RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ARHGAP45Q92619 1136 aa12.59□□□□□ -0.39
LIG1-220ENST00000601091 A0A1W2PP64 1363 aa12.59□□□□□ -0.39
LIG1-220ENST00000601091 SSR1P43307 286 aaKnown RBP12.59□□□□□ -0.39
LIG1-220ENST00000601091 MCTP1Q6DN14 999 aa12.59□□□□□ -0.39
LIG1-220ENST00000601091 WASLO00401 505 aaPredicted RBP12.59□□□□□ -0.39
LIG1-220ENST00000601091 ZNF500O60304 480 aaPredicted RBP12.59□□□□□ -0.39
LIG1-220ENST00000601091 ANO2Q9NQ90 1003 aa12.59□□□□□ -0.39
LIG1-220ENST00000601091 ZBTB40Q9NUA8 1239 aa12.59□□□□□ -0.39
LIG1-220ENST00000601091 CDC42BPBQ9Y5S2 1711 aa12.58□□□□□ -0.39
LIG1-220ENST00000601091 DCTN1Q14203 1278 aa12.58□□□□□ -0.4
LIG1-220ENST00000601091 TMTC2Q8N394 836 aa12.58□□□□□ -0.4
LIG1-220ENST00000601091 GNAI3P08754 354 aa12.58□□□□□ -0.4
LIG1-220ENST00000601091 MMP14P50281 582 aa12.58□□□□□ -0.4
LIG1-220ENST00000601091 GAS2L2Q8NHY3 880 aa12.57□□□□□ -0.4
LIG1-220ENST00000601091 GOLGA6L4A6NEF3 574 aa12.57□□□□□ -0.4
LIG1-220ENST00000601091 KIF20AO95235 890 aa12.57□□□□□ -0.4
LIG1-220ENST00000601091 PSEN1P49768 467 aa12.57□□□□□ -0.4
LIG1-220ENST00000601091 POLKQ9UBT6 870 aa12.57□□□□□ -0.4
LIG1-220ENST00000601091 LOC102724159A0A0B4J2E5 919 aa12.57□□□□□ -0.4
LIG1-220ENST00000601091 PWP2Q15269 919 aaKnown RBP12.57□□□□□ -0.4
LIG1-220ENST00000601091 GPATCH3Q96I76 525 aa12.57□□□□□ -0.4
LIG1-220ENST00000601091 MBIPQ9NS73 344 aa12.57□□□□□ -0.4
LIG1-220ENST00000601091 MYOM2P54296 1465 aa12.57□□□□□ -0.4
LIG1-220ENST00000601091 GRPEL1Q9HAV7 217 aa12.56□□□□□ -0.4
LIG1-220ENST00000601091 TRIM35Q9UPQ4 493 aa12.56□□□□□ -0.4
LIG1-220ENST00000601091 MTMR7Q9Y216 660 aa12.56□□□□□ -0.4
LIG1-220ENST00000601091 NLRP6P59044 892 aa12.56□□□□□ -0.4
LIG1-220ENST00000601091 GNAI2P04899 355 aa12.56□□□□□ -0.4
LIG1-220ENST00000601091 CCT4P50991 539 aaKnown RBP12.56□□□□□ -0.4
LIG1-220ENST00000601091 DMTNQ08495 405 aa12.56□□□□□ -0.4
LIG1-220ENST00000601091 CCDC30Q5VVM6 783 aa12.56□□□□□ -0.4
LIG1-220ENST00000601091 ZNF771Q7L3S4 317 aaPredicted RBP12.56□□□□□ -0.4
LIG1-220ENST00000601091 EIF2S2P20042 333 aaKnown RBP12.55□□□□□ -0.4
LIG1-220ENST00000601091 NPATQ14207 1427 aa12.55□□□□□ -0.4
LIG1-220ENST00000601091 IRF6O14896 467 aa12.55□□□□□ -0.4
LIG1-220ENST00000601091 CARD10Q9BWT7 1032 aa12.55□□□□□ -0.4
LIG1-220ENST00000601091 NASPP49321 788 aaPredicted RBP12.55□□□□□ -0.4
LIG1-220ENST00000601091 NEK4P51957 841 aa12.55□□□□□ -0.4
LIG1-220ENST00000601091 TEFQ10587 303 aa12.55□□□□□ -0.4
LIG1-220ENST00000601091 USP19O94966 1318 aa12.55□□□□□ -0.4
LIG1-220ENST00000601091 VAMP4O75379 141 aa12.54□□□□□ -0.4
LIG1-220ENST00000601091 CLCN1P35523 988 aa12.54□□□□□ -0.4
LIG1-220ENST00000601091 TBC1D9Q6ZT07 1266 aa12.54□□□□□ -0.4
LIG1-220ENST00000601091 TRIM34Q9BYJ4 488 aa12.54□□□□□ -0.4
LIG1-220ENST00000601091 ERC2O15083 957 aa12.54□□□□□ -0.4
LIG1-220ENST00000601091 MCM10Q7L590 875 aa12.54□□□□□ -0.4
LIG1-220ENST00000601091 UGGT1Q9NYU2 1555 aa12.54□□□□□ -0.4
LIG1-220ENST00000601091 UBTFL1P0CB47 393 aaPredicted RBP12.54□□□□□ -0.4
LIG1-220ENST00000601091 MRPL50Q8N5N7 158 aaKnown RBP12.54□□□□□ -0.4
LIG1-220ENST00000601091 MCM2P49736 904 aa12.53□□□□□ -0.4
LIG1-220ENST00000601091 UTP14CQ5TAP6 766 aaKnown RBP12.53□□□□□ -0.4
LIG1-220ENST00000601091 PIAS4Q8N2W9 510 aaPredicted RBP12.53□□□□□ -0.4
LIG1-220ENST00000601091 TNPO1Q92973 898 aaKnown RBP12.53□□□□□ -0.4
LIG1-220ENST00000601091 LAMC1P11047 1609 aa12.53□□□□□ -0.4
LIG1-220ENST00000601091 CFAP65Q6ZU64 1925 aaKnown RBP12.53□□□□□ -0.4
LIG1-220ENST00000601091 FAM83GA6ND36 823 aa12.53□□□□□ -0.4
LIG1-220ENST00000601091 ESPNB1AK53 854 aa12.53□□□□□ -0.4
LIG1-220ENST00000601091 KIAA2012Q0VF49 1180 aa12.53□□□□□ -0.4
LIG1-220ENST00000601091 PHACTR3Q96KR7 559 aa12.53□□□□□ -0.4
LIG1-220ENST00000601091 ERCC6L2Q5T890 1561 aa12.52□□□□□ -0.4
LIG1-220ENST00000601091 MAFGO15525 162 aa12.52□□□□□ -0.4
LIG1-220ENST00000601091 CAVIN1Q6NZI2 390 aaKnown RBP12.52□□□□□ -0.4
LIG1-220ENST00000601091 LETM1O95202 739 aaPredicted RBP12.52□□□□□ -0.41
LIG1-220ENST00000601091 CSPP1Q1MSJ5 1256 aa12.52□□□□□ -0.41
LIG1-220ENST00000601091 TSPYL6Q8N831 410 aa12.52□□□□□ -0.41
LIG1-220ENST00000601091 SNX21Q969T3 373 aa12.52□□□□□ -0.41
LIG1-220ENST00000601091 ZFYVE16Q7Z3T8 1539 aa12.52□□□□□ -0.41
LIG1-220ENST00000601091 ZCCHC11Q5TAX3 1644 aaKnown RBP12.52□□□□□ -0.41
LIG1-220ENST00000601091 MPHOSPH10O00566 681 aaKnown RBP12.51□□□□□ -0.41
LIG1-220ENST00000601091 ATP6V1DQ9Y5K8 247 aa12.51□□□□□ -0.41
LIG1-220ENST00000601091 MRVI1Q9Y6F6 885 aa12.51□□□□□ -0.41
LIG1-220ENST00000601091 YTHDC2Q9H6S0 1430 aaKnown RBP12.51□□□□□ -0.41
LIG1-220ENST00000601091 PRPF40AO75400 957 aaKnown RBP12.51□□□□□ -0.41
LIG1-220ENST00000601091 NUTM2GQ5VZR2 741 aa12.51□□□□□ -0.41
LIG1-220ENST00000601091 RUFY2Q8WXA3 655 aa12.51□□□□□ -0.41
LIG1-220ENST00000601091 LRRCC1Q9C099 1032 aa12.51□□□□□ -0.41
LIG1-220ENST00000601091 DIAPH3Q9NSV4 1193 aa12.51□□□□□ -0.41
LIG1-220ENST00000601091 CHD1O14646 1710 aa12.51□□□□□ -0.41
LIG1-220ENST00000601091 HSP90AB4PQ58FF6 505 aa12.51□□□□□ -0.41
LIG1-220ENST00000601091 C8orf58Q8NAV2 365 aa12.51□□□□□ -0.41
LIG1-220ENST00000601091 C9orf78Q9NZ63 289 aaPredicted RBP12.51□□□□□ -0.41
LIG1-220ENST00000601091 ZMYM3Q14202 1370 aa12.5□□□□□ -0.41
LIG1-220ENST00000601091 SLC26A8Q96RN1 970 aa12.5□□□□□ -0.41
LIG1-220ENST00000601091 MIS18AQ9NYP9 233 aa12.5□□□□□ -0.41
LIG1-220ENST00000601091 ZFYVE9O95405 1425 aa12.5□□□□□ -0.41
LIG1-220ENST00000601091 TET3O43151 1660 aa12.5□□□□□ -0.41
LIG1-220ENST00000601091 TTC36A6NLP5 189 aa12.5□□□□□ -0.41
LIG1-220ENST00000601091 ZBTB7BO15156 539 aaPredicted RBP12.5□□□□□ -0.41
LIG1-220ENST00000601091 SURF6O75683 361 aaKnown RBP12.5□□□□□ -0.41
LIG1-220ENST00000601091 CLTCL1P53675 1640 aa12.5□□□□□ -0.41
LIG1-220ENST00000601091 ZRSR1Q15695 479 aaKnown RBP12.49□□□□□ -0.41
LIG1-220ENST00000601091 C1orf141Q5JVX7 400 aa12.49□□□□□ -0.41
LIG1-220ENST00000601091 MADDQ8WXG6 1647 aa12.49□□□□□ -0.41
LIG1-220ENST00000601091 SMARCA5O60264 1052 aaPredicted RBP12.49□□□□□ -0.41
LIG1-220ENST00000601091 MAP2K1Q02750 393 aaPredicted RBP12.49□□□□□ -0.41
LIG1-220ENST00000601091 RBM42Q9BTD8 480 aaKnown RBP12.49□□□□□ -0.41
LIG1-220ENST00000601091 PTPRCP08575 1304 aa12.49□□□□□ -0.41
LIG1-220ENST00000601091 POGZQ7Z3K3 1410 aa12.49□□□□□ -0.41
LIG1-220ENST00000601091 ABTB2Q8N961 1025 aa12.48□□□□□ -0.41
LIG1-220ENST00000601091 MBD3O95983 291 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 200.7 ms