RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 SENP3-EIF4A1A0A087X0R7 540 aa8.06□□□□□ -1.12
LIG3-206ENST00000586058 IL13P35225 146 aa8.06□□□□□ -1.12
LIG3-206ENST00000586058 LHX8Q68G74 356 aa8.06□□□□□ -1.12
LIG3-206ENST00000586058 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.06□□□□□ -1.12
LIG3-206ENST00000586058 RSPH6AQ9H0K4 717 aa8.06□□□□□ -1.12
LIG3-206ENST00000586058 SOS2Q07890 1332 aaPredicted RBP8.05□□□□□ -1.12
LIG3-206ENST00000586058 IGSF1Q8N6C5 1336 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 FBLN1P23142 703 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 CLCN6P51797 869 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 NFE2L2Q16236 605 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 HSP90AB2PQ58FF8 381 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 SULT6B1Q6IMI4 303 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 WDR63Q8IWG1 891 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 PELP1Q8IZL8 1130 aaKnown RBP8.05□□□□□ -1.12
LIG3-206ENST00000586058 GAS2L2Q8NHY3 880 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 RTF1Q92541 710 aaKnown RBP8.05□□□□□ -1.12
LIG3-206ENST00000586058 IP6K1Q92551 441 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 LTV1Q96GA3 475 aaPredicted RBP8.05□□□□□ -1.12
LIG3-206ENST00000586058 RRP7AQ9Y3A4 280 aaKnown RBP8.05□□□□□ -1.12
LIG3-206ENST00000586058 CPDO75976 1380 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 KDRP35968 1356 aa8.05□□□□□ -1.12
LIG3-206ENST00000586058 CSB-PGBD3P0DP91 1061 aa8.04□□□□□ -1.12
LIG3-206ENST00000586058 TMPOP42166 694 aaKnown RBP8.04□□□□□ -1.12
LIG3-206ENST00000586058 RIPK4P57078 832 aa8.04□□□□□ -1.12
LIG3-206ENST00000586058 WWC1Q8IX03 1113 aa8.04□□□□□ -1.12
LIG3-206ENST00000586058 LRRC59Q96AG4 307 aaKnown RBP8.04□□□□□ -1.12
LIG3-206ENST00000586058 PLEKHG2Q9H7P9 1386 aa8.04□□□□□ -1.12
LIG3-206ENST00000586058 SIPA1L3O60292 1781 aaPredicted RBP8.04□□□□□ -1.12
LIG3-206ENST00000586058 KDM3BQ7LBC6 1761 aa8.04□□□□□ -1.12
LIG3-206ENST00000586058 IL16Q14005 1332 aa8.03□□□□□ -1.12
LIG3-206ENST00000586058 NCAPD2Q15021 1401 aa8.03□□□□□ -1.12
LIG3-206ENST00000586058 NRAPQ86VF7 1730 aa8.03□□□□□ -1.12
LIG3-206ENST00000586058 CANXP27824 592 aaKnown RBP8.03□□□□□ -1.12
LIG3-206ENST00000586058 ZC3H6P61129 1189 aaKnown RBP8.03□□□□□ -1.12
LIG3-206ENST00000586058 ARHGEF25Q86VW2 580 aa8.03□□□□□ -1.12
LIG3-206ENST00000586058 DDX17Q92841 729 aaKnown RBP8.03□□□□□ -1.12
LIG3-206ENST00000586058 PLEKHF1Q96S99 279 aa8.03□□□□□ -1.12
LIG3-206ENST00000586058 PRDM11Q9NQV5 511 aa8.03□□□□□ -1.12
LIG3-206ENST00000586058 RCAN3Q9UKA8 241 aa8.03□□□□□ -1.12
LIG3-206ENST00000586058 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.03□□□□□ -1.12
LIG3-206ENST00000586058 ZNF521Q96K83 1311 aa8.03□□□□□ -1.12
LIG3-206ENST00000586058 KIAA0232Q92628 1395 aa8.02□□□□□ -1.13
LIG3-206ENST00000586058 MNX1P50219 401 aaPredicted RBP8.02□□□□□ -1.13
LIG3-206ENST00000586058 ANKRD24Q8TF21 1146 aa8.02□□□□□ -1.13
LIG3-206ENST00000586058 SUPT16HQ9Y5B9 1047 aaKnown RBP8.02□□□□□ -1.13
LIG3-206ENST00000586058 ERBB3P21860 1342 aa8.02□□□□□ -1.13
LIG3-206ENST00000586058 MAP3K5Q99683 1374 aa8.01□□□□□ -1.13
LIG3-206ENST00000586058 UBAP1LF5GYI3 381 aa8.01□□□□□ -1.13
LIG3-206ENST00000586058 CT47B1P0C2W7 299 aaPredicted RBP8.01□□□□□ -1.13
LIG3-206ENST00000586058 GNAI1P63096 354 aa8.01□□□□□ -1.13
LIG3-206ENST00000586058 SLFN5Q08AF3 891 aa8.01□□□□□ -1.13
LIG3-206ENST00000586058 C1orf141Q5JVX7 400 aa8.01□□□□□ -1.13
LIG3-206ENST00000586058 PROM2Q8N271 834 aa8.01□□□□□ -1.13
LIG3-206ENST00000586058 RAPGEF4Q8WZA2 1011 aa8.01□□□□□ -1.13
LIG3-206ENST00000586058 EYA1Q99502 592 aa8.01□□□□□ -1.13
LIG3-206ENST00000586058 LAMB4A4D0S4 1761 aa8.01□□□□□ -1.13
LIG3-206ENST00000586058 SHANK3Q9BYB0 1731 aa8□□□□□ -1.13
LIG3-206ENST00000586058 COL5A2P05997 1499 aaPredicted RBP8□□□□□ -1.13
LIG3-206ENST00000586058 ADAMTS7Q9UKP4 1686 aa8□□□□□ -1.13
LIG3-206ENST00000586058 PIP4K2BP78356 416 aa8□□□□□ -1.13
LIG3-206ENST00000586058 FKBP8Q14318 412 aa8□□□□□ -1.13
LIG3-206ENST00000586058 AMOTQ4VCS5 1084 aa8□□□□□ -1.13
LIG3-206ENST00000586058 ERICH6BQ5W0A0 696 aa8□□□□□ -1.13
LIG3-206ENST00000586058 CDCA7LQ96GN5 454 aa8□□□□□ -1.13
LIG3-206ENST00000586058 LAS1LQ9Y4W2 734 aaKnown RBP8□□□□□ -1.13
LIG3-206ENST00000586058 OVOS2A0A0G2JMS6 1433 aa8□□□□□ -1.13
LIG3-206ENST00000586058 N4BP2Q86UW6 1770 aaPredicted RBP7.99□□□□□ -1.13
LIG3-206ENST00000586058 GALR2O43603 387 aaPredicted RBP7.99□□□□□ -1.13
LIG3-206ENST00000586058 HTATSF1O43719 755 aaKnown RBP7.99□□□□□ -1.13
LIG3-206ENST00000586058 TATP17735 454 aaPredicted RBP7.99□□□□□ -1.13
LIG3-206ENST00000586058 PLEKHO1Q53GL0 409 aaPredicted RBP7.99□□□□□ -1.13
LIG3-206ENST00000586058 DUSP27Q5VZP5 1158 aa7.99□□□□□ -1.13
LIG3-206ENST00000586058 AEBP1Q8IUX7 1158 aa7.99□□□□□ -1.13
LIG3-206ENST00000586058 CABLES1Q8TDN4 633 aa7.99□□□□□ -1.13
LIG3-206ENST00000586058 NLRP2Q9NX02 1062 aa7.99□□□□□ -1.13
LIG3-206ENST00000586058 FANCIQ9NVI1 1328 aa7.99□□□□□ -1.13
LIG3-206ENST00000586058 CRB1P82279 1406 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 GNAT3A8MTJ3 354 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 MS4A1P11836 297 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 RRP1P56182 461 aaKnown RBP7.98□□□□□ -1.13
LIG3-206ENST00000586058 EVA1CP58658 441 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 TOM1L2Q6ZVM7 507 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 USHBP1Q8N6Y0 703 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 DCBLD2Q96PD2 775 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 IFT57Q9NWB7 429 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 SPG7Q9UQ90 795 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 ITGB4P16144 1822 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 WDR17Q8IZU2 1322 aa7.98□□□□□ -1.13
LIG3-206ENST00000586058 CHRNA2Q15822 529 aa7.97□□□□□ -1.13
LIG3-206ENST00000586058 ZNF530Q6P9A1 599 aaPredicted RBP7.97□□□□□ -1.13
LIG3-206ENST00000586058 ZNF428Q96B54 188 aa7.97□□□□□ -1.13
LIG3-206ENST00000586058 PHACTR3Q96KR7 559 aa7.97□□□□□ -1.13
LIG3-206ENST00000586058 CHMP4AQ9BY43 222 aa7.97□□□□□ -1.13
LIG3-206ENST00000586058 TRIM35Q9UPQ4 493 aa7.97□□□□□ -1.13
LIG3-206ENST00000586058 DOT1LQ8TEK3 1739 aa7.97□□□□□ -1.13
LIG3-206ENST00000586058 KIF16BQ96L93 1317 aa7.97□□□□□ -1.13
LIG3-206ENST00000586058 JCADQ9P266 1359 aa7.97□□□□□ -1.13
LIG3-206ENST00000586058 TEFQ10587 303 aa7.96□□□□□ -1.14
LIG3-206ENST00000586058 NBPF6Q5VWK0 638 aa7.96□□□□□ -1.14
LIG3-206ENST00000586058 TRMT2AQ8IZ69 625 aaKnown RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms