RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 FHDC1Q9C0D6 1143 aaPredicted RBP17.42■□□□□ 0.38
UPF1-208ENST00000600012 SHANK3Q9BYB0 1731 aa17.41■□□□□ 0.38
UPF1-208ENST00000600012 AMPHP49418 695 aa17.41■□□□□ 0.38
UPF1-208ENST00000600012 SLC27A3Q5K4L6 730 aa17.41■□□□□ 0.38
UPF1-208ENST00000600012 SYT17Q9BSW7 474 aa17.41■□□□□ 0.38
UPF1-208ENST00000600012 LRRC4BQ9NT99 713 aa17.41■□□□□ 0.38
UPF1-208ENST00000600012 RTL1A6NKG5 1358 aa17.4■□□□□ 0.38
UPF1-208ENST00000600012 ZNF827Q17R98 1081 aa17.4■□□□□ 0.38
UPF1-208ENST00000600012 CHD4Q14839 1912 aa17.4■□□□□ 0.38
UPF1-208ENST00000600012 LY75O60449 1722 aa17.39■□□□□ 0.37
UPF1-208ENST00000600012 MAP3K5Q99683 1374 aa17.39■□□□□ 0.37
UPF1-208ENST00000600012 ARXQ96QS3 562 aa17.38■□□□□ 0.37
UPF1-208ENST00000600012 KIF20BQ96Q89 1820 aa17.37■□□□□ 0.37
UPF1-208ENST00000600012 TUBGCP6Q96RT7 1819 aa17.37■□□□□ 0.37
UPF1-208ENST00000600012 MEGF6O75095 1541 aa17.37■□□□□ 0.37
UPF1-208ENST00000600012 FBLN1P23142 703 aa17.37■□□□□ 0.37
UPF1-208ENST00000600012 ZCRB1Q8TBF4 217 aaKnown RBP17.37■□□□□ 0.37
UPF1-208ENST00000600012 AKT1S1Q96B36 256 aa17.37■□□□□ 0.37
UPF1-208ENST00000600012 COL24A1Q17RW2 1714 aa17.36■□□□□ 0.37
UPF1-208ENST00000600012 PRIM1P49642 420 aaKnown RBP17.36■□□□□ 0.37
UPF1-208ENST00000600012 SLC16A10Q8TF71 515 aa17.36■□□□□ 0.37
UPF1-208ENST00000600012 SYTL4Q96C24 671 aaPredicted RBP17.36■□□□□ 0.37
UPF1-208ENST00000600012 SMG6Q86US8 1419 aaKnown RBP17.36■□□□□ 0.37
UPF1-208ENST00000600012 FYB1O15117 783 aa17.35■□□□□ 0.37
UPF1-208ENST00000600012 CGNL1Q0VF96 1302 aa17.35■□□□□ 0.37
UPF1-208ENST00000600012 NSD2O96028 1365 aa17.34■□□□□ 0.37
UPF1-208ENST00000600012 RRS1Q15050 365 aaKnown RBP17.34■□□□□ 0.37
UPF1-208ENST00000600012 GGNBP2Q9H3C7 697 aa17.34■□□□□ 0.37
UPF1-208ENST00000600012 PNPLA7Q6ZV29 1317 aa17.33■□□□□ 0.36
UPF1-208ENST00000600012 CDCA8Q53HL2 280 aa17.33■□□□□ 0.36
UPF1-208ENST00000600012 NBPF6Q5VWK0 638 aa17.32■□□□□ 0.36
UPF1-208ENST00000600012 RAPGEF4Q8WZA2 1011 aa17.32■□□□□ 0.36
UPF1-208ENST00000600012 NBPF4Q96M43 638 aa17.32■□□□□ 0.36
UPF1-208ENST00000600012 TFCP2L1Q9NZI6 479 aa17.32■□□□□ 0.36
UPF1-208ENST00000600012 INSRP06213 1382 aa17.31■□□□□ 0.36
UPF1-208ENST00000600012 KIF24Q5T7B8 1368 aa17.31■□□□□ 0.36
UPF1-208ENST00000600012 POLD1P28340 1107 aa17.31■□□□□ 0.36
UPF1-208ENST00000600012 FLT4P35916 1363 aa17.3■□□□□ 0.36
UPF1-208ENST00000600012 KCNQ4P56696 695 aa17.3■□□□□ 0.36
UPF1-208ENST00000600012 ZNF784Q8NCA9 323 aaPredicted RBP17.3■□□□□ 0.36
UPF1-208ENST00000600012 CCNL1Q9UK58 526 aaPredicted RBP17.3■□□□□ 0.36
UPF1-208ENST00000600012 TATP17735 454 aaPredicted RBP17.29■□□□□ 0.36
UPF1-208ENST00000600012 USHBP1Q8N6Y0 703 aa17.29■□□□□ 0.36
UPF1-208ENST00000600012 PCDH11XQ9BZA7 1347 aa17.28■□□□□ 0.36
UPF1-208ENST00000600012 PCDH11YQ9BZA8 1340 aa17.28■□□□□ 0.36
UPF1-208ENST00000600012 C5P01031 1676 aa17.27■□□□□ 0.36
UPF1-208ENST00000600012 HSP90AB2PQ58FF8 381 aa17.27■□□□□ 0.36
UPF1-208ENST00000600012 KLHL34Q8N239 644 aa17.27■□□□□ 0.36
UPF1-208ENST00000600012 GPR162Q16538 588 aa17.26■□□□□ 0.35
UPF1-208ENST00000600012 MIER1Q8N108 512 aa17.26■□□□□ 0.35
UPF1-208ENST00000600012 PKD1L3Q7Z443 1732 aa17.26■□□□□ 0.35
UPF1-208ENST00000600012 TAF1LQ8IZX4 1826 aa17.26■□□□□ 0.35
UPF1-208ENST00000600012 UTRNP46939 3433 aa17.25■□□□□ 0.35
UPF1-208ENST00000600012 ANKRD26Q9UPS8 1709 aa17.25■□□□□ 0.35
UPF1-208ENST00000600012 HMGB2P26583 209 aaKnown RBP17.25■□□□□ 0.35
UPF1-208ENST00000600012 ITGB4P16144 1822 aa17.25■□□□□ 0.35
UPF1-208ENST00000600012 NSD3Q9BZ95 1437 aa17.24■□□□□ 0.35
UPF1-208ENST00000600012 PANK3Q9H999 370 aa17.24■□□□□ 0.35
UPF1-208ENST00000600012 CARD14Q9BXL6 1004 aa17.23■□□□□ 0.35
UPF1-208ENST00000600012 TOGARAM1Q9Y4F4 1720 aa17.23■□□□□ 0.35
UPF1-208ENST00000600012 NCAPD2Q15021 1401 aa17.22■□□□□ 0.35
UPF1-208ENST00000600012 MAP2P11137 1827 aaKnown RBP17.22■□□□□ 0.35
UPF1-208ENST00000600012 MSH5O43196 834 aa17.22■□□□□ 0.35
UPF1-208ENST00000600012 COL23A1Q86Y22 540 aaPredicted RBP17.22■□□□□ 0.35
UPF1-208ENST00000600012 PALLDQ8WX93 1383 aa17.22■□□□□ 0.35
UPF1-208ENST00000600012 CYP27B1O15528 508 aa17.21■□□□□ 0.35
UPF1-208ENST00000600012 EMILIN1Q9Y6C2 1016 aa17.21■□□□□ 0.35
UPF1-208ENST00000600012 ANP32CO43423 234 aa17.2■□□□□ 0.34
UPF1-208ENST00000600012 MPRIPQ6WCQ1 1025 aa17.2■□□□□ 0.34
UPF1-208ENST00000600012 PELP1Q8IZL8 1130 aaKnown RBP17.2■□□□□ 0.34
UPF1-208ENST00000600012 FLAD1Q8NFF5 587 aa17.2■□□□□ 0.34
UPF1-208ENST00000600012 NLGN2Q8NFZ4 835 aa17.2■□□□□ 0.34
UPF1-208ENST00000600012 C4BP0C0L5 1744 aa17.19■□□□□ 0.34
UPF1-208ENST00000600012 CNGB1Q14028 1251 aaPredicted RBP17.19■□□□□ 0.34
UPF1-208ENST00000600012 SMARCC1Q92922 1105 aaPredicted RBP17.19■□□□□ 0.34
UPF1-208ENST00000600012 PER1O15534 1290 aaPredicted RBP17.18■□□□□ 0.34
UPF1-208ENST00000600012 PPM1GO15355 546 aaPredicted RBP17.17■□□□□ 0.34
UPF1-208ENST00000600012 MSL1Q68DK7 614 aa17.17■□□□□ 0.34
UPF1-208ENST00000600012 UBR3Q6ZT12 1888 aa17.17■□□□□ 0.34
UPF1-208ENST00000600012 SPG7Q9UQ90 795 aa17.17■□□□□ 0.34
UPF1-208ENST00000600012 NKX1-1Q15270 411 aaPredicted RBP17.16■□□□□ 0.34
UPF1-208ENST00000600012 GRIN3BO60391 1043 aa17.15■□□□□ 0.34
UPF1-208ENST00000600012 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.15■□□□□ 0.34
UPF1-208ENST00000600012 C1QTNF8P60827 252 aa17.14■□□□□ 0.33
UPF1-208ENST00000600012 PIGBQ92521 554 aa17.14■□□□□ 0.33
UPF1-208ENST00000600012 AK7Q96M32 723 aa17.14■□□□□ 0.33
UPF1-208ENST00000600012 EYA1Q99502 592 aa17.14■□□□□ 0.33
UPF1-208ENST00000600012 YBX3P16989 372 aaKnown RBP eCLIP17.13■□□□□ 0.33
UPF1-208ENST00000600012 PRKRIP1Q9H875 184 aaPredicted RBP17.13■□□□□ 0.33
UPF1-208ENST00000600012 KNSTRNQ9Y448 316 aa17.13■□□□□ 0.33
UPF1-208ENST00000600012 CD2APQ9Y5K6 639 aa17.13■□□□□ 0.33
UPF1-208ENST00000600012 POLKQ9UBT6 870 aa17.12■□□□□ 0.33
UPF1-208ENST00000600012 PLEKHG2Q9H7P9 1386 aa17.12■□□□□ 0.33
UPF1-208ENST00000600012 CC2D1BQ5T0F9 858 aaKnown RBP17.11■□□□□ 0.33
UPF1-208ENST00000600012 TMOD3Q9NYL9 352 aa17.11■□□□□ 0.33
UPF1-208ENST00000600012 GOLGB1Q14789 3259 aaKnown RBP17.1■□□□□ 0.33
UPF1-208ENST00000600012 SENP3-EIF4A1A0A087X0R7 540 aa17.1■□□□□ 0.33
UPF1-208ENST00000600012 LOC102724428A0A0B4J2F2 783 aa17.1■□□□□ 0.33
UPF1-208ENST00000600012 GIGYF1O75420 1035 aaPredicted RBP17.1■□□□□ 0.33
UPF1-208ENST00000600012 SIK1P57059 783 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms