RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 RAPGEF4Q8WZA2 1011 aa22.15■■□□□ 1.14
TRIM28-206ENST00000595974 BTAF1O14981 1849 aa22.14■■□□□ 1.13
TRIM28-206ENST00000595974 DOT1LQ8TEK3 1739 aa22.14■■□□□ 1.13
TRIM28-206ENST00000595974 PER1O15534 1290 aaPredicted RBP22.13■■□□□ 1.13
TRIM28-206ENST00000595974 PLSCR1O15162 318 aa22.12■■□□□ 1.13
TRIM28-206ENST00000595974 TATP17735 454 aaPredicted RBP22.12■■□□□ 1.13
TRIM28-206ENST00000595974 ZCRB1Q8TBF4 217 aaKnown RBP22.12■■□□□ 1.13
TRIM28-206ENST00000595974 NPC1L1Q9UHC9 1359 aa22.12■■□□□ 1.13
TRIM28-206ENST00000595974 PTF1AQ7RTS3 328 aa22.1■■□□□ 1.13
TRIM28-206ENST00000595974 DDX54Q8TDD1 881 aaKnown RBP22.1■■□□□ 1.13
TRIM28-206ENST00000595974 EIF4A2Q14240 407 aaKnown RBP22.09■■□□□ 1.13
TRIM28-206ENST00000595974 ACSBG1Q96GR2 724 aa22.08■■□□□ 1.13
TRIM28-206ENST00000595974 EYA1Q99502 592 aa22.08■■□□□ 1.13
TRIM28-206ENST00000595974 PLEKHG2Q9H7P9 1386 aa22.08■■□□□ 1.12
TRIM28-206ENST00000595974 PCDH11XQ9BZA7 1347 aa22.07■■□□□ 1.12
TRIM28-206ENST00000595974 PCDH11YQ9BZA8 1340 aa22.07■■□□□ 1.12
TRIM28-206ENST00000595974 KCNQ2O43526 872 aa22.07■■□□□ 1.12
TRIM28-206ENST00000595974 IGSF1Q8N6C5 1336 aa22.06■■□□□ 1.12
TRIM28-206ENST00000595974 SRCAPQ6ZRS2 3230 aa22.04■■□□□ 1.12
TRIM28-206ENST00000595974 CC2D1BQ5T0F9 858 aaKnown RBP22.04■■□□□ 1.12
TRIM28-206ENST00000595974 LRP5O75197 1615 aa22.02■■□□□ 1.12
TRIM28-206ENST00000595974 PSDA5PKW4 1024 aaPredicted RBP22.02■■□□□ 1.12
TRIM28-206ENST00000595974 NBPF14Q5TI25 921 aa22.02■■□□□ 1.12
TRIM28-206ENST00000595974 TOGARAM1Q9Y4F4 1720 aa22.01■■□□□ 1.11
TRIM28-206ENST00000595974 R3HDM1Q15032 1099 aaKnown RBP22.01■■□□□ 1.11
TRIM28-206ENST00000595974 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.01■■□□□ 1.11
TRIM28-206ENST00000595974 ITGB4P16144 1822 aa22.01■■□□□ 1.11
TRIM28-206ENST00000595974 SPG7Q9UQ90 795 aa22■■□□□ 1.11
TRIM28-206ENST00000595974 LY75O60449 1722 aa22■■□□□ 1.11
TRIM28-206ENST00000595974 CYP27B1O15528 508 aa21.99■■□□□ 1.11
TRIM28-206ENST00000595974 TXNRD1Q16881 649 aa21.99■■□□□ 1.11
TRIM28-206ENST00000595974 MTHFSP49914 203 aa21.98■■□□□ 1.11
TRIM28-206ENST00000595974 PROM2Q8N271 834 aa21.98■■□□□ 1.11
TRIM28-206ENST00000595974 PAPPAQ13219 1627 aa21.98■■□□□ 1.11
TRIM28-206ENST00000595974 PRIM1P49642 420 aaKnown RBP21.97■■□□□ 1.11
TRIM28-206ENST00000595974 SYTL4Q96C24 671 aaPredicted RBP21.97■■□□□ 1.11
TRIM28-206ENST00000595974 KDRP35968 1356 aa21.96■■□□□ 1.11
TRIM28-206ENST00000595974 IL13P35225 146 aa21.95■■□□□ 1.1
TRIM28-206ENST00000595974 ANO8Q9HCE9 1232 aaPredicted RBP21.94■■□□□ 1.1
TRIM28-206ENST00000595974 COL3A1P02461 1466 aaPredicted RBP21.93■■□□□ 1.1
TRIM28-206ENST00000595974 NKX1-1Q15270 411 aaPredicted RBP21.93■■□□□ 1.1
TRIM28-206ENST00000595974 CASZ1Q86V15 1759 aa21.93■■□□□ 1.1
TRIM28-206ENST00000595974 CNGB1Q14028 1251 aaPredicted RBP21.92■■□□□ 1.1
TRIM28-206ENST00000595974 IFNL2Q8IZJ0 200 aa21.92■■□□□ 1.1
TRIM28-206ENST00000595974 PHKG2P15735 406 aa21.91■■□□□ 1.1
TRIM28-206ENST00000595974 SLC27A3Q5K4L6 730 aa21.91■■□□□ 1.1
TRIM28-206ENST00000595974 AEBP1Q8IUX7 1158 aa21.91■■□□□ 1.1
TRIM28-206ENST00000595974 QSER1Q2KHR3 1735 aa21.9■■□□□ 1.1
TRIM28-206ENST00000595974 AMOTQ4VCS5 1084 aa21.9■■□□□ 1.1
TRIM28-206ENST00000595974 SULT6B1Q6IMI4 303 aa21.9■■□□□ 1.1
TRIM28-206ENST00000595974 STK32BQ9NY57 414 aa21.9■■□□□ 1.1
TRIM28-206ENST00000595974 DIAPH1O60610 1272 aaKnown RBP21.89■■□□□ 1.09
TRIM28-206ENST00000595974 PLEKHO1Q53GL0 409 aaPredicted RBP21.89■■□□□ 1.09
TRIM28-206ENST00000595974 LRRC4BQ9NT99 713 aa21.87■■□□□ 1.09
TRIM28-206ENST00000595974 TAF1LQ8IZX4 1826 aa21.87■■□□□ 1.09
TRIM28-206ENST00000595974 C5P01031 1676 aa21.86■■□□□ 1.09
TRIM28-206ENST00000595974 VIRMAQ69YN4 1812 aaKnown RBP21.86■■□□□ 1.09
TRIM28-206ENST00000595974 TUBGCP6Q96RT7 1819 aa21.86■■□□□ 1.09
TRIM28-206ENST00000595974 HSP90AB1P08238 724 aaKnown RBP21.86■■□□□ 1.09
TRIM28-206ENST00000595974 SLC15A2Q16348 729 aa21.86■■□□□ 1.09
TRIM28-206ENST00000595974 ZNF530Q6P9A1 599 aaPredicted RBP21.86■■□□□ 1.09
TRIM28-206ENST00000595974 MPRIPQ6WCQ1 1025 aa21.86■■□□□ 1.09
TRIM28-206ENST00000595974 SCN11AQ9UI33 1791 aa21.85■■□□□ 1.09
TRIM28-206ENST00000595974 ZEB1P37275 1124 aaPredicted RBP21.85■■□□□ 1.09
TRIM28-206ENST00000595974 PALLDQ8WX93 1383 aa21.85■■□□□ 1.09
TRIM28-206ENST00000595974 CFAP53Q96M91 514 aa21.84■■□□□ 1.09
TRIM28-206ENST00000595974 SMARCC1Q92922 1105 aaPredicted RBP21.83■■□□□ 1.09
TRIM28-206ENST00000595974 DCAF5Q96JK2 942 aa21.83■■□□□ 1.09
TRIM28-206ENST00000595974 TMOD3Q9NYL9 352 aa21.83■■□□□ 1.09
TRIM28-206ENST00000595974 CCNL1Q9UK58 526 aaPredicted RBP21.83■■□□□ 1.09
TRIM28-206ENST00000595974 KDM6AO15550 1401 aaPredicted RBP21.82■■□□□ 1.08
TRIM28-206ENST00000595974 PPP2R1AP30153 589 aa21.82■■□□□ 1.08
TRIM28-206ENST00000595974 C1orf141Q5JVX7 400 aa21.82■■□□□ 1.08
TRIM28-206ENST00000595974 PIGBQ92521 554 aa21.82■■□□□ 1.08
TRIM28-206ENST00000595974 HMOX1P09601 288 aa21.81■■□□□ 1.08
TRIM28-206ENST00000595974 ERVV-2B6SEH9 535 aa21.8■■□□□ 1.08
TRIM28-206ENST00000595974 HMGB2P26583 209 aaKnown RBP21.8■■□□□ 1.08
TRIM28-206ENST00000595974 ZNF827Q17R98 1081 aa21.8■■□□□ 1.08
TRIM28-206ENST00000595974 U2SURPO15042 1029 aaKnown RBP21.79■■□□□ 1.08
TRIM28-206ENST00000595974 AKT1S1Q96B36 256 aa21.79■■□□□ 1.08
TRIM28-206ENST00000595974 SPON1Q9HCB6 807 aa21.79■■□□□ 1.08
TRIM28-206ENST00000595974 KCNQ4P56696 695 aa21.78■■□□□ 1.08
TRIM28-206ENST00000595974 ZNF831Q5JPB2 1677 aa21.77■■□□□ 1.08
TRIM28-206ENST00000595974 ADAMTS7Q9UKP4 1686 aa21.77■■□□□ 1.08
TRIM28-206ENST00000595974 C4BP0C0L5 1744 aa21.77■■□□□ 1.08
TRIM28-206ENST00000595974 AKAP4Q5JQC9 854 aa21.76■■□□□ 1.07
TRIM28-206ENST00000595974 PDGFDQ9GZP0 370 aaPredicted RBP21.76■■□□□ 1.07
TRIM28-206ENST00000595974 NUDCQ9Y266 331 aa21.75■■□□□ 1.07
TRIM28-206ENST00000595974 MRC1P22897 1456 aa21.75■■□□□ 1.07
TRIM28-206ENST00000595974 ASAP1Q9ULH1 1129 aa21.74■■□□□ 1.07
TRIM28-206ENST00000595974 UBR3Q6ZT12 1888 aa21.73■■□□□ 1.07
TRIM28-206ENST00000595974 CABP4P57796 275 aa21.73■■□□□ 1.07
TRIM28-206ENST00000595974 DDX10Q13206 875 aaKnown RBP21.73■■□□□ 1.07
TRIM28-206ENST00000595974 TFCP2L1Q9NZI6 479 aa21.73■■□□□ 1.07
TRIM28-206ENST00000595974 COL24A1Q17RW2 1714 aa21.72■■□□□ 1.07
TRIM28-206ENST00000595974 LOC102724428A0A0B4J2F2 783 aa21.72■■□□□ 1.07
TRIM28-206ENST00000595974 ZBTB7AO95365 584 aa21.72■■□□□ 1.07
TRIM28-206ENST00000595974 SIK1P57059 783 aa21.72■■□□□ 1.07
TRIM28-206ENST00000595974 MTFR1LQ9H019 292 aa21.72■■□□□ 1.07
TRIM28-206ENST00000595974 ATG3Q9NT62 314 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms