RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 FLT4P35916 1363 aa12.68□□□□□ -0.38
VPS53-220ENST00000576149 KIAA0232Q92628 1395 aa12.68□□□□□ -0.38
VPS53-220ENST00000576149 PDE4CQ08493 712 aa12.68□□□□□ -0.38
VPS53-220ENST00000576149 CHMP4AQ9BY43 222 aa12.68□□□□□ -0.38
VPS53-220ENST00000576149 C1orf115Q9H7X2 142 aa12.68□□□□□ -0.38
VPS53-220ENST00000576149 FBXO3Q9UK99 471 aa12.68□□□□□ -0.38
VPS53-220ENST00000576149 ANKARQ7Z5J8 1434 aa12.67□□□□□ -0.38
VPS53-220ENST00000576149 SIRT2Q8IXJ6 389 aa12.67□□□□□ -0.38
VPS53-220ENST00000576149 CRB1P82279 1406 aa12.67□□□□□ -0.38
VPS53-220ENST00000576149 RIMS1Q86UR5 1692 aaKnown RBP12.67□□□□□ -0.38
VPS53-220ENST00000576149 KDRP35968 1356 aa12.67□□□□□ -0.38
VPS53-220ENST00000576149 C22orf23Q9BZE7 217 aa12.66□□□□□ -0.38
VPS53-220ENST00000576149 RGPD8O14715 1765 aaPredicted RBP12.66□□□□□ -0.38
VPS53-220ENST00000576149 FMN2Q9NZ56 1722 aa12.66□□□□□ -0.38
VPS53-220ENST00000576149 KCNA6P17658 529 aa12.66□□□□□ -0.38
VPS53-220ENST00000576149 KRT24Q2M2I5 525 aa12.66□□□□□ -0.38
VPS53-220ENST00000576149 ANKRD45Q5TZF3 282 aa12.66□□□□□ -0.38
VPS53-220ENST00000576149 INTS3Q68E01 1043 aaKnown RBP12.66□□□□□ -0.38
VPS53-220ENST00000576149 PIK3C2AO00443 1686 aa12.65□□□□□ -0.38
VPS53-220ENST00000576149 MFAP1P55081 439 aaKnown RBP12.65□□□□□ -0.38
VPS53-220ENST00000576149 MTHFSDQ2M296 383 aaKnown RBP12.65□□□□□ -0.38
VPS53-220ENST00000576149 TBC1D2Q9BYX2 928 aa12.65□□□□□ -0.38
VPS53-220ENST00000576149 IGSF1Q8N6C5 1336 aa12.65□□□□□ -0.38
VPS53-220ENST00000576149 RGS12O14924 1447 aa12.65□□□□□ -0.39
VPS53-220ENST00000576149 AMPHP49418 695 aa12.64□□□□□ -0.39
VPS53-220ENST00000576149 BMP2KLQ5H9B9 411 aa12.64□□□□□ -0.39
VPS53-220ENST00000576149 EYA1Q99502 592 aa12.64□□□□□ -0.39
VPS53-220ENST00000576149 FOXO3O43524 673 aa12.63□□□□□ -0.39
VPS53-220ENST00000576149 FRAT2O75474 233 aaPredicted RBP12.63□□□□□ -0.39
VPS53-220ENST00000576149 NLRP6P59044 892 aa12.63□□□□□ -0.39
VPS53-220ENST00000576149 ANTXR1Q9H6X2 564 aa12.63□□□□□ -0.39
VPS53-220ENST00000576149 CEP170BQ9Y4F5 1589 aaPredicted RBP12.63□□□□□ -0.39
VPS53-220ENST00000576149 PTPRCP08575 1304 aa12.63□□□□□ -0.39
VPS53-220ENST00000576149 RTF1Q92541 710 aaKnown RBP12.62□□□□□ -0.39
VPS53-220ENST00000576149 GAS2L2Q8NHY3 880 aa12.62□□□□□ -0.39
VPS53-220ENST00000576149 PKNOX2Q96KN3 472 aa12.61□□□□□ -0.39
VPS53-220ENST00000576149 GSE1Q14687 1217 aa12.61□□□□□ -0.39
VPS53-220ENST00000576149 SLKQ9H2G2 1235 aaPredicted RBP12.61□□□□□ -0.39
VPS53-220ENST00000576149 DCTPP1Q9H773 170 aa12.61□□□□□ -0.39
VPS53-220ENST00000576149 USP54Q70EL1 1684 aa12.61□□□□□ -0.39
VPS53-220ENST00000576149 HTATSF1O43719 755 aaKnown RBP12.6□□□□□ -0.39
VPS53-220ENST00000576149 HOXC9P31274 260 aa12.6□□□□□ -0.39
VPS53-220ENST00000576149 MIS18AQ9NYP9 233 aa12.6□□□□□ -0.39
VPS53-220ENST00000576149 TSPYL4Q9UJ04 414 aa12.6□□□□□ -0.39
VPS53-220ENST00000576149 MARF1Q9Y4F3 1742 aaKnown RBP12.6□□□□□ -0.39
VPS53-220ENST00000576149 ATP10DQ9P241 1426 aa12.6□□□□□ -0.39
VPS53-220ENST00000576149 RBM25P49756 843 aaKnown RBP12.6□□□□□ -0.39
VPS53-220ENST00000576149 ANKRD44Q8N8A2 993 aa12.6□□□□□ -0.39
VPS53-220ENST00000576149 SLC4A2P04920 1241 aa12.59□□□□□ -0.39
VPS53-220ENST00000576149 RPAP2Q8IXW5 612 aaPredicted RBP12.59□□□□□ -0.39
VPS53-220ENST00000576149 NUTM2GQ5VZR2 741 aa12.59□□□□□ -0.39
VPS53-220ENST00000576149 ABTB2Q8N961 1025 aa12.59□□□□□ -0.39
VPS53-220ENST00000576149 SAMD1Q6SPF0 538 aaPredicted RBP12.58□□□□□ -0.4
VPS53-220ENST00000576149 NWD1Q149M9 1564 aa12.58□□□□□ -0.4
VPS53-220ENST00000576149 RTL1A6NKG5 1358 aa12.58□□□□□ -0.4
VPS53-220ENST00000576149 MSH6P52701 1360 aa12.58□□□□□ -0.4
VPS53-220ENST00000576149 ANKLE2Q86XL3 938 aa12.58□□□□□ -0.4
VPS53-220ENST00000576149 DHX37Q8IY37 1157 aaKnown RBP12.58□□□□□ -0.4
VPS53-220ENST00000576149 TRHP20396 242 aaPredicted RBP12.57□□□□□ -0.4
VPS53-220ENST00000576149 CEP85Q6P2H3 762 aa12.57□□□□□ -0.4
VPS53-220ENST00000576149 GNAT3A8MTJ3 354 aa12.57□□□□□ -0.4
VPS53-220ENST00000576149 MEIS3Q99687 375 aa12.57□□□□□ -0.4
VPS53-220ENST00000576149 PHF8Q9UPP1 1060 aa12.57□□□□□ -0.4
VPS53-220ENST00000576149 LRRC37A3O60309 1634 aa12.57□□□□□ -0.4
VPS53-220ENST00000576149 TBC1D9Q6ZT07 1266 aa12.56□□□□□ -0.4
VPS53-220ENST00000576149 PLEKHM2Q8IWE5 1019 aa12.56□□□□□ -0.4
VPS53-220ENST00000576149 CHD2O14647 1828 aaKnown RBP12.56□□□□□ -0.4
VPS53-220ENST00000576149 G2E3Q7L622 706 aa12.56□□□□□ -0.4
VPS53-220ENST00000576149 GSPT1P15170 499 aaKnown RBP12.54□□□□□ -0.4
VPS53-220ENST00000576149 CCT4P50991 539 aaKnown RBP12.54□□□□□ -0.4
VPS53-220ENST00000576149 SNX21Q969T3 373 aa12.54□□□□□ -0.4
VPS53-220ENST00000576149 CDC45O75419 566 aa12.54□□□□□ -0.4
VPS53-220ENST00000576149 HSCBQ8IWL3 235 aa12.54□□□□□ -0.4
VPS53-220ENST00000576149 IL17REQ8NFR9 667 aa12.54□□□□□ -0.4
VPS53-220ENST00000576149 BABAM1Q9NWV8 329 aa12.54□□□□□ -0.4
VPS53-220ENST00000576149 MAP3K5Q99683 1374 aa12.54□□□□□ -0.4
VPS53-220ENST00000576149 LTV1Q96GA3 475 aaPredicted RBP12.53□□□□□ -0.4
VPS53-220ENST00000576149 STK31Q9BXU1 1019 aa12.53□□□□□ -0.4
VPS53-220ENST00000576149 SOS1Q07889 1333 aaPredicted RBP12.53□□□□□ -0.4
VPS53-220ENST00000576149 ZNF142P52746 1687 aaPredicted RBP12.53□□□□□ -0.4
VPS53-220ENST00000576149 F6X3S4 739 aa12.53□□□□□ -0.4
VPS53-220ENST00000576149 SPRYD3Q8NCJ5 442 aa12.53□□□□□ -0.4
VPS53-220ENST00000576149 KIF2CQ99661 725 aa12.53□□□□□ -0.4
VPS53-220ENST00000576149 TTC22Q5TAA0 569 aa12.52□□□□□ -0.4
VPS53-220ENST00000576149 CCDC30Q5VVM6 783 aa12.52□□□□□ -0.4
VPS53-220ENST00000576149 SLC4A10Q6U841 1118 aa12.52□□□□□ -0.4
VPS53-220ENST00000576149 C16orf71Q8IYS4 520 aaPredicted RBP12.52□□□□□ -0.4
VPS53-220ENST00000576149 IP6K1Q92551 441 aa12.52□□□□□ -0.4
VPS53-220ENST00000576149 TAF7Q15545 349 aaPredicted RBP12.52□□□□□ -0.41
VPS53-220ENST00000576149 CHMP5Q9NZZ3 219 aa12.52□□□□□ -0.41
VPS53-220ENST00000576149 ADGRL3Q9HAR2 1447 aa12.52□□□□□ -0.41
VPS53-220ENST00000576149 NCOA3Q9Y6Q9 1424 aa12.52□□□□□ -0.41
VPS53-220ENST00000576149 NFAT5O94916 1531 aa12.51□□□□□ -0.41
VPS53-220ENST00000576149 HMMRO75330 724 aa12.51□□□□□ -0.41
VPS53-220ENST00000576149 RBM33Q96EV2 1170 aaKnown RBP12.51□□□□□ -0.41
VPS53-220ENST00000576149 FLIIQ13045 1269 aa12.51□□□□□ -0.41
VPS53-220ENST00000576149 USHBP1Q8N6Y0 703 aa12.5□□□□□ -0.41
VPS53-220ENST00000576149 PSME1Q06323 249 aa12.5□□□□□ -0.41
VPS53-220ENST00000576149 ESCO1Q5FWF5 840 aa12.5□□□□□ -0.41
VPS53-220ENST00000576149 OTUD7AQ8TE49 926 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms