RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 FAM135BQ49AJ0 1406 aa18.73■□□□□ 0.59
UPF1-204ENST00000596842 RTF1Q92541 710 aaKnown RBP18.73■□□□□ 0.59
UPF1-204ENST00000596842 USP26Q9BXU7 913 aa18.72■□□□□ 0.59
UPF1-204ENST00000596842 MLH3Q9UHC1 1453 aa18.72■□□□□ 0.59
UPF1-204ENST00000596842 NEURL4Q96JN8 1562 aa18.72■□□□□ 0.59
UPF1-204ENST00000596842 PNPLA6Q8IY17 1366 aa18.72■□□□□ 0.59
UPF1-204ENST00000596842 CEP85Q6P2H3 762 aa18.72■□□□□ 0.59
UPF1-204ENST00000596842 G2E3Q7L622 706 aa18.72■□□□□ 0.59
UPF1-204ENST00000596842 LTV1Q96GA3 475 aaPredicted RBP18.72■□□□□ 0.59
UPF1-204ENST00000596842 DTNBO60941 627 aa18.71■□□□□ 0.59
UPF1-204ENST00000596842 NUTM2GQ5VZR2 741 aa18.71■□□□□ 0.59
UPF1-204ENST00000596842 TSPYL4Q9UJ04 414 aa18.71■□□□□ 0.59
UPF1-204ENST00000596842 CCDC61Q9Y6R9 512 aa18.71■□□□□ 0.59
UPF1-204ENST00000596842 PTPRMP28827 1452 aa18.71■□□□□ 0.59
UPF1-204ENST00000596842 ANO2Q9NQ90 1003 aa18.71■□□□□ 0.59
UPF1-204ENST00000596842 PRDM10Q9NQV6 1147 aa18.71■□□□□ 0.59
UPF1-204ENST00000596842 EIF4A2Q14240 407 aaKnown RBP18.7■□□□□ 0.58
UPF1-204ENST00000596842 ZHX1Q9UKY1 873 aaPredicted RBP18.7■□□□□ 0.58
UPF1-204ENST00000596842 MSH6P52701 1360 aa18.7■□□□□ 0.58
UPF1-204ENST00000596842 NUCB2P80303 420 aa18.7■□□□□ 0.58
UPF1-204ENST00000596842 ANKRD44Q8N8A2 993 aa18.7■□□□□ 0.58
UPF1-204ENST00000596842 HECW2Q9P2P5 1572 aa18.7■□□□□ 0.58
UPF1-204ENST00000596842 ZNF853P0CG23 659 aa18.7■□□□□ 0.58
UPF1-204ENST00000596842 MAP4K4O95819 1239 aaPredicted RBP18.69■□□□□ 0.58
UPF1-204ENST00000596842 FAM69CQ0P6D2 419 aa18.69■□□□□ 0.58
UPF1-204ENST00000596842 C14orf37Q86TY3 774 aa18.69■□□□□ 0.58
UPF1-204ENST00000596842 RIMS2Q9UQ26 1411 aa18.69■□□□□ 0.58
UPF1-204ENST00000596842 SIGLEC1Q9BZZ2 1709 aa18.69■□□□□ 0.58
UPF1-204ENST00000596842 UPF3BQ9BZI7 483 aaKnown RBP18.69■□□□□ 0.58
UPF1-204ENST00000596842 KLHL40Q2TBA0 621 aa18.69■□□□□ 0.58
UPF1-204ENST00000596842 ZFYVE9O95405 1425 aa18.69■□□□□ 0.58
UPF1-204ENST00000596842 REC8O95072 547 aa18.68■□□□□ 0.58
UPF1-204ENST00000596842 FKBP5Q13451 457 aaPredicted RBP18.68■□□□□ 0.58
UPF1-204ENST00000596842 SYCE3A1L190 88 aa18.68■□□□□ 0.58
UPF1-204ENST00000596842 GDPD2Q9HCC8 539 aa18.68■□□□□ 0.58
UPF1-204ENST00000596842 PTMSP20962 102 aa18.68■□□□□ 0.58
UPF1-204ENST00000596842 ZSCAN23Q3MJ62 389 aa18.68■□□□□ 0.58
UPF1-204ENST00000596842 LARP6Q9BRS8 491 aaKnown RBP18.68■□□□□ 0.58
UPF1-204ENST00000596842 PRIM1P49642 420 aaKnown RBP18.67■□□□□ 0.58
UPF1-204ENST00000596842 NCOA3Q9Y6Q9 1424 aa18.67■□□□□ 0.58
UPF1-204ENST00000596842 HMMRO75330 724 aa18.67■□□□□ 0.58
UPF1-204ENST00000596842 KIAA1211Q6ZU35 1233 aa18.67■□□□□ 0.58
UPF1-204ENST00000596842 RPAP2Q8IXW5 612 aaPredicted RBP18.67■□□□□ 0.58
UPF1-204ENST00000596842 IL1RAPL2Q9NP60 686 aa18.67■□□□□ 0.58
UPF1-204ENST00000596842 USP32Q8NFA0 1604 aa18.66■□□□□ 0.58
UPF1-204ENST00000596842 ERC2O15083 957 aa18.66■□□□□ 0.58
UPF1-204ENST00000596842 CCDC173Q0VFZ6 552 aa18.66■□□□□ 0.58
UPF1-204ENST00000596842 PTMAP06454 111 aaKnown RBP18.65■□□□□ 0.58
UPF1-204ENST00000596842 BRPF1P55201 1214 aaPredicted RBP18.65■□□□□ 0.58
UPF1-204ENST00000596842 ISY1Q9ULR0 285 aaKnown RBP18.65■□□□□ 0.58
UPF1-204ENST00000596842 PLCB2Q00722 1185 aa18.65■□□□□ 0.58
UPF1-204ENST00000596842 STK31Q9BXU1 1019 aa18.65■□□□□ 0.58
UPF1-204ENST00000596842 RBSNQ9H1K0 784 aa18.65■□□□□ 0.58
UPF1-204ENST00000596842 PTCH1Q13635 1447 aa18.65■□□□□ 0.58
UPF1-204ENST00000596842 PIK3C2BO00750 1634 aa18.65■□□□□ 0.58
UPF1-204ENST00000596842 R3HCC1Q9Y3T6 440 aaKnown RBP18.64■□□□□ 0.58
UPF1-204ENST00000596842 BCL11BQ9C0K0 894 aaPredicted RBP18.64■□□□□ 0.57
UPF1-204ENST00000596842 LMBRD1Q9NUN5 540 aa18.64■□□□□ 0.57
UPF1-204ENST00000596842 NSFL1CQ9UNZ2 370 aaKnown RBP18.64■□□□□ 0.57
UPF1-204ENST00000596842 AMPHP49418 695 aa18.63■□□□□ 0.57
UPF1-204ENST00000596842 XPCQ01831 940 aaPredicted RBP18.63■□□□□ 0.57
UPF1-204ENST00000596842 SLC26A8Q96RN1 970 aa18.63■□□□□ 0.57
UPF1-204ENST00000596842 CDK11BP21127 795 aaKnown RBP18.63■□□□□ 0.57
UPF1-204ENST00000596842 MYO5BQ9ULV0 1848 aa18.63■□□□□ 0.57
UPF1-204ENST00000596842 PDE1AP54750 535 aa18.62■□□□□ 0.57
UPF1-204ENST00000596842 HAP1P54257 671 aaPredicted RBP18.62■□□□□ 0.57
UPF1-204ENST00000596842 AEBP2Q6ZN18 517 aaPredicted RBP18.62■□□□□ 0.57
UPF1-204ENST00000596842 MED14O60244 1454 aa18.62■□□□□ 0.57
UPF1-204ENST00000596842 MAP2P11137 1827 aaKnown RBP18.61■□□□□ 0.57
UPF1-204ENST00000596842 METP08581 1390 aa18.61■□□□□ 0.57
UPF1-204ENST00000596842 ZSCAN30Q86W11 494 aa18.61■□□□□ 0.57
UPF1-204ENST00000596842 ARHGEF40Q8TER5 1519 aa18.61■□□□□ 0.57
UPF1-204ENST00000596842 RTL1A6NKG5 1358 aa18.61■□□□□ 0.57
UPF1-204ENST00000596842 GPT2Q8TD30 523 aa18.61■□□□□ 0.57
UPF1-204ENST00000596842 TMX3Q96JJ7 454 aa18.61■□□□□ 0.57
UPF1-204ENST00000596842 CFAP74Q9C0B2 1584 aa18.61■□□□□ 0.57
UPF1-204ENST00000596842 EIF2S2P20042 333 aaKnown RBP18.6■□□□□ 0.57
UPF1-204ENST00000596842 DNTTIP2Q5QJE6 756 aaKnown RBP18.6■□□□□ 0.57
UPF1-204ENST00000596842 ACEP12821 1306 aa18.6■□□□□ 0.57
UPF1-204ENST00000596842 NUTM1Q86Y26 1132 aa18.6■□□□□ 0.57
UPF1-204ENST00000596842 NGDNQ8NEJ9 315 aaKnown RBP18.6■□□□□ 0.57
UPF1-204ENST00000596842 PALD1Q9ULE6 856 aa18.6■□□□□ 0.57
UPF1-204ENST00000596842 CHL1O00533 1208 aa18.6■□□□□ 0.57
UPF1-204ENST00000596842 MTHFSDQ2M296 383 aaKnown RBP18.59■□□□□ 0.57
UPF1-204ENST00000596842 GNAI2P04899 355 aa18.59■□□□□ 0.57
UPF1-204ENST00000596842 ALKQ9UM73 1620 aa18.59■□□□□ 0.57
UPF1-204ENST00000596842 MCCP23508 829 aa18.59■□□□□ 0.57
UPF1-204ENST00000596842 TMEM63CQ9P1W3 806 aa18.59■□□□□ 0.57
UPF1-204ENST00000596842 PNMA6EA0A0J9YXQ4 647 aa18.58■□□□□ 0.57
UPF1-204ENST00000596842 BBXQ8WY36 941 aaPredicted RBP18.58■□□□□ 0.57
UPF1-204ENST00000596842 PRR36Q9H6K5 1346 aa18.58■□□□□ 0.56
UPF1-204ENST00000596842 LRRCC1Q9C099 1032 aa18.58■□□□□ 0.56
UPF1-204ENST00000596842 ZDHHC9Q9Y397 364 aa18.58■□□□□ 0.56
UPF1-204ENST00000596842 PIK3R4Q99570 1358 aa18.58■□□□□ 0.56
UPF1-204ENST00000596842 EDC4Q6P2E9 1401 aaKnown RBP18.57■□□□□ 0.56
UPF1-204ENST00000596842 LRRFIP2Q9Y608 721 aaKnown RBP18.57■□□□□ 0.56
UPF1-204ENST00000596842 CWC22Q9HCG8 908 aaKnown RBP18.57■□□□□ 0.56
UPF1-204ENST00000596842 DDX54Q8TDD1 881 aaKnown RBP18.56■□□□□ 0.56
UPF1-204ENST00000596842 TTC21BQ7Z4L5 1316 aa18.56■□□□□ 0.56
UPF1-204ENST00000596842 MX1P20591 662 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms