RNA–Protein interactions for RNA: ENST00000592052.1

TMEM259-208, Transcript of transmembrane protein 259, human

Gene TMEM259, Length 1,637 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM259-208	ENST00000592052	DDB1	Q16531	1140 aa		33.02	■■■□□ 2.88
TMEM259-208	ENST00000592052	PARP4	Q9UKK3	1724 aa	Known RBP	33.02	■■■□□ 2.88
TMEM259-208	ENST00000592052	EXOC5	O00471	708 aa		33.01	■■■□□ 2.87
TMEM259-208	ENST00000592052	FCHSD2	O94868	740 aa		33.01	■■■□□ 2.87
TMEM259-208	ENST00000592052	PLEKHG2	Q9H7P9	1386 aa		33	■■■□□ 2.87
TMEM259-208	ENST00000592052	RSPH6A	Q9H0K4	717 aa		32.99	■■■□□ 2.87
TMEM259-208	ENST00000592052	ZCRB1	Q8TBF4	217 aa	Known RBP	32.97	■■■□□ 2.87
TMEM259-208	ENST00000592052	PNISR	Q8TF01	805 aa	Known RBP	32.97	■■■□□ 2.87
TMEM259-208	ENST00000592052	TNS2	Q63HR2	1409 aa		32.97	■■■□□ 2.87
TMEM259-208	ENST00000592052	LRRC37A3	O60309	1634 aa		32.97	■■■□□ 2.87
TMEM259-208	ENST00000592052	PRKAR2B	P31323	418 aa		32.96	■■■□□ 2.87
TMEM259-208	ENST00000592052	PDE3B	Q13370	1112 aa		32.95	■■■□□ 2.87
TMEM259-208	ENST00000592052	PNN	Q9H307	717 aa	Known RBP	32.95	■■■□□ 2.87
TMEM259-208	ENST00000592052	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	32.95	■■■□□ 2.87
TMEM259-208	ENST00000592052	ADAMTS8	Q9UP79	889 aa		32.95	■■■□□ 2.87
TMEM259-208	ENST00000592052	SPG7	Q9UQ90	795 aa		32.95	■■■□□ 2.87
TMEM259-208	ENST00000592052	AMOT	Q4VCS5	1084 aa		32.94	■■■□□ 2.86
TMEM259-208	ENST00000592052	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.94	■■■□□ 2.86
TMEM259-208	ENST00000592052	KRT27	Q7Z3Y8	459 aa		32.91	■■■□□ 2.86
TMEM259-208	ENST00000592052	NEFM	P07197	916 aa		32.9	■■■□□ 2.86
TMEM259-208	ENST00000592052	PCDH11X	Q9BZA7	1347 aa		32.9	■■■□□ 2.86
TMEM259-208	ENST00000592052	PCDH11Y	Q9BZA8	1340 aa		32.9	■■■□□ 2.86
TMEM259-208	ENST00000592052	PKD1L3	Q7Z443	1732 aa		32.89	■■■□□ 2.86
TMEM259-208	ENST00000592052	DDX54	Q8TDD1	881 aa	Known RBP	32.89	■■■□□ 2.86
TMEM259-208	ENST00000592052	PLEKHF1	Q96S99	279 aa		32.88	■■■□□ 2.85
TMEM259-208	ENST00000592052	BRWD3	Q6RI45	1802 aa		32.87	■■■□□ 2.85
TMEM259-208	ENST00000592052	PHACTR3	Q96KR7	559 aa		32.87	■■■□□ 2.85
TMEM259-208	ENST00000592052	MARCH10	Q8NA82	808 aa	Predicted RBP	32.86	■■■□□ 2.85
TMEM259-208	ENST00000592052	MAPK8IP3	Q9UPT6	1336 aa		32.85	■■■□□ 2.85
TMEM259-208	ENST00000592052	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.84	■■■□□ 2.85
TMEM259-208	ENST00000592052	FAM9B	Q8IZU0	186 aa		32.84	■■■□□ 2.85
TMEM259-208	ENST00000592052	MTHFSD	Q2M296	383 aa	Known RBP	32.84	■■■□□ 2.85
TMEM259-208	ENST00000592052	SHANK3	Q9BYB0	1731 aa		32.83	■■■□□ 2.85
TMEM259-208	ENST00000592052	CYP27B1	O15528	508 aa		32.83	■■■□□ 2.85
TMEM259-208	ENST00000592052	RUNDC1	Q96C34	613 aa		32.83	■■■□□ 2.85
TMEM259-208	ENST00000592052	CCDC146	Q8IYE0	955 aa		32.82	■■■□□ 2.84
TMEM259-208	ENST00000592052	IFNL2	Q8IZJ0	200 aa		32.82	■■■□□ 2.84
TMEM259-208	ENST00000592052	GAS2L2	Q8NHY3	880 aa		32.82	■■■□□ 2.84
TMEM259-208	ENST00000592052	C1orf141	Q5JVX7	400 aa		32.81	■■■□□ 2.84
TMEM259-208	ENST00000592052	PHKG2	P15735	406 aa		32.8	■■■□□ 2.84
TMEM259-208	ENST00000592052	FAM182B	Q5T319	152 aa		32.8	■■■□□ 2.84
TMEM259-208	ENST00000592052	AKAP4	Q5JQC9	854 aa		32.77	■■■□□ 2.84
TMEM259-208	ENST00000592052	FAM196A	Q6ZSG2	479 aa		32.77	■■■□□ 2.84
TMEM259-208	ENST00000592052	HSP90AB1	P08238	724 aa	Known RBP	32.75	■■■□□ 2.83
TMEM259-208	ENST00000592052	NKX1-1	Q15270	411 aa	Predicted RBP	32.74	■■■□□ 2.83
TMEM259-208	ENST00000592052	ILDR2	Q71H61	639 aa		32.74	■■■□□ 2.83
TMEM259-208	ENST00000592052	BCL9	O00512	1426 aa		32.74	■■■□□ 2.83
TMEM259-208	ENST00000592052	NFE2L2	Q16236	605 aa		32.73	■■■□□ 2.83
TMEM259-208	ENST00000592052	MAP3K5	Q99683	1374 aa		32.72	■■■□□ 2.83
TMEM259-208	ENST00000592052	GNAT3	A8MTJ3	354 aa		32.71	■■■□□ 2.83
TMEM259-208	ENST00000592052	DCAF5	Q96JK2	942 aa		32.71	■■■□□ 2.83
TMEM259-208	ENST00000592052	TMPO	P42166	694 aa	Known RBP	32.69	■■■□□ 2.82
TMEM259-208	ENST00000592052	MPRIP	Q6WCQ1	1025 aa		32.69	■■■□□ 2.82
TMEM259-208	ENST00000592052	EP400	Q96L91	3159 aa		32.68	■■■□□ 2.82
TMEM259-208	ENST00000592052	APAF1	O14727	1248 aa		32.68	■■■□□ 2.82
TMEM259-208	ENST00000592052	RTF1	Q92541	710 aa	Known RBP	32.66	■■■□□ 2.82
TMEM259-208	ENST00000592052	RIPK4	P57078	832 aa		32.66	■■■□□ 2.82
TMEM259-208	ENST00000592052	RRP7A	Q9Y3A4	280 aa	Known RBP	32.66	■■■□□ 2.82
TMEM259-208	ENST00000592052	HTATSF1	O43719	755 aa	Known RBP	32.65	■■■□□ 2.82
TMEM259-208	ENST00000592052	ACSBG1	Q96GR2	724 aa		32.65	■■■□□ 2.82
TMEM259-208	ENST00000592052	KDM6A	O15550	1401 aa	Predicted RBP	32.64	■■■□□ 2.82
TMEM259-208	ENST00000592052	NEUROD2	Q15784	382 aa		32.64	■■■□□ 2.82
TMEM259-208	ENST00000592052	LGR6	Q9HBX8	967 aa		32.62	■■■□□ 2.81
TMEM259-208	ENST00000592052	ERVV-2	B6SEH9	535 aa		32.62	■■■□□ 2.81
TMEM259-208	ENST00000592052	RNMT	O43148	476 aa	Known RBP	32.62	■■■□□ 2.81
TMEM259-208	ENST00000592052	PRIM1	P49642	420 aa	Known RBP	32.62	■■■□□ 2.81
TMEM259-208	ENST00000592052	LMOD3	Q0VAK6	560 aa		32.61	■■■□□ 2.81
TMEM259-208	ENST00000592052	SYTL4	Q96C24	671 aa	Predicted RBP	32.61	■■■□□ 2.81
TMEM259-208	ENST00000592052	DOT1L	Q8TEK3	1739 aa		32.6	■■■□□ 2.81
TMEM259-208	ENST00000592052	TRIM37	O94972	964 aa		32.59	■■■□□ 2.81
TMEM259-208	ENST00000592052	IL17RE	Q8NFR9	667 aa		32.59	■■■□□ 2.81
TMEM259-208	ENST00000592052	KCNQ2	O43526	872 aa		32.59	■■■□□ 2.81
TMEM259-208	ENST00000592052	MCM10	Q7L590	875 aa		32.59	■■■□□ 2.81
TMEM259-208	ENST00000592052	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.59	■■■□□ 2.81
TMEM259-208	ENST00000592052	TOGARAM1	Q9Y4F4	1720 aa		32.58	■■■□□ 2.81
TMEM259-208	ENST00000592052	ADAMTS7	Q9UKP4	1686 aa		32.57	■■■□□ 2.81
TMEM259-208	ENST00000592052	DLG5	Q8TDM6	1919 aa		32.57	■■■□□ 2.81
TMEM259-208	ENST00000592052	CABP4	P57796	275 aa		32.57	■■■□□ 2.8
TMEM259-208	ENST00000592052	SBF2	Q86WG5	1849 aa		32.57	■■■□□ 2.8
TMEM259-208	ENST00000592052	CEMIP	Q8WUJ3	1361 aa		32.57	■■■□□ 2.8
TMEM259-208	ENST00000592052	SCN11A	Q9UI33	1791 aa		32.56	■■■□□ 2.8
TMEM259-208	ENST00000592052	NHS	Q6T4R5	1651 aa		32.56	■■■□□ 2.8
TMEM259-208	ENST00000592052	TMOD3	Q9NYL9	352 aa		32.56	■■■□□ 2.8
TMEM259-208	ENST00000592052	DCTN1	Q14203	1278 aa		32.55	■■■□□ 2.8
TMEM259-208	ENST00000592052	SENP3-EIF4A1	A0A087X0R7	540 aa		32.55	■■■□□ 2.8
TMEM259-208	ENST00000592052	TRIM35	Q9UPQ4	493 aa		32.55	■■■□□ 2.8
TMEM259-208	ENST00000592052	TEF	Q10587	303 aa		32.54	■■■□□ 2.8
TMEM259-208	ENST00000592052	SLC52A2	Q9HAB3	445 aa		32.54	■■■□□ 2.8
TMEM259-208	ENST00000592052	NFATC2IP	Q8NCF5	419 aa		32.53	■■■□□ 2.8
TMEM259-208	ENST00000592052	NCBP3	Q53F19	620 aa	Known RBP	32.52	■■■□□ 2.8
TMEM259-208	ENST00000592052	PTF1A	Q7RTS3	328 aa		32.52	■■■□□ 2.8
TMEM259-208	ENST00000592052	NGEF	Q8N5V2	710 aa		32.51	■■■□□ 2.8
TMEM259-208	ENST00000592052	PIGB	Q92521	554 aa		32.51	■■■□□ 2.8
TMEM259-208	ENST00000592052	MRC1	P22897	1456 aa		32.51	■■■□□ 2.8
TMEM259-208	ENST00000592052	KAT6B	Q8WYB5	2073 aa		32.51	■■■□□ 2.79
TMEM259-208	ENST00000592052	CCDC125	Q86Z20	511 aa		32.51	■■■□□ 2.79
TMEM259-208	ENST00000592052	THUMPD2	Q9BTF0	503 aa	Known RBP	32.5	■■■□□ 2.79
TMEM259-208	ENST00000592052	ITGB4	P16144	1822 aa		32.49	■■■□□ 2.79
TMEM259-208	ENST00000592052	SF3B2	Q13435	895 aa	Known RBP	32.49	■■■□□ 2.79
TMEM259-208	ENST00000592052	CCDC27	Q2M243	656 aa		32.49	■■■□□ 2.79

Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms