RNA–Protein interactions for RNA: ENST00000580541.1

SKA2-205, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3 BASIC

Gene SKA2, Length 689 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-205ENST00000580541 RUNDC1Q96C34 613 aa18.9■□□□□ 0.62
SKA2-205ENST00000580541 NCAPD2Q15021 1401 aa18.9■□□□□ 0.62
SKA2-205ENST00000580541 RGPD1P0DJD0 1748 aa18.89■□□□□ 0.61
SKA2-205ENST00000580541 RGPD2P0DJD1 1756 aa18.89■□□□□ 0.61
SKA2-205ENST00000580541 EXOC5O00471 708 aa18.89■□□□□ 0.61
SKA2-205ENST00000580541 AEBP1Q8IUX7 1158 aa18.89■□□□□ 0.61
SKA2-205ENST00000580541 A0A0G2JS52 829 aa18.87■□□□□ 0.61
SKA2-205ENST00000580541 ONECUT3O60422 494 aaPredicted RBP18.87■□□□□ 0.61
SKA2-205ENST00000580541 MYT1Q01538 1121 aa18.87■□□□□ 0.61
SKA2-205ENST00000580541 FAM98CQ17RN3 349 aaKnown RBP18.87■□□□□ 0.61
SKA2-205ENST00000580541 GAS2L2Q8NHY3 880 aa18.87■□□□□ 0.61
SKA2-205ENST00000580541 ZCRB1Q8TBF4 217 aaKnown RBP18.87■□□□□ 0.61
SKA2-205ENST00000580541 NGEFQ8N5V2 710 aa18.86■□□□□ 0.61
SKA2-205ENST00000580541 PLEKHF1Q96S99 279 aa18.86■□□□□ 0.61
SKA2-205ENST00000580541 DDB1Q16531 1140 aa18.85■□□□□ 0.61
SKA2-205ENST00000580541 C1orf141Q5JVX7 400 aa18.84■□□□□ 0.61
SKA2-205ENST00000580541 RGS17Q9UGC6 210 aaPredicted RBP18.84■□□□□ 0.61
SKA2-205ENST00000580541 HSP90AB1P08238 724 aaKnown RBP18.83■□□□□ 0.6
SKA2-205ENST00000580541 PDE3BQ13370 1112 aa18.83■□□□□ 0.6
SKA2-205ENST00000580541 CCDC146Q8IYE0 955 aa18.83■□□□□ 0.6
SKA2-205ENST00000580541 PCDH11XQ9BZA7 1347 aa18.82■□□□□ 0.6
SKA2-205ENST00000580541 PCDH11YQ9BZA8 1340 aa18.82■□□□□ 0.6
SKA2-205ENST00000580541 IFNL2Q8IZJ0 200 aa18.82■□□□□ 0.6
SKA2-205ENST00000580541 OVOS2A0A0G2JMS6 1433 aa18.82■□□□□ 0.6
SKA2-205ENST00000580541 PARP4Q9UKK3 1724 aaKnown RBP18.81■□□□□ 0.6
SKA2-205ENST00000580541 LMOD3Q0VAK6 560 aa18.81■□□□□ 0.6
SKA2-205ENST00000580541 NFE2L2Q16236 605 aa18.81■□□□□ 0.6
SKA2-205ENST00000580541 NCBP3Q53F19 620 aaKnown RBP18.81■□□□□ 0.6
SKA2-205ENST00000580541 SEPT12Q8IYM1 358 aa18.81■□□□□ 0.6
SKA2-205ENST00000580541 RTF1Q92541 710 aaKnown RBP18.81■□□□□ 0.6
SKA2-205ENST00000580541 PHACTR3Q96KR7 559 aa18.81■□□□□ 0.6
SKA2-205ENST00000580541 DISP2A7MBM2 1401 aa18.81■□□□□ 0.6
SKA2-205ENST00000580541 HTATSF1O43719 755 aaKnown RBP18.8■□□□□ 0.6
SKA2-205ENST00000580541 MTHFSDQ2M296 383 aaKnown RBP18.8■□□□□ 0.6
SKA2-205ENST00000580541 AKAP4Q5JQC9 854 aa18.8■□□□□ 0.6
SKA2-205ENST00000580541 ZNF530Q6P9A1 599 aaPredicted RBP18.8■□□□□ 0.6
SKA2-205ENST00000580541 POTEAQ6S8J7 498 aa18.8■□□□□ 0.6
SKA2-205ENST00000580541 MEGF6O75095 1541 aa18.79■□□□□ 0.6
SKA2-205ENST00000580541 GNAT3A8MTJ3 354 aa18.79■□□□□ 0.6
SKA2-205ENST00000580541 APAF1O14727 1248 aa18.79■□□□□ 0.6
SKA2-205ENST00000580541 TMPOP42166 694 aaKnown RBP18.79■□□□□ 0.6
SKA2-205ENST00000580541 DDX54Q8TDD1 881 aaKnown RBP18.79■□□□□ 0.6
SKA2-205ENST00000580541 GLI3P10071 1580 aa18.78■□□□□ 0.6
SKA2-205ENST00000580541 RIPK4P57078 832 aa18.78■□□□□ 0.6
SKA2-205ENST00000580541 NEUROD2Q15784 382 aa18.76■□□□□ 0.59
SKA2-205ENST00000580541 TNS2Q63HR2 1409 aa18.75■□□□□ 0.59
SKA2-205ENST00000580541 PHKG2P15735 406 aa18.75■□□□□ 0.59
SKA2-205ENST00000580541 CALD1Q05682 793 aaKnown RBP18.75■□□□□ 0.59
SKA2-205ENST00000580541 DCAF5Q96JK2 942 aa18.75■□□□□ 0.59
SKA2-205ENST00000580541 WNK3Q9BYP7 1800 aa18.74■□□□□ 0.59
SKA2-205ENST00000580541 NKX1-1Q15270 411 aaPredicted RBP18.74■□□□□ 0.59
SKA2-205ENST00000580541 CCDC27Q2M243 656 aa18.74■□□□□ 0.59
SKA2-205ENST00000580541 KRT27Q7Z3Y8 459 aa18.74■□□□□ 0.59
SKA2-205ENST00000580541 MAP3K5Q99683 1374 aa18.73■□□□□ 0.59
SKA2-205ENST00000580541 CYP27B1O15528 508 aa18.73■□□□□ 0.59
SKA2-205ENST00000580541 PKD1L3Q7Z443 1732 aa18.72■□□□□ 0.59
SKA2-205ENST00000580541 THSD7AQ9UPZ6 1657 aa18.72■□□□□ 0.59
SKA2-205ENST00000580541 HNRNPUQ00839 825 aaKnown RBP eCLIP18.71■□□□□ 0.59
SKA2-205ENST00000580541 FAM196AQ6ZSG2 479 aa18.71■□□□□ 0.59
SKA2-205ENST00000580541 RRP7AQ9Y3A4 280 aaKnown RBP18.71■□□□□ 0.59
SKA2-205ENST00000580541 KAT6BQ8WYB5 2073 aa18.7■□□□□ 0.58
SKA2-205ENST00000580541 ERVV-2B6SEH9 535 aa18.7■□□□□ 0.58
SKA2-205ENST00000580541 MARCH10Q8NA82 808 aaPredicted RBP18.7■□□□□ 0.58
SKA2-205ENST00000580541 TEFQ10587 303 aa18.69■□□□□ 0.58
SKA2-205ENST00000580541 MPRIPQ6WCQ1 1025 aa18.69■□□□□ 0.58
SKA2-205ENST00000580541 LRRC37A3O60309 1634 aa18.68■□□□□ 0.58
SKA2-205ENST00000580541 RNMTO43148 476 aaKnown RBP18.68■□□□□ 0.58
SKA2-205ENST00000580541 WDR63Q8IWG1 891 aa18.68■□□□□ 0.58
SKA2-205ENST00000580541 SALL2Q9Y467 1007 aaPredicted RBP18.68■□□□□ 0.58
SKA2-205ENST00000580541 CABP4P57796 275 aa18.67■□□□□ 0.58
SKA2-205ENST00000580541 WWC1Q8IX03 1113 aa18.67■□□□□ 0.58
SKA2-205ENST00000580541 IL17REQ8NFR9 667 aa18.66■□□□□ 0.58
SKA2-205ENST00000580541 TRIM35Q9UPQ4 493 aa18.66■□□□□ 0.58
SKA2-205ENST00000580541 BCL9O00512 1426 aa18.66■□□□□ 0.58
SKA2-205ENST00000580541 DLG5Q8TDM6 1919 aa18.65■□□□□ 0.58
SKA2-205ENST00000580541 MCM10Q7L590 875 aa18.65■□□□□ 0.58
SKA2-205ENST00000580541 LGR6Q9HBX8 967 aa18.65■□□□□ 0.58
SKA2-205ENST00000580541 BABAM1Q9NWV8 329 aa18.65■□□□□ 0.58
SKA2-205ENST00000580541 RGS12O14924 1447 aa18.65■□□□□ 0.58
SKA2-205ENST00000580541 TAF7Q15545 349 aaPredicted RBP18.64■□□□□ 0.57
SKA2-205ENST00000580541 TMOD3Q9NYL9 352 aa18.64■□□□□ 0.57
SKA2-205ENST00000580541 SLC52A2Q9HAB3 445 aa18.63■□□□□ 0.57
SKA2-205ENST00000580541 IL16Q14005 1332 aa18.63■□□□□ 0.57
SKA2-205ENST00000580541 CEMIPQ8WUJ3 1361 aa18.63■□□□□ 0.57
SKA2-205ENST00000580541 PRIM1P49642 420 aaKnown RBP18.62■□□□□ 0.57
SKA2-205ENST00000580541 GNAI1P63096 354 aa18.62■□□□□ 0.57
SKA2-205ENST00000580541 GOLGA2Q08379 1002 aa18.62■□□□□ 0.57
SKA2-205ENST00000580541 DCTN1Q14203 1278 aa18.62■□□□□ 0.57
SKA2-205ENST00000580541 NFATC2IPQ8NCF5 419 aa18.62■□□□□ 0.57
SKA2-205ENST00000580541 SYTL4Q96C24 671 aaPredicted RBP18.62■□□□□ 0.57
SKA2-205ENST00000580541 SHANK3Q9BYB0 1731 aa18.62■□□□□ 0.57
SKA2-205ENST00000580541 BRWD3Q6RI45 1802 aa18.62■□□□□ 0.57
SKA2-205ENST00000580541 ZBED9Q6R2W3 1325 aa18.61■□□□□ 0.57
SKA2-205ENST00000580541 CFAP44Q96MT7 982 aa18.6■□□□□ 0.57
SKA2-205ENST00000580541 IFT57Q9NWB7 429 aa18.6■□□□□ 0.57
SKA2-205ENST00000580541 SCN11AQ9UI33 1791 aa18.6■□□□□ 0.57
SKA2-205ENST00000580541 KDM6AO15550 1401 aaPredicted RBP18.59■□□□□ 0.57
SKA2-205ENST00000580541 SENP3-EIF4A1A0A087X0R7 540 aa18.59■□□□□ 0.57
SKA2-205ENST00000580541 BTBD11A6QL63 1104 aa18.59■□□□□ 0.57
SKA2-205ENST00000580541 HMGB2P26583 209 aaKnown RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms