RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	IFT57	Q9NWB7	429 aa		11.73	□□□□□ -0.53
PPP4R1-222	ENST00000582594	IDI1	Q13907	227 aa		11.73	□□□□□ -0.53
PPP4R1-222	ENST00000582594	FRMPD1	Q5SYB0	1578 aa		11.73	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ZKSCAN5	Q9Y2L8	839 aa		11.73	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ANKRD26	Q9UPS8	1709 aa		11.73	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ZNF500	O60304	480 aa	Predicted RBP	11.73	□□□□□ -0.53
PPP4R1-222	ENST00000582594	LRSAM1	Q6UWE0	723 aa		11.73	□□□□□ -0.53
PPP4R1-222	ENST00000582594	NEXMIF	Q5QGS0	1516 aa		11.72	□□□□□ -0.53
PPP4R1-222	ENST00000582594	CWC22	Q9HCG8	908 aa	Known RBP	11.72	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ZRANB1	Q9UGI0	708 aa		11.72	□□□□□ -0.53
PPP4R1-222	ENST00000582594	HS1BP3	Q53T59	392 aa		11.72	□□□□□ -0.53
PPP4R1-222	ENST00000582594	CASC1	Q6TDU7	716 aa		11.72	□□□□□ -0.53
PPP4R1-222	ENST00000582594	SIGLEC1	Q9BZZ2	1709 aa		11.71	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ARHGEF40	Q8TER5	1519 aa		11.71	□□□□□ -0.53
PPP4R1-222	ENST00000582594	PTMA	P06454	111 aa	Known RBP	11.71	□□□□□ -0.54
PPP4R1-222	ENST00000582594	ZNF853	P0CG23	659 aa		11.71	□□□□□ -0.54
PPP4R1-222	ENST00000582594	TSHZ3	Q63HK5	1081 aa		11.71	□□□□□ -0.54
PPP4R1-222	ENST00000582594	ARHGAP31	Q2M1Z3	1444 aa		11.71	□□□□□ -0.54
PPP4R1-222	ENST00000582594	NEK4	P51957	841 aa		11.7	□□□□□ -0.54
PPP4R1-222	ENST00000582594	ANKRD44	Q8N8A2	993 aa		11.7	□□□□□ -0.54
PPP4R1-222	ENST00000582594	CEP85	Q6P2H3	762 aa		11.7	□□□□□ -0.54
PPP4R1-222	ENST00000582594	CFAP44	Q96MT7	982 aa		11.7	□□□□□ -0.54
PPP4R1-222	ENST00000582594	ABCC3	O15438	1527 aa		11.7	□□□□□ -0.54
PPP4R1-222	ENST00000582594	TERF1	P54274	439 aa		11.7	□□□□□ -0.54
PPP4R1-222	ENST00000582594	JARID2	Q92833	1246 aa	Predicted RBP	11.7	□□□□□ -0.54
PPP4R1-222	ENST00000582594	MEIS3	Q99687	375 aa		11.7	□□□□□ -0.54
PPP4R1-222	ENST00000582594	ZFYVE9	O95405	1425 aa		11.7	□□□□□ -0.54
PPP4R1-222	ENST00000582594	MAP2	P11137	1827 aa	Known RBP	11.69	□□□□□ -0.54
PPP4R1-222	ENST00000582594	YTHDC2	Q9H6S0	1430 aa	Known RBP	11.69	□□□□□ -0.54
PPP4R1-222	ENST00000582594	RRS1	Q15050	365 aa	Known RBP	11.69	□□□□□ -0.54
PPP4R1-222	ENST00000582594	GDPD2	Q9HCC8	539 aa		11.69	□□□□□ -0.54
PPP4R1-222	ENST00000582594	CCDC39	Q9UFE4	941 aa		11.69	□□□□□ -0.54
PPP4R1-222	ENST00000582594	KIF20B	Q96Q89	1820 aa		11.69	□□□□□ -0.54
PPP4R1-222	ENST00000582594	PTPRM	P28827	1452 aa		11.69	□□□□□ -0.54
PPP4R1-222	ENST00000582594	IL13	P35225	146 aa		11.69	□□□□□ -0.54
PPP4R1-222	ENST00000582594	ERC2	O15083	957 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	REC8	O95072	547 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	CYB5RL	Q6IPT4	315 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	WAPL	Q7Z5K2	1190 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	NME9	Q86XW9	330 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	TMX3	Q96JJ7	454 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	MSH6	P52701	1360 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	ZNF830	Q96NB3	372 aa	Predicted RBP	11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	PRDM10	Q9NQV6	1147 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	HECW2	Q9P2P5	1572 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	ATP10D	Q9P241	1426 aa		11.68	□□□□□ -0.54
PPP4R1-222	ENST00000582594	DNTTIP2	Q5QJE6	756 aa	Known RBP	11.67	□□□□□ -0.54
PPP4R1-222	ENST00000582594	DLG5	Q8TDM6	1919 aa		11.67	□□□□□ -0.54
PPP4R1-222	ENST00000582594	CSPP1	Q1MSJ5	1256 aa		11.67	□□□□□ -0.54
PPP4R1-222	ENST00000582594	TSC1	Q92574	1164 aa		11.67	□□□□□ -0.54
PPP4R1-222	ENST00000582594	RIMS2	Q9UQ26	1411 aa		11.67	□□□□□ -0.54
PPP4R1-222	ENST00000582594	MYO5B	Q9ULV0	1848 aa		11.67	□□□□□ -0.54
PPP4R1-222	ENST00000582594	TSPY26P	Q9H489	355 aa		11.67	□□□□□ -0.54
PPP4R1-222	ENST00000582594	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
PPP4R1-222	ENST00000582594	CDC42BPG	Q6DT37	1551 aa		11.66	□□□□□ -0.54
PPP4R1-222	ENST00000582594	GADD45B	O75293	160 aa	Predicted RBP	11.66	□□□□□ -0.54
PPP4R1-222	ENST00000582594	RAPGEF3	O95398	923 aa		11.66	□□□□□ -0.54
PPP4R1-222	ENST00000582594	SLC4A10	Q6U841	1118 aa		11.66	□□□□□ -0.54
PPP4R1-222	ENST00000582594	SASS6	Q6UVJ0	657 aa		11.66	□□□□□ -0.54
PPP4R1-222	ENST00000582594	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.66	□□□□□ -0.54
PPP4R1-222	ENST00000582594	PALD1	Q9ULE6	856 aa		11.66	□□□□□ -0.54
PPP4R1-222	ENST00000582594	MAP7D2	Q96T17	732 aa		11.66	□□□□□ -0.54
PPP4R1-222	ENST00000582594	RTL1	A6NKG5	1358 aa		11.66	□□□□□ -0.54
PPP4R1-222	ENST00000582594	PIK3C2B	O00750	1634 aa		11.65	□□□□□ -0.54
PPP4R1-222	ENST00000582594	POGZ	Q7Z3K3	1410 aa		11.65	□□□□□ -0.54
PPP4R1-222	ENST00000582594	MCM10	Q7L590	875 aa		11.65	□□□□□ -0.54
PPP4R1-222	ENST00000582594	MBD3	O95983	291 aa		11.65	□□□□□ -0.54
PPP4R1-222	ENST00000582594	LMOD3	Q0VAK6	560 aa		11.65	□□□□□ -0.54
PPP4R1-222	ENST00000582594	AEBP1	Q8IUX7	1158 aa		11.65	□□□□□ -0.54
PPP4R1-222	ENST00000582594	EXOC6B	Q9Y2D4	811 aa		11.65	□□□□□ -0.54
PPP4R1-222	ENST00000582594	DYNC1I1	O14576	645 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	C17orf53	Q8N3J3	647 aa	Predicted RBP	11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	MIS18A	Q9NYP9	233 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	PRDM4	Q9UKN5	801 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	FAM177B	A6PVY3	158 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594		F6X3S4	739 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	BRD1	O95696	1058 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	PDE1A	P54750	535 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	RILPL2	Q969X0	211 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	UPF3B	Q9BZI7	483 aa	Known RBP	11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	NCKAP5L	Q9HCH0	1330 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	MCM5	P33992	734 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	KIAA2012	Q0VF49	1180 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	ANO2	Q9NQ90	1003 aa		11.64	□□□□□ -0.55
PPP4R1-222	ENST00000582594	RGS12	O14924	1447 aa		11.63	□□□□□ -0.55
PPP4R1-222	ENST00000582594	TRIM6-TRIM34	B2RNG4	842 aa		11.63	□□□□□ -0.55
PPP4R1-222	ENST00000582594	SLC4A2	P04920	1241 aa		11.63	□□□□□ -0.55
PPP4R1-222	ENST00000582594	KIF24	Q5T7B8	1368 aa		11.62	□□□□□ -0.55
PPP4R1-222	ENST00000582594	USP25	Q9UHP3	1055 aa		11.62	□□□□□ -0.55
PPP4R1-222	ENST00000582594	CLTC	Q00610	1675 aa	Known RBP	11.62	□□□□□ -0.55
PPP4R1-222	ENST00000582594	YEATS2	Q9ULM3	1422 aa		11.62	□□□□□ -0.55
PPP4R1-222	ENST00000582594	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.62	□□□□□ -0.55
PPP4R1-222	ENST00000582594	G2E3	Q7L622	706 aa		11.62	□□□□□ -0.55
PPP4R1-222	ENST00000582594	USP48	Q86UV5	1035 aa		11.62	□□□□□ -0.55
PPP4R1-222	ENST00000582594	ESYT1	Q9BSJ8	1104 aa		11.62	□□□□□ -0.55
PPP4R1-222	ENST00000582594	STAG3	Q9UJ98	1225 aa		11.62	□□□□□ -0.55
PPP4R1-222	ENST00000582594	DTNB	O60941	627 aa		11.61	□□□□□ -0.55
PPP4R1-222	ENST00000582594	SULT6B1	Q6IMI4	303 aa		11.61	□□□□□ -0.55
PPP4R1-222	ENST00000582594	TTC12	Q9H892	705 aa	Predicted RBP	11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms