RNA–Protein interactions for RNA: ENST00000579853.5

CDK5RAP3-216, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-216ENST00000579853 PRIM1P49642 420 aaKnown RBP17.33■□□□□ 0.36
CDK5RAP3-216ENST00000579853 PUS7Q96PZ0 661 aaKnown RBP17.33■□□□□ 0.36
CDK5RAP3-216ENST00000579853 MAPK8IP2Q13387 824 aaPredicted RBP17.32■□□□□ 0.36
CDK5RAP3-216ENST00000579853 NLGN2Q8NFZ4 835 aa17.32■□□□□ 0.36
CDK5RAP3-216ENST00000579853 PPP4R3CPQ6ZMV5 832 aa17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 ZCRB1Q8TBF4 217 aaKnown RBP17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 SLC12A5Q9H2X9 1139 aa17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 CCNL1Q9UK58 526 aaPredicted RBP17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 TUBGCP6Q96RT7 1819 aa17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 LY75O60449 1722 aa17.3■□□□□ 0.36
CDK5RAP3-216ENST00000579853 SHANK3Q9BYB0 1731 aa17.3■□□□□ 0.36
CDK5RAP3-216ENST00000579853 CARD11Q9BXL7 1154 aa17.3■□□□□ 0.36
CDK5RAP3-216ENST00000579853 NEUROD1Q13562 356 aa17.29■□□□□ 0.36
CDK5RAP3-216ENST00000579853 LTV1Q96GA3 475 aaPredicted RBP17.29■□□□□ 0.36
CDK5RAP3-216ENST00000579853 SIN3AQ96ST3 1273 aa17.29■□□□□ 0.36
CDK5RAP3-216ENST00000579853 A0A1W2PP64 1363 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 USP47Q96K76 1375 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 CGNL1Q0VF96 1302 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 FLAD1Q8NFF5 587 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 COG3Q96JB2 828 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 DOT1LQ8TEK3 1739 aa17.27■□□□□ 0.36
CDK5RAP3-216ENST00000579853 YBX3P16989 372 aaKnown RBP eCLIP17.27■□□□□ 0.36
CDK5RAP3-216ENST00000579853 AMPHP49418 695 aa17.27■□□□□ 0.36
CDK5RAP3-216ENST00000579853 KCNQ4P56696 695 aa17.27■□□□□ 0.36
CDK5RAP3-216ENST00000579853 NSD2O96028 1365 aa17.27■□□□□ 0.35
CDK5RAP3-216ENST00000579853 SLC24A1O60721 1099 aa17.26■□□□□ 0.35
CDK5RAP3-216ENST00000579853 HOXC9P31274 260 aa17.26■□□□□ 0.35
CDK5RAP3-216ENST00000579853 CD2APQ9Y5K6 639 aa17.26■□□□□ 0.35
CDK5RAP3-216ENST00000579853 MAP3K19Q56UN5 1328 aa17.25■□□□□ 0.35
CDK5RAP3-216ENST00000579853 COL23A1Q86Y22 540 aaPredicted RBP17.25■□□□□ 0.35
CDK5RAP3-216ENST00000579853 ATP10DQ9P241 1426 aa17.24■□□□□ 0.35
CDK5RAP3-216ENST00000579853 GPBP1L1Q9HC44 474 aaPredicted RBP17.24■□□□□ 0.35
CDK5RAP3-216ENST00000579853 RTL1A6NKG5 1358 aa17.23■□□□□ 0.35
CDK5RAP3-216ENST00000579853 RAPGEF4Q8WZA2 1011 aa17.22■□□□□ 0.35
CDK5RAP3-216ENST00000579853 MEGF6O75095 1541 aa17.21■□□□□ 0.35
CDK5RAP3-216ENST00000579853 SMG6Q86US8 1419 aaKnown RBP17.21■□□□□ 0.34
CDK5RAP3-216ENST00000579853 MSL1Q68DK7 614 aa17.2■□□□□ 0.34
CDK5RAP3-216ENST00000579853 TATP17735 454 aaPredicted RBP17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 NBPF6Q5VWK0 638 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 NBPF4Q96M43 638 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 C5P01031 1676 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 PCDH11XQ9BZA7 1347 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 PCDH11YQ9BZA8 1340 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 RGPD2P0DJD1 1756 aa17.18■□□□□ 0.34
CDK5RAP3-216ENST00000579853 HSPA6P17066 643 aa17.18■□□□□ 0.34
CDK5RAP3-216ENST00000579853 SMARCC1Q92922 1105 aaPredicted RBP17.18■□□□□ 0.34
CDK5RAP3-216ENST00000579853 NSD3Q9BZ95 1437 aa17.18■□□□□ 0.34
CDK5RAP3-216ENST00000579853 ADCY9O60503 1353 aa17.17■□□□□ 0.34
CDK5RAP3-216ENST00000579853 PALLDQ8WX93 1383 aa17.17■□□□□ 0.34
CDK5RAP3-216ENST00000579853 AK7Q96M32 723 aa17.16■□□□□ 0.34
CDK5RAP3-216ENST00000579853 TAF1LQ8IZX4 1826 aa17.15■□□□□ 0.34
CDK5RAP3-216ENST00000579853 FBLN1P23142 703 aa17.14■□□□□ 0.33
CDK5RAP3-216ENST00000579853 RRS1Q15050 365 aaKnown RBP17.14■□□□□ 0.33
CDK5RAP3-216ENST00000579853 MPRIPQ6WCQ1 1025 aa17.14■□□□□ 0.33
CDK5RAP3-216ENST00000579853 KIF24Q5T7B8 1368 aa17.14■□□□□ 0.33
CDK5RAP3-216ENST00000579853 USHBP1Q8N6Y0 703 aa17.13■□□□□ 0.33
CDK5RAP3-216ENST00000579853 TESK2Q96S53 571 aa17.13■□□□□ 0.33
CDK5RAP3-216ENST00000579853 IGSF1Q8N6C5 1336 aa17.13■□□□□ 0.33
CDK5RAP3-216ENST00000579853 INSRP06213 1382 aa17.13■□□□□ 0.33
CDK5RAP3-216ENST00000579853 ZNF526Q8TF50 670 aaPredicted RBP17.12■□□□□ 0.33
CDK5RAP3-216ENST00000579853 TONSLQ96HA7 1378 aa17.12■□□□□ 0.33
CDK5RAP3-216ENST00000579853 C4BP0C0L5 1744 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 ST20-MTHFSA0A0A6YYL1 179 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 FYB1O15117 783 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 SSFA2P28290 1259 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 FLT4P35916 1363 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.1■□□□□ 0.33
CDK5RAP3-216ENST00000579853 GGNBP2Q9H3C7 697 aa17.1■□□□□ 0.33
CDK5RAP3-216ENST00000579853 CYP27B1O15528 508 aa17.09■□□□□ 0.33
CDK5RAP3-216ENST00000579853 UBR3Q6ZT12 1888 aa17.09■□□□□ 0.33
CDK5RAP3-216ENST00000579853 PHF14O94880 888 aa17.08■□□□□ 0.32
CDK5RAP3-216ENST00000579853 HSP90AB2PQ58FF8 381 aa17.08■□□□□ 0.32
CDK5RAP3-216ENST00000579853 PCNTO95613 3336 aa17.08■□□□□ 0.32
CDK5RAP3-216ENST00000579853 ITGB4P16144 1822 aa17.07■□□□□ 0.32
CDK5RAP3-216ENST00000579853 NKX1-1Q15270 411 aaPredicted RBP17.07■□□□□ 0.32
CDK5RAP3-216ENST00000579853 KIF3CO14782 793 aa17.06■□□□□ 0.32
CDK5RAP3-216ENST00000579853 APLP1P51693 650 aa17.06■□□□□ 0.32
CDK5RAP3-216ENST00000579853 PIGBQ92521 554 aa17.06■□□□□ 0.32
CDK5RAP3-216ENST00000579853 SPG7Q9UQ90 795 aa17.06■□□□□ 0.32
CDK5RAP3-216ENST00000579853 LOC102724428A0A0B4J2F2 783 aa17.05■□□□□ 0.32
CDK5RAP3-216ENST00000579853 SIK1P57059 783 aa17.05■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TMF1P82094 1093 aa17.05■□□□□ 0.32
CDK5RAP3-216ENST00000579853 CDCA8Q53HL2 280 aa17.05■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TOGARAM1Q9Y4F4 1720 aa17.04■□□□□ 0.32
CDK5RAP3-216ENST00000579853 AMIGO3Q86WK7 504 aa17.04■□□□□ 0.32
CDK5RAP3-216ENST00000579853 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.04■□□□□ 0.323e-16■■□□□ 12.1
CDK5RAP3-216ENST00000579853 PKD1L3Q7Z443 1732 aa17.04■□□□□ 0.32
CDK5RAP3-216ENST00000579853 CICQ96RK0 1608 aaPredicted RBP17.03■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TOMM70O94826 608 aa17.03■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TGFB2P61812 414 aa17.03■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TMOD3Q9NYL9 352 aa17.03■□□□□ 0.32
CDK5RAP3-216ENST00000579853 GNPATO15228 680 aa17.02■□□□□ 0.32
CDK5RAP3-216ENST00000579853 LINC00116Q8NCU8 138 aa17.02■□□□□ 0.32
CDK5RAP3-216ENST00000579853 WWC3Q9ULE0 1092 aa17.02■□□□□ 0.32
CDK5RAP3-216ENST00000579853 MAP2P11137 1827 aaKnown RBP17.02■□□□□ 0.31
CDK5RAP3-216ENST00000579853 KIF20BQ96Q89 1820 aa17.01■□□□□ 0.31
CDK5RAP3-216ENST00000579853 ATP6V1AP38606 617 aa17.01■□□□□ 0.31
CDK5RAP3-216ENST00000579853 NLGN1Q8N2Q7 840 aa17.01■□□□□ 0.31
CDK5RAP3-216ENST00000579853 NCAPD2Q15021 1401 aa17.01■□□□□ 0.31
CDK5RAP3-216ENST00000579853 MMP10P09238 476 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms