RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SPATA31A1Q5TZJ5 1347 aa14.12□□□□□ -0.15
SS18-213ENST00000579640 IL2RBP14784 551 aa14.11□□□□□ -0.15
SS18-213ENST00000579640 MTHFSDQ2M296 383 aaKnown RBP14.11□□□□□ -0.15
SS18-213ENST00000579640 PHF23Q9BUL5 403 aaPredicted RBP14.11□□□□□ -0.15
SS18-213ENST00000579640 CDCA7Q9BWT1 371 aaPredicted RBP14.11□□□□□ -0.15
SS18-213ENST00000579640 RRP7AQ9Y3A4 280 aaKnown RBP14.11□□□□□ -0.15
SS18-213ENST00000579640 AFF2P51816 1311 aa14.11□□□□□ -0.15
SS18-213ENST00000579640 SPATA31A5Q5VU36 1347 aa14.11□□□□□ -0.15
SS18-213ENST00000579640 SPATA31A7Q8IWB4 1347 aa14.11□□□□□ -0.15
SS18-213ENST00000579640 OVOS2A0A0G2JMS6 1433 aa14.11□□□□□ -0.15
SS18-213ENST00000579640 NEUROD2Q15784 382 aa14.11□□□□□ -0.15
SS18-213ENST00000579640 SPG7Q9UQ90 795 aa14.11□□□□□ -0.15
SS18-213ENST00000579640 PKD1L3Q7Z443 1732 aa14.1□□□□□ -0.15
SS18-213ENST00000579640 WNK3Q9BYP7 1800 aa14.1□□□□□ -0.15
SS18-213ENST00000579640 DLG5Q8TDM6 1919 aa14.1□□□□□ -0.15
SS18-213ENST00000579640 SALL2Q9Y467 1007 aaPredicted RBP14.1□□□□□ -0.15
SS18-213ENST00000579640 ZNF521Q96K83 1311 aa14.1□□□□□ -0.15
SS18-213ENST00000579640 HTATSF1O43719 755 aaKnown RBP14.09□□□□□ -0.15
SS18-213ENST00000579640 PDE3BQ13370 1112 aa14.09□□□□□ -0.15
SS18-213ENST00000579640 USP35Q9P2H5 1018 aa14.09□□□□□ -0.15
SS18-213ENST00000579640 DISP2A7MBM2 1401 aa14.09□□□□□ -0.15
SS18-213ENST00000579640 SENP3-EIF4A1A0A087X0R7 540 aa14.08□□□□□ -0.15
SS18-213ENST00000579640 BARGINQ6ZT62 677 aa14.08□□□□□ -0.15
SS18-213ENST00000579640 WWC1Q8IX03 1113 aa14.08□□□□□ -0.15
SS18-213ENST00000579640 TRIM35Q9UPQ4 493 aa14.08□□□□□ -0.15
SS18-213ENST00000579640 CCDC9Q9Y3X0 531 aaKnown RBP14.08□□□□□ -0.15
SS18-213ENST00000579640 ZNF530Q6P9A1 599 aaPredicted RBP14.08□□□□□ -0.16
SS18-213ENST00000579640 WDR63Q8IWG1 891 aa14.08□□□□□ -0.16
SS18-213ENST00000579640 TRPC5Q9UL62 973 aaPredicted RBP14.08□□□□□ -0.16
SS18-213ENST00000579640 MAP3K5Q99683 1374 aa14.08□□□□□ -0.16
SS18-213ENST00000579640 ATRNO75882 1429 aa14.08□□□□□ -0.16
SS18-213ENST00000579640 GNAT3A8MTJ3 354 aa14.07□□□□□ -0.16
SS18-213ENST00000579640 CALD1Q05682 793 aaKnown RBP14.07□□□□□ -0.16
SS18-213ENST00000579640 AKAP4Q5JQC9 854 aa14.07□□□□□ -0.16
SS18-213ENST00000579640 C1orf141Q5JVX7 400 aa14.07□□□□□ -0.16
SS18-213ENST00000579640 RTF1Q92541 710 aaKnown RBP14.07□□□□□ -0.16
SS18-213ENST00000579640 ZCRB1Q8TBF4 217 aaKnown RBP14.06□□□□□ -0.16
SS18-213ENST00000579640 PCDH11XQ9BZA7 1347 aa14.06□□□□□ -0.16
SS18-213ENST00000579640 PCDH11YQ9BZA8 1340 aa14.06□□□□□ -0.16
SS18-213ENST00000579640 GOLGA2Q08379 1002 aa14.06□□□□□ -0.16
SS18-213ENST00000579640 IL16Q14005 1332 aa14.05□□□□□ -0.16
SS18-213ENST00000579640 ZNF772Q68DY9 489 aaPredicted RBP14.05□□□□□ -0.16
SS18-213ENST00000579640 IFNL2Q8IZJ0 200 aa14.05□□□□□ -0.16
SS18-213ENST00000579640 CENPBP07199 599 aaPredicted RBP14.04□□□□□ -0.16
SS18-213ENST00000579640 HSP90AB1P08238 724 aaKnown RBP14.04□□□□□ -0.16
SS18-213ENST00000579640 GJD4Q96KN9 370 aaPredicted RBP14.04□□□□□ -0.16
SS18-213ENST00000579640 PHKG2P15735 406 aa14.04□□□□□ -0.16
SS18-213ENST00000579640 TNS2Q63HR2 1409 aa14.03□□□□□ -0.16
SS18-213ENST00000579640 SHANK3Q9BYB0 1731 aa14.03□□□□□ -0.16
SS18-213ENST00000579640 E9PSI1 815 aa14.03□□□□□ -0.16
SS18-213ENST00000579640 EXOC5O00471 708 aa14.03□□□□□ -0.16
SS18-213ENST00000579640 QTRT2Q9H974 415 aaKnown RBP14.03□□□□□ -0.16
SS18-213ENST00000579640 GLI3P10071 1580 aa14.03□□□□□ -0.16
SS18-213ENST00000579640 ADAMTS7Q9UKP4 1686 aa14.02□□□□□ -0.17
SS18-213ENST00000579640 LRRC37A3O60309 1634 aa14.02□□□□□ -0.17
SS18-213ENST00000579640 CYP27B1O15528 508 aa14.01□□□□□ -0.17
SS18-213ENST00000579640 SLFN5Q08AF3 891 aa14.01□□□□□ -0.17
SS18-213ENST00000579640 DDB1Q16531 1140 aa14.01□□□□□ -0.17
SS18-213ENST00000579640 MCM10Q7L590 875 aa14.01□□□□□ -0.17
SS18-213ENST00000579640 CEMIPQ8WUJ3 1361 aa14.01□□□□□ -0.17
SS18-213ENST00000579640 NKX1-1Q15270 411 aaPredicted RBP14.01□□□□□ -0.17
SS18-213ENST00000579640 FAM98CQ17RN3 349 aaKnown RBP14.01□□□□□ -0.17
SS18-213ENST00000579640 MYH16Q9H6N6 1097 aa14.01□□□□□ -0.17
SS18-213ENST00000579640 THSD7AQ9UPZ6 1657 aa14.01□□□□□ -0.17
SS18-213ENST00000579640 GNAI1P63096 354 aa14□□□□□ -0.17
SS18-213ENST00000579640 DCTN1Q14203 1278 aa14□□□□□ -0.17
SS18-213ENST00000579640 IL17REQ8NFR9 667 aa14□□□□□ -0.17
SS18-213ENST00000579640 DCAF5Q96JK2 942 aa14□□□□□ -0.17
SS18-213ENST00000579640 IFT57Q9NWB7 429 aa14□□□□□ -0.17
SS18-213ENST00000579640 SCN11AQ9UI33 1791 aa14□□□□□ -0.17
SS18-213ENST00000579640 RNMTO43148 476 aaKnown RBP13.99□□□□□ -0.17
SS18-213ENST00000579640 ONECUT3O60422 494 aaPredicted RBP13.99□□□□□ -0.17
SS18-213ENST00000579640 MPRIPQ6WCQ1 1025 aa13.99□□□□□ -0.17
SS18-213ENST00000579640 TRMT2AQ8IZ69 625 aaKnown RBP13.99□□□□□ -0.17
SS18-213ENST00000579640 CDCA7LQ96GN5 454 aa13.99□□□□□ -0.17
SS18-213ENST00000579640 THUMPD2Q9BTF0 503 aaKnown RBP13.99□□□□□ -0.17
SS18-213ENST00000579640 VIRMAQ69YN4 1812 aaKnown RBP13.99□□□□□ -0.17
SS18-213ENST00000579640 DDX54Q8TDD1 881 aaKnown RBP13.99□□□□□ -0.17
SS18-213ENST00000579640 CFAP44Q96MT7 982 aa13.99□□□□□ -0.17
SS18-213ENST00000579640 BABAM1Q9NWV8 329 aa13.99□□□□□ -0.17
SS18-213ENST00000579640 ZNF853P0CG23 659 aa13.98□□□□□ -0.17
SS18-213ENST00000579640 KDM6AO15550 1401 aaPredicted RBP13.98□□□□□ -0.17
SS18-213ENST00000579640 RBM6P78332 1123 aaKnown RBP13.97□□□□□ -0.17
SS18-213ENST00000579640 TEFQ10587 303 aa13.97□□□□□ -0.17
SS18-213ENST00000579640 DUSP27Q5VZP5 1158 aa13.97□□□□□ -0.17
SS18-213ENST00000579640 LGR6Q9HBX8 967 aa13.97□□□□□ -0.17
SS18-213ENST00000579640 SPINK5Q9NQ38 1064 aaPredicted RBP13.97□□□□□ -0.17
SS18-213ENST00000579640 MRC1P22897 1456 aa13.97□□□□□ -0.17
SS18-213ENST00000579640 TAF7Q15545 349 aaPredicted RBP13.97□□□□□ -0.17
SS18-213ENST00000579640 A0A0G2JS52 829 aa13.96□□□□□ -0.17
SS18-213ENST00000579640 ERVV-2B6SEH9 535 aa13.96□□□□□ -0.17
SS18-213ENST00000579640 MYT1Q01538 1121 aa13.96□□□□□ -0.17
SS18-213ENST00000579640 CHL1O00533 1208 aa13.95□□□□□ -0.18
SS18-213ENST00000579640 LAS1LQ9Y4W2 734 aaKnown RBP13.95□□□□□ -0.18
SS18-213ENST00000579640 SIPA1L3O60292 1781 aaPredicted RBP13.95□□□□□ -0.18
SS18-213ENST00000579640 FANCIQ9NVI1 1328 aa13.95□□□□□ -0.18
SS18-213ENST00000579640 SLC52A2Q9HAB3 445 aa13.94□□□□□ -0.18
SS18-213ENST00000579640 SEPT12Q8IYM1 358 aa13.94□□□□□ -0.18
SS18-213ENST00000579640 MARCH10Q8NA82 808 aaPredicted RBP13.94□□□□□ -0.18
SS18-213ENST00000579640 MBIPQ9NS73 344 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms