RNA–Protein interactions for RNA: ENST00000574911.5

NCBP3-204, Transcript of nuclear cap binding subunit 3, humanhuman

TSL 1 (best)

Gene NCBP3, Length 2,701 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3-204ENST00000574911 CDC45O75419 566 aa11.15□□□□□ -0.63
NCBP3-204ENST00000574911 GSPT1P15170 499 aaKnown RBP11.15□□□□□ -0.63
NCBP3-204ENST00000574911 RPAP2Q8IXW5 612 aaPredicted RBP11.15□□□□□ -0.63
NCBP3-204ENST00000574911 SLIT1O75093 1534 aa11.14□□□□□ -0.63
NCBP3-204ENST00000574911 ARHGAP23Q9P227 1491 aa11.14□□□□□ -0.63
NCBP3-204ENST00000574911 SLC26A8Q96RN1 970 aa11.14□□□□□ -0.63
NCBP3-204ENST00000574911 FMN2Q9NZ56 1722 aa11.14□□□□□ -0.63
NCBP3-204ENST00000574911 MAP3K19Q56UN5 1328 aa11.14□□□□□ -0.63
NCBP3-204ENST00000574911 SBNO1A3KN83 1393 aa11.14□□□□□ -0.63
NCBP3-204ENST00000574911 CEP85Q6P2H3 762 aa11.14□□□□□ -0.63
NCBP3-204ENST00000574911 RTL1A6NKG5 1358 aa11.13□□□□□ -0.63
NCBP3-204ENST00000574911 L1TD1Q5T7N2 865 aaKnown RBP11.13□□□□□ -0.63
NCBP3-204ENST00000574911 CIZ1Q9ULV3 898 aaPredicted RBP11.13□□□□□ -0.63
NCBP3-204ENST00000574911 AMOTL2Q9Y2J4 779 aa11.13□□□□□ -0.63
NCBP3-204ENST00000574911 TBX22Q9Y458 520 aa11.13□□□□□ -0.63
NCBP3-204ENST00000574911 EID1Q9Y6B2 187 aa11.13□□□□□ -0.63
NCBP3-204ENST00000574911 KDRP35968 1356 aa11.13□□□□□ -0.63
NCBP3-204ENST00000574911 MTHFSDQ2M296 383 aaKnown RBP11.13□□□□□ -0.63
NCBP3-204ENST00000574911 TTC22Q5TAA0 569 aa11.13□□□□□ -0.63
NCBP3-204ENST00000574911 FLT4P35916 1363 aa11.12□□□□□ -0.63
NCBP3-204ENST00000574911 MSH6P52701 1360 aa11.12□□□□□ -0.63
NCBP3-204ENST00000574911 EIF5BO60841 1220 aaKnown RBP11.12□□□□□ -0.63
NCBP3-204ENST00000574911 DIP2AQ14689 1571 aa11.12□□□□□ -0.63
NCBP3-204ENST00000574911 HSP90AB1P08238 724 aaKnown RBP11.12□□□□□ -0.63
NCBP3-204ENST00000574911 FOXO3O43524 673 aa11.11□□□□□ -0.63
NCBP3-204ENST00000574911 TRAK2O60296 914 aa11.11□□□□□ -0.63
NCBP3-204ENST00000574911 CEBPAP49715 358 aaPredicted RBP11.11□□□□□ -0.63
NCBP3-204ENST00000574911 C16orf71Q8IYS4 520 aaPredicted RBP11.11□□□□□ -0.63
NCBP3-204ENST00000574911 RIMS1Q86UR5 1692 aaKnown RBP11.11□□□□□ -0.63
NCBP3-204ENST00000574911 FSD2A1L4K1 749 aa11.11□□□□□ -0.63
NCBP3-204ENST00000574911 CD2BP2O95400 341 aaKnown RBP11.11□□□□□ -0.63
NCBP3-204ENST00000574911 MEIS3Q99687 375 aa11.11□□□□□ -0.63
NCBP3-204ENST00000574911 IGSF1Q8N6C5 1336 aa11.11□□□□□ -0.63
NCBP3-204ENST00000574911 CEP170BQ9Y4F5 1589 aaPredicted RBP11.11□□□□□ -0.63
NCBP3-204ENST00000574911 PIK3C2AO00443 1686 aa11.1□□□□□ -0.63
NCBP3-204ENST00000574911 DDX11L8A8MPP1 907 aa11.1□□□□□ -0.63
NCBP3-204ENST00000574911 SOX12O15370 315 aa11.1□□□□□ -0.63
NCBP3-204ENST00000574911 SLC4A2P04920 1241 aa11.1□□□□□ -0.63
NCBP3-204ENST00000574911 K7ELQ4 463 aaPredicted RBP11.1□□□□□ -0.63
NCBP3-204ENST00000574911 RAB3GAP1Q15042 981 aa11.1□□□□□ -0.63
NCBP3-204ENST00000574911 EYA1Q99502 592 aa11.1□□□□□ -0.63
NCBP3-204ENST00000574911 MIS18AQ9NYP9 233 aa11.1□□□□□ -0.63
NCBP3-204ENST00000574911 GAS2L2Q8NHY3 880 aa11.09□□□□□ -0.63
NCBP3-204ENST00000574911 RTF1Q92541 710 aaKnown RBP11.09□□□□□ -0.63
NCBP3-204ENST00000574911 RBM42Q9BTD8 480 aaKnown RBP11.09□□□□□ -0.63
NCBP3-204ENST00000574911 TSPYL4Q9UJ04 414 aa11.09□□□□□ -0.63
NCBP3-204ENST00000574911 LRRC37A3O60309 1634 aa11.09□□□□□ -0.63
NCBP3-204ENST00000574911 HTATSF1O43719 755 aaKnown RBP11.09□□□□□ -0.63
NCBP3-204ENST00000574911 NGDNQ8NEJ9 315 aaKnown RBP11.09□□□□□ -0.63
NCBP3-204ENST00000574911 OTUD7AQ8TE49 926 aaPredicted RBP11.09□□□□□ -0.63
NCBP3-204ENST00000574911 TNPO1Q92973 898 aaKnown RBP11.09□□□□□ -0.63
NCBP3-204ENST00000574911 AMPHP49418 695 aa11.08□□□□□ -0.64
NCBP3-204ENST00000574911 G2E3Q7L622 706 aa11.08□□□□□ -0.64
NCBP3-204ENST00000574911 RGPD8O14715 1765 aaPredicted RBP11.08□□□□□ -0.64
NCBP3-204ENST00000574911 XRN1Q8IZH2 1706 aaKnown RBP11.08□□□□□ -0.64
NCBP3-204ENST00000574911 ANKARQ7Z5J8 1434 aa11.08□□□□□ -0.64
NCBP3-204ENST00000574911 GOLGA6L3A6NEY3 463 aa11.08□□□□□ -0.64
NCBP3-204ENST00000574911 CCT4P50991 539 aaKnown RBP11.08□□□□□ -0.64
NCBP3-204ENST00000574911 USP54Q70EL1 1684 aa11.08□□□□□ -0.64
NCBP3-204ENST00000574911 SMARCA5O60264 1052 aaPredicted RBP11.08□□□□□ -0.64
NCBP3-204ENST00000574911 USP26Q9BXU7 913 aa11.08□□□□□ -0.64
NCBP3-204ENST00000574911 SDSP20132 328 aa11.07□□□□□ -0.64
NCBP3-204ENST00000574911 RABEP1Q15276 862 aa11.07□□□□□ -0.64
NCBP3-204ENST00000574911 FAM43AQ8N2R8 423 aa11.07□□□□□ -0.64
NCBP3-204ENST00000574911 MARF1Q9Y4F3 1742 aaKnown RBP11.07□□□□□ -0.64
NCBP3-204ENST00000574911 NWD1Q149M9 1564 aa11.07□□□□□ -0.64
NCBP3-204ENST00000574911 HMMRO75330 724 aa11.06□□□□□ -0.64
NCBP3-204ENST00000574911 XRCC6P12956 609 aaKnown RBP eCLIP11.06□□□□□ -0.64
NCBP3-204ENST00000574911 GBP4Q96PP9 640 aa11.06□□□□□ -0.64
NCBP3-204ENST00000574911 GZF1Q9H116 711 aaPredicted RBP11.06□□□□□ -0.64
NCBP3-204ENST00000574911 F6X3S4 739 aa11.06□□□□□ -0.64
NCBP3-204ENST00000574911 THEMISQ8N1K5 641 aaPredicted RBP11.06□□□□□ -0.64
NCBP3-204ENST00000574911 OSBPL3Q9H4L5 887 aa11.06□□□□□ -0.64
NCBP3-204ENST00000574911 FAM208AQ9UK61 1670 aaKnown RBP11.05□□□□□ -0.64
NCBP3-204ENST00000574911 PTMSP20962 102 aa11.05□□□□□ -0.64
NCBP3-204ENST00000574911 HOXC9P31274 260 aa11.05□□□□□ -0.64
NCBP3-204ENST00000574911 SLC4A10Q6U841 1118 aa11.05□□□□□ -0.64
NCBP3-204ENST00000574911 FOXD4L1Q9NU39 408 aa11.05□□□□□ -0.64
NCBP3-204ENST00000574911 SOS1Q07889 1333 aaPredicted RBP11.04□□□□□ -0.64
NCBP3-204ENST00000574911 GNAT3A8MTJ3 354 aa11.04□□□□□ -0.64
NCBP3-204ENST00000574911 GNAI2P04899 355 aa11.04□□□□□ -0.64
NCBP3-204ENST00000574911 HSP90AA1P07900 732 aaKnown RBP11.04□□□□□ -0.64
NCBP3-204ENST00000574911 NLRP6P59044 892 aa11.04□□□□□ -0.64
NCBP3-204ENST00000574911 CASC1Q6TDU7 716 aa11.04□□□□□ -0.64
NCBP3-204ENST00000574911 CLEC17AQ6ZS10 378 aa11.04□□□□□ -0.64
NCBP3-204ENST00000574911 APBB1O00213 710 aa11.04□□□□□ -0.64
NCBP3-204ENST00000574911 STK31Q9BXU1 1019 aa11.04□□□□□ -0.64
NCBP3-204ENST00000574911 BABAM1Q9NWV8 329 aa11.04□□□□□ -0.64
NCBP3-204ENST00000574911 FER1L4A9Z1Z3 1794 aa11.03□□□□□ -0.64
NCBP3-204ENST00000574911 CCDC30Q5VVM6 783 aa11.03□□□□□ -0.64
NCBP3-204ENST00000574911 MAP3K5Q99683 1374 aa11.03□□□□□ -0.64
NCBP3-204ENST00000574911 FLIIQ13045 1269 aa11.03□□□□□ -0.64
NCBP3-204ENST00000574911 SKOR2Q2VWA4 1001 aaPredicted RBP11.03□□□□□ -0.64
NCBP3-204ENST00000574911 ISY1Q9ULR0 285 aaKnown RBP11.03□□□□□ -0.64
NCBP3-204ENST00000574911 MRE11P49959 708 aa11.02□□□□□ -0.64
NCBP3-204ENST00000574911 PDE1AP54750 535 aa11.02□□□□□ -0.64
NCBP3-204ENST00000574911 IL17REQ8NFR9 667 aa11.02□□□□□ -0.64
NCBP3-204ENST00000574911 SALL3Q9BXA9 1300 aa11.02□□□□□ -0.65
NCBP3-204ENST00000574911 KCNA6P17658 529 aa11.02□□□□□ -0.65
NCBP3-204ENST00000574911 SSFA2P28290 1259 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms