RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 EP400Q96L91 3159 aa34.71■■■■□ 3.15
TRIM28-204ENST00000594806 RGPD1P0DJD0 1748 aa34.7■■■■□ 3.15
TRIM28-204ENST00000594806 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP34.69■■■■□ 3.14
TRIM28-204ENST00000594806 COL3A1P02461 1466 aaPredicted RBP34.66■■■■□ 3.14
TRIM28-204ENST00000594806 SBF2Q86WG5 1849 aa34.66■■■■□ 3.14
TRIM28-204ENST00000594806 PKD1L3Q7Z443 1732 aa34.64■■■■□ 3.14
TRIM28-204ENST00000594806 SHANK3Q9BYB0 1731 aa34.64■■■■□ 3.14
TRIM28-204ENST00000594806 KDRP35968 1356 aa34.64■■■■□ 3.14
TRIM28-204ENST00000594806 TRIM37O94972 964 aa34.64■■■■□ 3.14
TRIM28-204ENST00000594806 DDX54Q8TDD1 881 aaKnown RBP34.64■■■■□ 3.14
TRIM28-204ENST00000594806 SPG7Q9UQ90 795 aa34.64■■■■□ 3.14
TRIM28-204ENST00000594806 PCDH11XQ9BZA7 1347 aa34.63■■■■□ 3.13
TRIM28-204ENST00000594806 PCDH11YQ9BZA8 1340 aa34.63■■■■□ 3.13
TRIM28-204ENST00000594806 SULT6B1Q6IMI4 303 aa34.61■■■■□ 3.13
TRIM28-204ENST00000594806 BAG6P46379 1132 aa34.6■■■■□ 3.13
TRIM28-204ENST00000594806 NUDCQ9Y266 331 aa34.6■■■■□ 3.13
TRIM28-204ENST00000594806 TNS1Q9HBL0 1735 aaKnown RBP34.59■■■■□ 3.13
TRIM28-204ENST00000594806 BCL11BQ9C0K0 894 aaPredicted RBP34.59■■■■□ 3.13
TRIM28-204ENST00000594806 KAT6BQ8WYB5 2073 aa34.59■■■■□ 3.13
TRIM28-204ENST00000594806 AMOTQ4VCS5 1084 aa34.57■■■■□ 3.12
TRIM28-204ENST00000594806 PLEKHO1Q53GL0 409 aaPredicted RBP34.56■■■■□ 3.12
TRIM28-204ENST00000594806 AEBP1Q8IUX7 1158 aa34.56■■■■□ 3.12
TRIM28-204ENST00000594806 MYBBP1AQ9BQG0 1328 aaKnown RBP34.55■■■■□ 3.12
TRIM28-204ENST00000594806 U2SURPO15042 1029 aaKnown RBP34.53■■■■□ 3.12
TRIM28-204ENST00000594806 PRKRIP1Q9H875 184 aaPredicted RBP34.53■■■■□ 3.12
TRIM28-204ENST00000594806 NHSQ6T4R5 1651 aa34.52■■■■□ 3.12
TRIM28-204ENST00000594806 CYP27B1O15528 508 aa34.52■■■■□ 3.12
TRIM28-204ENST00000594806 APBA3O96018 575 aa34.52■■■■□ 3.12
TRIM28-204ENST00000594806 IFNL2Q8IZJ0 200 aa34.51■■■■□ 3.12
TRIM28-204ENST00000594806 HMOX1P09601 288 aa34.5■■■■□ 3.11
TRIM28-204ENST00000594806 NKX1-1Q15270 411 aaPredicted RBP34.5■■■■□ 3.11
TRIM28-204ENST00000594806 DEFB132Q7Z7B7 95 aa34.49■■■■□ 3.11
TRIM28-204ENST00000594806 ACSBG1Q96GR2 724 aa34.47■■■■□ 3.11
TRIM28-204ENST00000594806 PLSCR1O15162 318 aa34.46■■■■□ 3.11
TRIM28-204ENST00000594806 PHKG2P15735 406 aa34.46■■■■□ 3.11
TRIM28-204ENST00000594806 KCNQ2O43526 872 aa34.45■■■■□ 3.11
TRIM28-204ENST00000594806 HSP90AB1P08238 724 aaKnown RBP34.45■■■■□ 3.11
TRIM28-204ENST00000594806 EN1Q05925 392 aaPredicted RBP34.44■■■■□ 3.1
TRIM28-204ENST00000594806 DOT1LQ8TEK3 1739 aa34.44■■■■□ 3.1
TRIM28-204ENST00000594806 RGPD3A6NKT7 1758 aaPredicted RBP34.44■■■■□ 3.1
TRIM28-204ENST00000594806 RGPD4Q7Z3J3 1758 aa34.44■■■■□ 3.1
TRIM28-204ENST00000594806 U2AF1L5P0DN76 240 aaPredicted RBP34.43■■■■□ 3.1
TRIM28-204ENST00000594806 U2AF1Q01081 240 aaKnown RBP eCLIP34.43■■■■□ 3.1
TRIM28-204ENST00000594806 CAMKK2Q96RR4 588 aa34.43■■■■□ 3.1
TRIM28-204ENST00000594806 FCHSD2O94868 740 aa34.42■■■■□ 3.1
TRIM28-204ENST00000594806 ZNF530Q6P9A1 599 aaPredicted RBP34.42■■■■□ 3.1
TRIM28-204ENST00000594806 PRIM1P49642 420 aaKnown RBP34.41■■■■□ 3.1
TRIM28-204ENST00000594806 C1orf141Q5JVX7 400 aa34.41■■■■□ 3.1
TRIM28-204ENST00000594806 PTF1AQ7RTS3 328 aa34.41■■■■□ 3.1
TRIM28-204ENST00000594806 BTAF1O14981 1849 aa34.39■■■■□ 3.1
TRIM28-204ENST00000594806 SYTL4Q96C24 671 aaPredicted RBP34.38■■■■□ 3.09
TRIM28-204ENST00000594806 RSPH6AQ9H0K4 717 aa34.38■■■■□ 3.09
TRIM28-204ENST00000594806 DCAF5Q96JK2 942 aa34.37■■■■□ 3.09
TRIM28-204ENST00000594806 ANP32CO43423 234 aa34.36■■■■□ 3.09
TRIM28-204ENST00000594806 EZH2Q15910 746 aaKnown RBP34.36■■■■□ 3.09
TRIM28-204ENST00000594806 AKAP4Q5JQC9 854 aa34.35■■■■□ 3.09
TRIM28-204ENST00000594806 PRKAR2BP31323 418 aa34.34■■■■□ 3.09
TRIM28-204ENST00000594806 PNNQ9H307 717 aaKnown RBP34.34■■■■□ 3.09
TRIM28-204ENST00000594806 ITGB4P16144 1822 aa34.34■■■■□ 3.09
TRIM28-204ENST00000594806 GAS2L2Q8NHY3 880 aa34.33■■■■□ 3.09
TRIM28-204ENST00000594806 TOGARAM1Q9Y4F4 1720 aa34.33■■■■□ 3.09
TRIM28-204ENST00000594806 ERVV-2B6SEH9 535 aa34.32■■■■□ 3.08
TRIM28-204ENST00000594806 MTHFSDQ2M296 383 aaKnown RBP34.32■■■■□ 3.08
TRIM28-204ENST00000594806 RREB1Q92766 1687 aa34.31■■■■□ 3.08
TRIM28-204ENST00000594806 NEFMP07197 916 aa34.29■■■■□ 3.08
TRIM28-204ENST00000594806 MPRIPQ6WCQ1 1025 aa34.28■■■■□ 3.08
TRIM28-204ENST00000594806 TMOD3Q9NYL9 352 aa34.27■■■■□ 3.08
TRIM28-204ENST00000594806 TXNRD1Q16881 649 aa34.26■■■■□ 3.08
TRIM28-204ENST00000594806 KDM6AO15550 1401 aaPredicted RBP34.26■■■■□ 3.07
TRIM28-204ENST00000594806 SCN11AQ9UI33 1791 aa34.26■■■■□ 3.07
TRIM28-204ENST00000594806 PIGBQ92521 554 aa34.24■■■■□ 3.07
TRIM28-204ENST00000594806 SMARCC1Q92922 1105 aaPredicted RBP34.24■■■■□ 3.07
TRIM28-204ENST00000594806 PHACTR3Q96KR7 559 aa34.24■■■■□ 3.07
TRIM28-204ENST00000594806 HMGB2P26583 209 aaKnown RBP34.23■■■■□ 3.07
TRIM28-204ENST00000594806 PROM2Q8N271 834 aa34.23■■■■□ 3.07
TRIM28-204ENST00000594806 NUP188Q5SRE5 1749 aa34.22■■■■□ 3.07
TRIM28-204ENST00000594806 WDR43Q15061 677 aaKnown RBP eCLIP34.22■■■■□ 3.072e-6■■□□□ 11.4
TRIM28-204ENST00000594806 SLC27A3Q5K4L6 730 aa34.22■■■■□ 3.07
TRIM28-204ENST00000594806 GNAT3A8MTJ3 354 aa34.21■■■■□ 3.07
TRIM28-204ENST00000594806 CABP4P57796 275 aa34.21■■■■□ 3.07
TRIM28-204ENST00000594806 NBPF14Q5TI25 921 aa34.21■■■■□ 3.07
TRIM28-204ENST00000594806 MAP3K5Q99683 1374 aa34.21■■■■□ 3.07
TRIM28-204ENST00000594806 LY75O60449 1722 aa34.21■■■■□ 3.07
TRIM28-204ENST00000594806 VIRMAQ69YN4 1812 aaKnown RBP34.2■■■■□ 3.07
TRIM28-204ENST00000594806 RNMTO43148 476 aaKnown RBP34.19■■■■□ 3.06
TRIM28-204ENST00000594806 PLEKHF1Q96S99 279 aa34.19■■■■□ 3.06
TRIM28-204ENST00000594806 ADAMTS7Q9UKP4 1686 aa34.19■■■■□ 3.06
TRIM28-204ENST00000594806 MAPK8IP3Q9UPT6 1336 aa34.16■■■■□ 3.06
TRIM28-204ENST00000594806 PALLDQ8WX93 1383 aa34.15■■■■□ 3.06
TRIM28-204ENST00000594806 LGR6Q9HBX8 967 aa34.15■■■■□ 3.06
TRIM28-204ENST00000594806 HTATSF1O43719 755 aaKnown RBP34.14■■■■□ 3.06
TRIM28-204ENST00000594806 SLC52A2Q9HAB3 445 aa34.14■■■■□ 3.06
TRIM28-204ENST00000594806 NFATC2IPQ8NCF5 419 aa34.13■■■■□ 3.05
TRIM28-204ENST00000594806 MRC1P22897 1456 aa34.13■■■■□ 3.05
TRIM28-204ENST00000594806 RTF1Q92541 710 aaKnown RBP34.11■■■■□ 3.05
TRIM28-204ENST00000594806 ATG3Q9NT62 314 aa34.1■■■■□ 3.05
TRIM28-204ENST00000594806 CCNL1Q9UK58 526 aaPredicted RBP34.1■■■■□ 3.05
TRIM28-204ENST00000594806 ASAP1Q9ULH1 1129 aa34.1■■■■□ 3.05
TRIM28-204ENST00000594806 ADAMTS8Q9UP79 889 aa34.1■■■■□ 3.05
TRIM28-204ENST00000594806 IL17REQ8NFR9 667 aa34.09■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms