RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 LRRC4BQ9NT99 713 aa18.9■□□□□ 0.62
TRIM28-211ENST00000597968 MAP3K5Q99683 1374 aa18.9■□□□□ 0.62
TRIM28-211ENST00000597968 MEGF6O75095 1541 aa18.9■□□□□ 0.62
TRIM28-211ENST00000597968 TATP17735 454 aaPredicted RBP18.89■□□□□ 0.61
TRIM28-211ENST00000597968 FBLN1P23142 703 aa18.89■□□□□ 0.61
TRIM28-211ENST00000597968 AKT1S1Q96B36 256 aa18.89■□□□□ 0.61
TRIM28-211ENST00000597968 NSD2O96028 1365 aa18.89■□□□□ 0.61
TRIM28-211ENST00000597968 PRIM1P49642 420 aaKnown RBP18.88■□□□□ 0.61
TRIM28-211ENST00000597968 PCGF6Q9BYE7 350 aa18.88■□□□□ 0.61
TRIM28-211ENST00000597968 ATF5Q9Y2D1 282 aaPredicted RBP18.88■□□□□ 0.61
TRIM28-211ENST00000597968 PCDH11XQ9BZA7 1347 aa18.88■□□□□ 0.61
TRIM28-211ENST00000597968 PCDH11YQ9BZA8 1340 aa18.88■□□□□ 0.61
TRIM28-211ENST00000597968 KIF20BQ96Q89 1820 aa18.88■□□□□ 0.61
TRIM28-211ENST00000597968 YY1P25490 414 aa18.87■□□□□ 0.61
TRIM28-211ENST00000597968 HSP90AB2PQ58FF8 381 aa18.87■□□□□ 0.61
TRIM28-211ENST00000597968 SYTL4Q96C24 671 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-211ENST00000597968 CARD14Q9BXL6 1004 aa18.87■□□□□ 0.61
TRIM28-211ENST00000597968 QSER1Q2KHR3 1735 aa18.86■□□□□ 0.61
TRIM28-211ENST00000597968 NSD3Q9BZ95 1437 aa18.86■□□□□ 0.61
TRIM28-211ENST00000597968 PLEKHG2Q9H7P9 1386 aa18.86■□□□□ 0.61
TRIM28-211ENST00000597968 ZNF827Q17R98 1081 aa18.86■□□□□ 0.61
TRIM28-211ENST00000597968 SYT17Q9BSW7 474 aa18.86■□□□□ 0.61
TRIM28-211ENST00000597968 ARXQ96QS3 562 aa18.85■□□□□ 0.61
TRIM28-211ENST00000597968 SHANK3Q9BYB0 1731 aa18.85■□□□□ 0.61
TRIM28-211ENST00000597968 MYOM1P52179 1685 aa18.85■□□□□ 0.61
TRIM28-211ENST00000597968 NCAPD2Q15021 1401 aa18.84■□□□□ 0.61
TRIM28-211ENST00000597968 WASHC2AQ641Q2 1341 aa18.84■□□□□ 0.61
TRIM28-211ENST00000597968 FHDC1Q9C0D6 1143 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-211ENST00000597968 LY75O60449 1722 aa18.83■□□□□ 0.61
TRIM28-211ENST00000597968 DOT1LQ8TEK3 1739 aa18.83■□□□□ 0.61
TRIM28-211ENST00000597968 UTRNP46939 3433 aa18.83■□□□□ 0.61
TRIM28-211ENST00000597968 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.82■□□□□ 0.6
TRIM28-211ENST00000597968 TFCP2L1Q9NZI6 479 aa18.82■□□□□ 0.6
TRIM28-211ENST00000597968 RGPD2P0DJD1 1756 aa18.82■□□□□ 0.6
TRIM28-211ENST00000597968 POLD1P28340 1107 aa18.81■□□□□ 0.6
TRIM28-211ENST00000597968 CCNL1Q9UK58 526 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-211ENST00000597968 ANKRD26Q9UPS8 1709 aa18.8■□□□□ 0.6
TRIM28-211ENST00000597968 PNPLA7Q6ZV29 1317 aa18.8■□□□□ 0.6
TRIM28-211ENST00000597968 KAT6BQ8WYB5 2073 aa18.8■□□□□ 0.6
TRIM28-211ENST00000597968 EIF4G2P78344 907 aaKnown RBP eCLIP18.8■□□□□ 0.6
TRIM28-211ENST00000597968 USHBP1Q8N6Y0 703 aa18.8■□□□□ 0.6
TRIM28-211ENST00000597968 EMILIN1Q9Y6C2 1016 aa18.8■□□□□ 0.6
TRIM28-211ENST00000597968 NKX1-1Q15270 411 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-211ENST00000597968 FLAD1Q8NFF5 587 aa18.79■□□□□ 0.6
TRIM28-211ENST00000597968 SMARCC1Q92922 1105 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-211ENST00000597968 SPG7Q9UQ90 795 aa18.79■□□□□ 0.6
TRIM28-211ENST00000597968 COL24A1Q17RW2 1714 aa18.79■□□□□ 0.6
TRIM28-211ENST00000597968 CYP27B1O15528 508 aa18.77■□□□□ 0.6
TRIM28-211ENST00000597968 POLKQ9UBT6 870 aa18.76■□□□□ 0.59
TRIM28-211ENST00000597968 PKD1L3Q7Z443 1732 aa18.76■□□□□ 0.59
TRIM28-211ENST00000597968 PALLDQ8WX93 1383 aa18.74■□□□□ 0.59
TRIM28-211ENST00000597968 PPM1GO15355 546 aaPredicted RBP18.74■□□□□ 0.59
TRIM28-211ENST00000597968 EYA1Q99502 592 aa18.73■□□□□ 0.59
TRIM28-211ENST00000597968 MPRIPQ6WCQ1 1025 aa18.72■□□□□ 0.59
TRIM28-211ENST00000597968 IFNL2Q8IZJ0 200 aa18.72■□□□□ 0.59
TRIM28-211ENST00000597968 KCNQ4P56696 695 aa18.71■□□□□ 0.59
TRIM28-211ENST00000597968 HSPA5P11021 654 aaKnown RBP18.7■□□□□ 0.58
TRIM28-211ENST00000597968 COL23A1Q86Y22 540 aaPredicted RBP18.7■□□□□ 0.58
TRIM28-211ENST00000597968 MAP2P11137 1827 aaKnown RBP18.7■□□□□ 0.58
TRIM28-211ENST00000597968 C5P01031 1676 aa18.69■□□□□ 0.58
TRIM28-211ENST00000597968 GOLGB1Q14789 3259 aaKnown RBP18.68■□□□□ 0.58
TRIM28-211ENST00000597968 TUBGCP6Q96RT7 1819 aa18.68■□□□□ 0.58
TRIM28-211ENST00000597968 HSP90AB1P08238 724 aaKnown RBP18.68■□□□□ 0.58
TRIM28-211ENST00000597968 PHKG2P15735 406 aa18.68■□□□□ 0.58
TRIM28-211ENST00000597968 EIF4A2Q14240 407 aaKnown RBP18.68■□□□□ 0.58
TRIM28-211ENST00000597968 CCER1Q8TC90 406 aaPredicted RBP18.68■□□□□ 0.58
TRIM28-211ENST00000597968 PIGBQ92521 554 aa18.68■□□□□ 0.58
TRIM28-211ENST00000597968 PANK3Q9H999 370 aa18.68■□□□□ 0.58
TRIM28-211ENST00000597968 IGSF1Q8N6C5 1336 aa18.68■□□□□ 0.58
TRIM28-211ENST00000597968 GPR162Q16538 588 aa18.67■□□□□ 0.58
TRIM28-211ENST00000597968 POLR3GLQ9BT43 218 aa18.67■□□□□ 0.58
TRIM28-211ENST00000597968 TMOD3Q9NYL9 352 aa18.67■□□□□ 0.58
TRIM28-211ENST00000597968 TOGARAM1Q9Y4F4 1720 aa18.66■□□□□ 0.58
TRIM28-211ENST00000597968 AK7Q96M32 723 aa18.66■□□□□ 0.58
TRIM28-211ENST00000597968 ERVV-2B6SEH9 535 aa18.65■□□□□ 0.58
TRIM28-211ENST00000597968 MSH5O43196 834 aa18.65■□□□□ 0.58
TRIM28-211ENST00000597968 SSFA2P28290 1259 aa18.65■□□□□ 0.58
TRIM28-211ENST00000597968 AMOTQ4VCS5 1084 aa18.65■□□□□ 0.58
TRIM28-211ENST00000597968 CD2APQ9Y5K6 639 aa18.65■□□□□ 0.58
TRIM28-211ENST00000597968 ITGB4P16144 1822 aa18.65■□□□□ 0.58
TRIM28-211ENST00000597968 C4BP0C0L5 1744 aa18.64■□□□□ 0.57
TRIM28-211ENST00000597968 LOC102724428A0A0B4J2F2 783 aa18.64■□□□□ 0.57
TRIM28-211ENST00000597968 GRIN3BO60391 1043 aa18.64■□□□□ 0.57
TRIM28-211ENST00000597968 SIK1P57059 783 aa18.64■□□□□ 0.57
TRIM28-211ENST00000597968 ZNF784Q8NCA9 323 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-211ENST00000597968 TAF1LQ8IZX4 1826 aa18.64■□□□□ 0.57
TRIM28-211ENST00000597968 CHD4Q14839 1912 aa18.64■□□□□ 0.57
TRIM28-211ENST00000597968 DCAF5Q96JK2 942 aa18.63■□□□□ 0.57
TRIM28-211ENST00000597968 KNSTRNQ9Y448 316 aa18.63■□□□□ 0.57
TRIM28-211ENST00000597968 TNNT2P45379 298 aaPredicted RBP18.62■□□□□ 0.57
TRIM28-211ENST00000597968 PLEKHO1Q53GL0 409 aaPredicted RBP18.62■□□□□ 0.57
TRIM28-211ENST00000597968 MORC1Q86VD1 984 aa18.62■□□□□ 0.57
TRIM28-211ENST00000597968 KLHL34Q8N239 644 aa18.61■□□□□ 0.57
TRIM28-211ENST00000597968 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.59■□□□□ 0.57
TRIM28-211ENST00000597968 NLGN2Q8NFZ4 835 aa18.59■□□□□ 0.57
TRIM28-211ENST00000597968 ZNF831Q5JPB2 1677 aa18.59■□□□□ 0.57
TRIM28-211ENST00000597968 KDRP35968 1356 aa18.58■□□□□ 0.57
TRIM28-211ENST00000597968 ATP6V1AP38606 617 aa18.58■□□□□ 0.56
TRIM28-211ENST00000597968 ATG3Q9NT62 314 aa18.58■□□□□ 0.56
TRIM28-211ENST00000597968 ASAP1Q9ULH1 1129 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms