RNA–Protein interactions for RNA: ENST00000582453.5

MSI2-215, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 496 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-215	ENST00000582453	SCTR	P47872	440 aa		6.31	□□□□□ -1.4
MSI2-215	ENST00000582453	RELB	Q01201	579 aa		6.31	□□□□□ -1.4
MSI2-215	ENST00000582453	TSGA10IP	Q3SY00	556 aa		6.31	□□□□□ -1.4
MSI2-215	ENST00000582453	ERICH6	Q7L0X2	663 aa		6.31	□□□□□ -1.4
MSI2-215	ENST00000582453	CYP2U1	Q7Z449	544 aa		6.31	□□□□□ -1.4
MSI2-215	ENST00000582453	CALR3	Q96L12	384 aa	Known RBP	6.31	□□□□□ -1.4
MSI2-215	ENST00000582453	AGBL1	Q96MI9	1066 aa		6.31	□□□□□ -1.4
MSI2-215	ENST00000582453	ATP5J2-PTCD1	G3V325	749 aa		6.3	□□□□□ -1.4
MSI2-215	ENST00000582453	SKI	P12755	728 aa		6.3	□□□□□ -1.4
MSI2-215	ENST00000582453	OXLD1	Q5BKU9	147 aa		6.3	□□□□□ -1.4
MSI2-215	ENST00000582453	C14orf37	Q86TY3	774 aa		6.3	□□□□□ -1.4
MSI2-215	ENST00000582453	KDF1	Q8NAX2	398 aa	Predicted RBP	6.3	□□□□□ -1.4
MSI2-215	ENST00000582453	UCN2	Q96RP3	112 aa		6.3	□□□□□ -1.4
MSI2-215	ENST00000582453	OSBPL3	Q9H4L5	887 aa		6.3	□□□□□ -1.4
MSI2-215	ENST00000582453	ZNF777	Q9ULD5	760 aa	Predicted RBP	6.29	□□□□□ -1.4
MSI2-215	ENST00000582453	TIMELESS	Q9UNS1	1208 aa		6.29	□□□□□ -1.4
MSI2-215	ENST00000582453	SOS2	Q07890	1332 aa	Predicted RBP	6.28	□□□□□ -1.4
MSI2-215	ENST00000582453	USP17L5	A8MUK1	530 aa		6.28	□□□□□ -1.4
MSI2-215	ENST00000582453	ATP9B	O43861	1147 aa		6.28	□□□□□ -1.4
MSI2-215	ENST00000582453	GNRH1	P01148	92 aa		6.28	□□□□□ -1.4
MSI2-215	ENST00000582453	SNRPB	P14678	240 aa	Known RBP	6.28	□□□□□ -1.4
MSI2-215	ENST00000582453	EML3	Q32P44	896 aa		6.28	□□□□□ -1.4
MSI2-215	ENST00000582453	PLEKHM2	Q8IWE5	1019 aa		6.28	□□□□□ -1.4
MSI2-215	ENST00000582453	ZNF395	Q9H8N7	513 aa	Predicted RBP	6.28	□□□□□ -1.4
MSI2-215	ENST00000582453	TTLL8	A6PVC2	850 aa		6.27	□□□□□ -1.41
MSI2-215	ENST00000582453	TBC1D9	Q6ZT07	1266 aa		6.27	□□□□□ -1.41
MSI2-215	ENST00000582453	INSM2	Q96T92	566 aa	Predicted RBP	6.27	□□□□□ -1.41
MSI2-215	ENST00000582453	NOD1	Q9Y239	953 aa		6.27	□□□□□ -1.41
MSI2-215	ENST00000582453		A0A1W2PRU2	124 aa		6.26	□□□□□ -1.41
MSI2-215	ENST00000582453	USP17L3	A6NCW0	530 aa		6.26	□□□□□ -1.41
MSI2-215	ENST00000582453	USP17L4	A6NCW7	530 aa		6.26	□□□□□ -1.41
MSI2-215	ENST00000582453	MAN1A2	O60476	641 aa		6.26	□□□□□ -1.41
MSI2-215	ENST00000582453	CLN3	Q13286	438 aa		6.26	□□□□□ -1.41
MSI2-215	ENST00000582453	NCOA4	Q13772	614 aa		6.26	□□□□□ -1.41
MSI2-215	ENST00000582453	USP17L2	Q6R6M4	530 aa		6.26	□□□□□ -1.41
MSI2-215	ENST00000582453	USP17L1	Q7RTZ2	530 aa		6.26	□□□□□ -1.41
MSI2-215	ENST00000582453	ARHGEF10L	Q9HCE6	1279 aa		6.26	□□□□□ -1.41
MSI2-215	ENST00000582453	PALM3	A6NDB9	673 aa	Predicted RBP	6.25	□□□□□ -1.41
MSI2-215	ENST00000582453	GPC1	P35052	558 aa		6.25	□□□□□ -1.41
MSI2-215	ENST00000582453	CTSO	P43234	321 aa	Predicted RBP	6.25	□□□□□ -1.41
MSI2-215	ENST00000582453	DEPDC4	Q8N2C3	294 aa		6.25	□□□□□ -1.41
MSI2-215	ENST00000582453	PPP1R12C	Q9BZL4	782 aa		6.25	□□□□□ -1.41
MSI2-215	ENST00000582453	POLM	Q9NP87	494 aa	Predicted RBP	6.25	□□□□□ -1.41
MSI2-215	ENST00000582453	TFIP11	Q9UBB9	837 aa	Known RBP	6.25	□□□□□ -1.41
MSI2-215	ENST00000582453	DNMT3L	Q9UJW3	386 aa		6.25	□□□□□ -1.41
MSI2-215	ENST00000582453	MEN1	O00255	615 aa		6.24	□□□□□ -1.41
MSI2-215	ENST00000582453	RNF144A	P50876	292 aa	Predicted RBP	6.24	□□□□□ -1.41
MSI2-215	ENST00000582453	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	6.24	□□□□□ -1.41
MSI2-215	ENST00000582453	ESCO1	Q5FWF5	840 aa		6.24	□□□□□ -1.41
MSI2-215	ENST00000582453	FOXD4L5	Q5VV16	416 aa	Predicted RBP	6.24	□□□□□ -1.41
MSI2-215	ENST00000582453	TRIM50	Q86XT4	487 aa		6.24	□□□□□ -1.41
MSI2-215	ENST00000582453	RNF217	Q8TC41	542 aa		6.24	□□□□□ -1.41
MSI2-215	ENST00000582453	NLRP3	Q96P20	1036 aa		6.24	□□□□□ -1.41
MSI2-215	ENST00000582453	MAFB	Q9Y5Q3	323 aa	Predicted RBP	6.24	□□□□□ -1.41
MSI2-215	ENST00000582453	WASL	O00401	505 aa	Predicted RBP	6.23	□□□□□ -1.41
MSI2-215	ENST00000582453	GTF2I	P78347	998 aa		6.23	□□□□□ -1.41
MSI2-215	ENST00000582453	CNKSR1	Q969H4	720 aa		6.23	□□□□□ -1.41
MSI2-215	ENST00000582453	ESYT1	Q9BSJ8	1104 aa		6.23	□□□□□ -1.41
MSI2-215	ENST00000582453	RAB6B	Q9NRW1	208 aa		6.23	□□□□□ -1.41
MSI2-215	ENST00000582453	PCDHGA11	Q9Y5H2	935 aa		6.23	□□□□□ -1.41
MSI2-215	ENST00000582453	FIGNL2	A6NMB9	653 aa		6.22	□□□□□ -1.41
MSI2-215	ENST00000582453	SOBP	A7XYQ1	873 aa		6.22	□□□□□ -1.41
MSI2-215	ENST00000582453	IL2RA	P01589	272 aa		6.22	□□□□□ -1.41
MSI2-215	ENST00000582453	ATP1A2	P50993	1020 aa		6.22	□□□□□ -1.41
MSI2-215	ENST00000582453	XAGE2	Q96GT9	111 aa		6.22	□□□□□ -1.41
MSI2-215	ENST00000582453	ETNK1	Q9HBU6	452 aa		6.22	□□□□□ -1.41
MSI2-215	ENST00000582453	INHA	P05111	366 aa		6.21	□□□□□ -1.42
MSI2-215	ENST00000582453	SCNN1D	P51172	638 aa		6.21	□□□□□ -1.42
MSI2-215	ENST00000582453	GDF10	P55107	478 aa		6.21	□□□□□ -1.42
MSI2-215	ENST00000582453	SLC27A3	Q5K4L6	730 aa		6.21	□□□□□ -1.42
MSI2-215	ENST00000582453	LYSMD3	Q7Z3D4	306 aa		6.21	□□□□□ -1.42
MSI2-215	ENST00000582453	GRIP2	Q9C0E4	1043 aa		6.21	□□□□□ -1.42
MSI2-215	ENST00000582453	MKRN1	Q9UHC7	482 aa	Known RBP	6.21	□□□□□ -1.42
MSI2-215	ENST00000582453	HRH3	Q9Y5N1	445 aa		6.21	□□□□□ -1.42
MSI2-215	ENST00000582453	LMOD1	P29536	600 aa	Predicted RBP	6.2	□□□□□ -1.42
MSI2-215	ENST00000582453	CENPC	Q03188	943 aa		6.2	□□□□□ -1.42
MSI2-215	ENST00000582453	PSME1	Q06323	249 aa		6.2	□□□□□ -1.42
MSI2-215	ENST00000582453	CFAP70	Q5T0N1	1121 aa		6.2	□□□□□ -1.42
MSI2-215	ENST00000582453	NPAS3	Q8IXF0	933 aa		6.2	□□□□□ -1.42
MSI2-215	ENST00000582453	CCDC97	Q96F63	343 aa	Predicted RBP	6.2	□□□□□ -1.42
MSI2-215	ENST00000582453	NXF1	Q9UBU9	619 aa	Known RBP	6.2	□□□□□ -1.42
MSI2-215	ENST00000582453	SERPINA10	Q9UK55	444 aa		6.2	□□□□□ -1.42
MSI2-215	ENST00000582453	TMEM229A	B2RXF0	380 aa		6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	SPATA31C2	B4DYI2	1134 aa		6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	STAU1	O95793	577 aa	Known RBP	6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	CLDN10	P78369	228 aa		6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	LARGE2	Q8N3Y3	721 aa		6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	OGFOD1	Q8N543	542 aa		6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	ZNF775	Q96BV0	537 aa	Predicted RBP	6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	FHDC1	Q9C0D6	1143 aa	Predicted RBP	6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	DNAAF2	Q9NVR5	837 aa	Known RBP	6.19	□□□□□ -1.42
MSI2-215	ENST00000582453	ARID3C	A6NKF2	412 aa		6.18	□□□□□ -1.42
MSI2-215	ENST00000582453	TERT	O14746	1132 aa	Known RBP	6.18	□□□□□ -1.42
MSI2-215	ENST00000582453	BACH1	O14867	736 aa		6.18	□□□□□ -1.42
MSI2-215	ENST00000582453	ZBTB7B	O15156	539 aa	Predicted RBP	6.18	□□□□□ -1.42
MSI2-215	ENST00000582453	GTF2E1	P29083	439 aa	Predicted RBP	6.18	□□□□□ -1.42
MSI2-215	ENST00000582453	PTS	Q03393	145 aa		6.18	□□□□□ -1.42
MSI2-215	ENST00000582453	TLR1	Q15399	786 aa		6.18	□□□□□ -1.42
MSI2-215	ENST00000582453	WDR44	Q5JSH3	913 aa		6.18	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms