST00000604743 EYA1Q99502 592 aa19.63■□□□□ 0.73
TUBE1-208ENST00000604743 NHSQ6T4R5 1651 aa19.62■□□□□ 0.73
TUBE1-208ENST00000604743 RREB1Q92766 1687 aa19.62■□□□□ 0.73
TUBE1-208ENST00000604743 PARD3Q8TEW0 1356 aa19.6■□□□□ 0.73
TUBE1-208ENST00000604743 NUP188Q5SRE5 1749 aa19.6■□□□□ 0.73
TUBE1-208ENST00000604743 PLSCR1O15162 318 aa19.59■□□□□ 0.73
TUBE1-208ENST00000604743 SYTL4Q96C24 671 aaPredicted RBP19.59■□□□□ 0.73
TUBE1-208ENST00000604743 BTAF1O14981 1849 aa19.59■□□□□ 0.73
TUBE1-208ENST00000604743 DOT1LQ8TEK3 1739 aa19.59■□□□□ 0.73
TUBE1-208ENST00000604743 R3HDM1Q15032 1099 aaKnown RBP19.58■□□□□ 0.72
TUBE1-208ENST00000604743 RGPD3A6NKT7 1758 aaPredicted RBP19.57■□□□□ 0.72
TUBE1-208ENST00000604743 RGPD4Q7Z3J3 1758 aa19.57■□□□□ 0.72
TUBE1-208ENST00000604743 MTHFSP49914 203 aa19.56■□□□□ 0.72
TUBE1-208ENST00000604743 NBPF14Q5TI25 921 aa19.56■□□□□ 0.72
TUBE1-208ENST00000604743 PCDH11XQ9BZA7 1347 aa19.55■□□□□ 0.72
TUBE1-208ENST00000604743 PCDH11YQ9BZA8 1340 aa19.55■□□□□ 0.72
TUBE1-208ENST00000604743 PRIM1P49642 420 aaKnown RBP19.55■□□□□ 0.72
TUBE1-208ENST00000604743 NCAPD2Q15021 1401 aa19.55■□□□□ 0.72
TUBE1-208ENST00000604743 PKD1L3Q7Z443 1732 aa19.54■□□□□ 0.72
TUBE1-208ENST00000604743 PROM2Q8N271 834 aa19.54■□□□□ 0.72
TUBE1-208ENST00000604743 SPG7Q9UQ90 795 aa19.54■□□□□ 0.72
TUBE1-208ENST00000604743 IGSF1Q8N6C5 1336 aa19.53■□□□□ 0.72
TUBE1-208ENST00000604743 CYP27B1O15528 508 aa19.53■□□□□ 0.72
TUBE1-208ENST00000604743 TXNRD1Q16881 649 aa19.53■□□□□ 0.72
TUBE1-208ENST00000604743 NPC1L1Q9UHC9 1359 aa19.53■□□□□ 0.72
TUBE1-208ENST00000604743 IL13P35225 146 aa19.51■□□□□ 0.71
TUBE1-208ENST00000604743 AEBP1Q8IUX7 1158 aa19.51■□□□□ 0.71
TUBE1-208ENST00000604743 ITGB4P16144 1822 aa19.49■□□□□ 0.71
TUBE1-208ENST00000604743 SULT6B1Q6IMI4 303 aa19.49■□□□□ 0.71
TUBE1-208ENST00000604743 DIAPH1O60610 1272 aaKnown RBP19.47■□□□□ 0.71
TUBE1-208ENST00000604743 MPRIPQ6WCQ1 1025 aa19.47■□□□□ 0.71
TUBE1-208ENST00000604743 IFNL2Q8IZJ0 200 aa19.47■□□□□ 0.71
TUBE1-208ENST00000604743 ANO8Q9HCE9 1232 aaPredicted RBP19.47■□□□□ 0.71
TUBE1-208ENST00000604743 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.47■□□□□ 0.71
TUBE1-208ENST00000604743 TOGARAM1Q9Y4F4 1720 aa19.47■□□□□ 0.71
TUBE1-208ENST00000604743 PLEKHO1Q53GL0 409 aaPredicted RBP19.46■□□□□ 0.71
TUBE1-208ENST00000604743 HMOX1P09601 288 aa19.45■□□□□ 0.7
TUBE1-208ENST00000604743 PHKG2P15735 406 aa19.45■□□□□ 0.7
TUBE1-208ENST00000604743 STK32BQ9NY57 414 aa19.45■□□□□ 0.7
TUBE1-208ENST00000604743 KCNQ4P56696 695 aa19.44■□□□□ 0.7
TUBE1-208ENST00000604743 SRCAPQ6ZRS2 3230 aa19.43■□□□□ 0.7
TUBE1-208ENST00000604743 ZEB1P37275 1124 aaPredicted RBP19.43■□□□□ 0.7
TUBE1-208ENST00000604743 NKX1-1Q15270 411 aaPredicted RBP19.43■□□□□ 0.7
TUBE1-208ENST00000604743 ZNF530Q6P9A1 599 aaPredicted RBP19.43■□□□□ 0.7
TUBE1-208ENST00000604743 LRRC4BQ9NT99 713 aa19.43■□□□□ 0.7
TUBE1-208ENST00000604743 LY75O60449 1722 aa19.42■□□□□ 0.7
TUBE1-208ENST00000604743 U2SURPO15042 1029 aaKnown RBP19.42■□□□□ 0.7
TUBE1-208ENST00000604743 PPP2R1AP30153 589 aa19.42■□□□□ 0.7
TUBE1-208ENST00000604743 DDX10Q13206 875 aaKnown RBP19.42■□□□□ 0.7
TUBE1-208ENST00000604743 AMOTQ4VCS5 1084 aa19.42■□□□□ 0.7
TUBE1-208ENST00000604743 SLC15A2Q16348 729 aa19.41■□□□□ 0.7
TUBE1-208ENST00000604743 KDRP35968 1356 aa19.41■□□□□ 0.7
TUBE1-208ENST00000604743 C1orf141Q5JVX7 400 aa19.4■□□□□ 0.7
TUBE1-208ENST00000604743 SLC27A3Q5K4L6 730 aa19.4■□□□□ 0.7
TUBE1-208ENST00000604743 PIGBQ92521 554 aa19.4■□□□□ 0.7
TUBE1-208ENST00000604743 CFAP53Q96M91 514 aa19.4■□□□□ 0.7
TUBE1-208ENST00000604743 CCNL1Q9UK58 526 aaPredicted RBP19.4■□□□□ 0.7
TUBE1-208ENST00000604743 COL3A1P02461 1466 aaPredicted RBP19.4■□□□□ 0.7
TUBE1-208ENST00000604743 TMOD3Q9NYL9 352 aa19.39■□□□□ 0.69
TUBE1-208ENST00000604743 PLEKHG2Q9H7P9 1386 aa19.39■□□□□ 0.69
TUBE1-208ENST00000604743 LRP5O75197 1615 aa19.38■□□□□ 0.69
TUBE1-208ENST00000604743 HSP90AB1P08238 724 aaKnown RBP19.38■□□□□ 0.69
TUBE1-208ENST00000604743 PAPPAQ13219 1627 aa19.38■□□□□ 0.69
TUBE1-208ENST00000604743 PDGFDQ9GZP0 370 aaPredicted RBP19.38■□□□□ 0.69
TUBE1-208ENST00000604743 PALLDQ8WX93 1383 aa19.37■□□□□ 0.69
TUBE1-208ENST00000604743 ZNF827Q17R98 1081 aa19.37■□□□□ 0.69
TUBE1-208ENST00000604743 DCAF5Q96JK2 942 aa19.36■□□□□ 0.69
TUBE1-208ENST00000604743 VIRMAQ69YN4 1812 aaKnown RBP19.35■□□□□ 0.69
TUBE1-208ENST00000604743 CASZ1Q86V15 1759 aa19.35■□□□□ 0.69
TUBE1-208ENST00000604743 SMARCC1Q92922 1105 aaPredicted RBP19.35■□□□□ 0.69
TUBE1-208ENST00000604743 ZBTB7AO95365 584 aa19.34■□□□□ 0.69
TUBE1-208ENST00000604743 ASAP1Q9ULH1 1129 aa19.34■□□□□ 0.69
TUBE1-208ENST00000604743 KDM6AO15550 1401 aaPredicted RBP19.34■□□□□ 0.69
TUBE1-208ENST00000604743 TAF1LQ8IZX4 1826 aa19.33■□□□□ 0.69
TUBE1-208ENST00000604743 TUBGCP6Q96RT7 1819 aa19.33■□□□□ 0.69
TUBE1-208ENST00000604743 ERVV-2B6SEH9 535 aa19.33■□□□□ 0.68
TUBE1-208ENST00000604743 CABP4P57796 275 aa19.33■□□□□ 0.68
TUBE1-208ENST00000604743 MTHFSDQ2M296 383 aaKnown RBP19.33■□□□□ 0.68
TUBE1-208ENST00000604743 AKT1S1Q96B36 256 aa19.33■□□□□ 0.68
TUBE1-208ENST00000604743 SPON1Q9HCB6 807 aa19.33■□□□□ 0.68
TUBE1-208ENST00000604743 NUDCQ9Y266 331 aa19.33■□□□□ 0.68
TUBE1-208ENST00000604743 SCN11AQ9UI33 1791 aa19.32■□□□□ 0.68
TUBE1-208ENST00000604743 AKAP4Q5JQC9 854 aa19.32■□□□□ 0.68
TUBE1-208ENST00000604743 TFCP2L1Q9NZI6 479 aa19.32■□□□□ 0.68
TUBE1-208ENST00000604743 ATF5Q9Y2D1 282 aaPredicted RBP19.32■□□□□ 0.68
TUBE1-208ENST00000604743 C5P01031 1676 aa19.32■□□□□ 0.68
TUBE1-208ENST00000604743 U2AF1L5P0DN76 240 aaPredicted RBP19.31■□□□□ 0.68
TUBE1-208ENST00000604743 U2AF1Q01081 240 aaKnown RBP eCLIP19.31■□□□□ 0.683e-6■□□□□ 10.4
TUBE1-208ENST00000604743 ATG3Q9NT62 314 aa19.31■□□□□ 0.68
TUBE1-208ENST00000604743 LOC102724428A0A0B4J2F2 783 aa19.29■□□□□ 0.68
TUBE1-208ENST00000604743 SIK1P57059 783 aa19.29■□□□□ 0.68
TUBE1-208ENST00000604743 NFATC2IPQ8NCF5 419 aa19.29■□□□□ 0.68
TUBE1-208ENST00000604743 LGR6Q9HBX8 967 aa19.29■□□□□ 0.68
TUBE1-208ENST00000604743 PPP1R1BQ9UD71 204 aaPredicted RBP19.29■□□□□ 0.68
TUBE1-208ENST00000604743 QSER1Q2KHR3 1735 aa19.28■□□□□ 0.68
TUBE1-208ENST00000604743 PRKAR2BP31323 418 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms