RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 USP17L1Q7RTZ2 530 aa9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 SIRT1Q96EB6 747 aa9.01□□□□□ -0.97
SMCHD1-204ENST00000581226 AXIN1O15169 862 aa9□□□□□ -0.97
SMCHD1-204ENST00000581226 RFX1P22670 979 aa9□□□□□ -0.97
SMCHD1-204ENST00000581226 CFAP70Q5T0N1 1121 aa9□□□□□ -0.97
SMCHD1-204ENST00000581226 PLEKHM2Q8IWE5 1019 aa9□□□□□ -0.97
SMCHD1-204ENST00000581226 SMCPP49901 116 aaPredicted RBP8.99□□□□□ -0.97
SMCHD1-204ENST00000581226 Q6ZVU0 165 aa8.99□□□□□ -0.97
SMCHD1-204ENST00000581226 ARID3AQ99856 593 aa8.99□□□□□ -0.97
SMCHD1-204ENST00000581226 NOD1Q9Y239 953 aa8.99□□□□□ -0.97
SMCHD1-204ENST00000581226 ST8SIA5O15466 376 aa8.98□□□□□ -0.97
SMCHD1-204ENST00000581226 CRIPAKQ8N1N5 446 aa8.98□□□□□ -0.97
SMCHD1-204ENST00000581226 AAASQ9NRG9 546 aa8.98□□□□□ -0.97
SMCHD1-204ENST00000581226 OSBPL3Q9H4L5 887 aa8.97□□□□□ -0.97
SMCHD1-204ENST00000581226 MKRN1Q9UHC7 482 aaKnown RBP8.97□□□□□ -0.97
SMCHD1-204ENST00000581226 POTECB2RU33 542 aa8.96□□□□□ -0.98
SMCHD1-204ENST00000581226 UPP2O95045 317 aa8.96□□□□□ -0.98
SMCHD1-204ENST00000581226 ADH1AP07327 375 aa8.96□□□□□ -0.98
SMCHD1-204ENST00000581226 MEIOBQ8N635 442 aa8.96□□□□□ -0.98
SMCHD1-204ENST00000581226 AGBL1Q96MI9 1066 aa8.96□□□□□ -0.98
SMCHD1-204ENST00000581226 ATP5J2-PTCD1G3V325 749 aa8.95□□□□□ -0.98
SMCHD1-204ENST00000581226 CYP2U1Q7Z449 544 aa8.95□□□□□ -0.98
SMCHD1-204ENST00000581226 TRIM50Q86XT4 487 aa8.95□□□□□ -0.98
SMCHD1-204ENST00000581226 TSEN34Q9BSV6 310 aaKnown RBP8.95□□□□□ -0.98
SMCHD1-204ENST00000581226 VRTNQ9H8Y1 702 aa8.95□□□□□ -0.98
SMCHD1-204ENST00000581226 BMP1P13497 986 aa8.94□□□□□ -0.98
SMCHD1-204ENST00000581226 RELBQ01201 579 aa8.94□□□□□ -0.98
SMCHD1-204ENST00000581226 CDCA8Q53HL2 280 aa8.94□□□□□ -0.98
SMCHD1-204ENST00000581226 KANK4Q5T7N3 995 aaPredicted RBP8.94□□□□□ -0.98
SMCHD1-204ENST00000581226 MRPL14Q6P1L8 145 aaKnown RBP8.94□□□□□ -0.98
SMCHD1-204ENST00000581226 GTF2IP78347 998 aa8.93□□□□□ -0.98
SMCHD1-204ENST00000581226 LINC00528Q8N1L1 170 aa8.93□□□□□ -0.98
SMCHD1-204ENST00000581226 ZNF395Q9H8N7 513 aaPredicted RBP8.93□□□□□ -0.98
SMCHD1-204ENST00000581226 PCDHGA11Q9Y5H2 935 aa8.93□□□□□ -0.98
SMCHD1-204ENST00000581226 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.92□□□□□ -0.98
SMCHD1-204ENST00000581226 BMP2P12643 396 aa8.92□□□□□ -0.98
SMCHD1-204ENST00000581226 RASA1P20936 1047 aa8.92□□□□□ -0.98
SMCHD1-204ENST00000581226 PTGIRP43119 386 aa8.92□□□□□ -0.98
SMCHD1-204ENST00000581226 ATP1A2P50993 1020 aa8.92□□□□□ -0.98
SMCHD1-204ENST00000581226 PSME1Q06323 249 aa8.92□□□□□ -0.98
SMCHD1-204ENST00000581226 C6orf118Q5T5N4 469 aa8.92□□□□□ -0.98
SMCHD1-204ENST00000581226 KDF1Q8NAX2 398 aaPredicted RBP8.92□□□□□ -0.98
SMCHD1-204ENST00000581226 DACH1Q9UI36 760 aa8.92□□□□□ -0.98
SMCHD1-204ENST00000581226 GNRH1P01148 92 aa8.91□□□□□ -0.98
SMCHD1-204ENST00000581226 SCARF1Q14162 830 aa8.91□□□□□ -0.98
SMCHD1-204ENST00000581226 LARP1Q6PKG0 1096 aaKnown RBP8.91□□□□□ -0.98
SMCHD1-204ENST00000581226 TRIM46Q7Z4K8 759 aa8.91□□□□□ -0.98
SMCHD1-204ENST00000581226 OGFOD1Q8N543 542 aa8.91□□□□□ -0.98
SMCHD1-204ENST00000581226 PURBQ96QR8 312 aaKnown RBP8.91□□□□□ -0.98
SMCHD1-204ENST00000581226 ATP13A2Q9NQ11 1180 aa8.91□□□□□ -0.98
SMCHD1-204ENST00000581226 DNAAF2Q9NVR5 837 aaKnown RBP8.91□□□□□ -0.98
SMCHD1-204ENST00000581226 A0A1W2PRU2 124 aa8.9□□□□□ -0.98
SMCHD1-204ENST00000581226 CLDN10P78369 228 aa8.9□□□□□ -0.98
SMCHD1-204ENST00000581226 PBXIP1Q96AQ6 731 aa8.9□□□□□ -0.98
SMCHD1-204ENST00000581226 ARHGEF10LQ9HCE6 1279 aa8.9□□□□□ -0.98
SMCHD1-204ENST00000581226 MEN1O00255 615 aa8.89□□□□□ -0.99
SMCHD1-204ENST00000581226 ZBTB7BO15156 539 aaPredicted RBP8.89□□□□□ -0.99
SMCHD1-204ENST00000581226 STAU1O95793 577 aaKnown RBP8.89□□□□□ -0.99
SMCHD1-204ENST00000581226 SRPK2P78362 688 aaKnown RBP8.89□□□□□ -0.99
SMCHD1-204ENST00000581226 LARGE2Q8N3Y3 721 aa8.89□□□□□ -0.99
SMCHD1-204ENST00000581226 ZNF594Q96JF6 807 aaPredicted RBP8.89□□□□□ -0.99
SMCHD1-204ENST00000581226 ZFP42Q96MM3 310 aa8.89□□□□□ -0.99
SMCHD1-204ENST00000581226 RAB6BQ9NRW1 208 aa8.89□□□□□ -0.99
SMCHD1-204ENST00000581226 SPINT1O43278 529 aa8.88□□□□□ -0.99
SMCHD1-204ENST00000581226 CRTC2Q53ET0 693 aaPredicted RBP8.88□□□□□ -0.99
SMCHD1-204ENST00000581226 ESCO1Q5FWF5 840 aa8.88□□□□□ -0.99
SMCHD1-204ENST00000581226 INSM2Q96T92 566 aaPredicted RBP8.88□□□□□ -0.99
SMCHD1-204ENST00000581226 ETNK1Q9HBU6 452 aa8.88□□□□□ -0.99
SMCHD1-204ENST00000581226 KIAA1024Q9UPX6 916 aa8.88□□□□□ -0.99
SMCHD1-204ENST00000581226 SCNN1DP51172 638 aa8.87□□□□□ -0.99
SMCHD1-204ENST00000581226 GDF10P55107 478 aa8.87□□□□□ -0.99
SMCHD1-204ENST00000581226 CCDC102BQ68D86 513 aa8.87□□□□□ -0.99
SMCHD1-204ENST00000581226 TPCN2Q8NHX9 752 aa8.87□□□□□ -0.99
SMCHD1-204ENST00000581226 NLRP3Q96P20 1036 aa8.87□□□□□ -0.99
SMCHD1-204ENST00000581226 POLMQ9NP87 494 aaPredicted RBP8.87□□□□□ -0.99
SMCHD1-204ENST00000581226 RBM19Q9Y4C8 960 aaKnown RBP8.87□□□□□ -0.99
SMCHD1-204ENST00000581226 FAM196BA6NMK8 535 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L15C9J2P7 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L10C9JJH3 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L13C9JLJ4 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L12C9JPN9 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L11C9JVI0 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L21D6R901 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L18D6R9N7 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L22D6RA61 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L17D6RBQ6 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L19D6RCP7 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L20D6RJB6 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 PPP1R15AO75807 674 aaPredicted RBP8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 INHAP05111 366 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 USP17L24Q0WX57 530 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 CLN3Q13286 438 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 PTK7Q13308 1070 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 CNKSR1Q969H4 720 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 XAGE2Q96GT9 111 aa8.86□□□□□ -0.99
SMCHD1-204ENST00000581226 ACIN1Q9UKV3 1341 aaKnown RBP8.85□□□□□ -0.99
SMCHD1-204ENST00000581226 IL2RAP01589 272 aa8.85□□□□□ -0.99
SMCHD1-204ENST00000581226 CTSOP43234 321 aaPredicted RBP8.85□□□□□ -0.99
SMCHD1-204ENST00000581226 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.85□□□□□ -0.99
SMCHD1-204ENST00000581226 ESYT1Q9BSJ8 1104 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms