RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SYTL4Q96C24 671 aaPredicted RBP26.2■■□□□ 1.78
CLK3-227ENST00000570296 NSD2O96028 1365 aa26.2■■□□□ 1.78
CLK3-227ENST00000570296 TOMM70O94826 608 aa26.18■■□□□ 1.78
CLK3-227ENST00000570296 COL13A1Q5TAT6 717 aaPredicted RBP26.18■■□□□ 1.78
CLK3-227ENST00000570296 WDR90Q96KV7 1748 aa26.18■■□□□ 1.78
CLK3-227ENST00000570296 USP31Q70CQ4 1352 aa26.18■■□□□ 1.78
CLK3-227ENST00000570296 FAM208AQ9UK61 1670 aaKnown RBP26.17■■□□□ 1.78
CLK3-227ENST00000570296 KTN1Q86UP2 1357 aaKnown RBP26.17■■□□□ 1.78
CLK3-227ENST00000570296 MON2Q7Z3U7 1717 aa26.17■■□□□ 1.78
CLK3-227ENST00000570296 CICQ96RK0 1608 aaPredicted RBP26.16■■□□□ 1.78
CLK3-227ENST00000570296 C5P01031 1676 aa26.15■■□□□ 1.78
CLK3-227ENST00000570296 IGSF1Q8N6C5 1336 aa26.15■■□□□ 1.78
CLK3-227ENST00000570296 CAPN15O75808 1086 aa26.15■■□□□ 1.78
CLK3-227ENST00000570296 FLAD1Q8NFF5 587 aa26.15■■□□□ 1.78
CLK3-227ENST00000570296 HMGB2P26583 209 aaKnown RBP26.14■■□□□ 1.78
CLK3-227ENST00000570296 PRELPP51888 382 aa26.14■■□□□ 1.78
CLK3-227ENST00000570296 JMYQ8N9B5 988 aa26.12■■□□□ 1.77
CLK3-227ENST00000570296 USP47Q96K76 1375 aa26.11■■□□□ 1.77
CLK3-227ENST00000570296 TNS4Q8IZW8 715 aa26.11■■□□□ 1.77
CLK3-227ENST00000570296 KLRG1Q96E93 195 aa26.1■■□□□ 1.77
CLK3-227ENST00000570296 PCNTO95613 3336 aa26.1■■□□□ 1.77
CLK3-227ENST00000570296 TAF1LQ8IZX4 1826 aa26.09■■□□□ 1.77
CLK3-227ENST00000570296 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.06■■□□□ 1.76
CLK3-227ENST00000570296 WWC3Q9ULE0 1092 aa26.06■■□□□ 1.76
CLK3-227ENST00000570296 RBM46Q8TBY0 533 aaKnown RBP26.04■■□□□ 1.76
CLK3-227ENST00000570296 NME9Q86XW9 330 aa26.03■■□□□ 1.76
CLK3-227ENST00000570296 ZCRB1Q8TBF4 217 aaKnown RBP26.03■■□□□ 1.76
CLK3-227ENST00000570296 IP6K1Q92551 441 aa26.01■■□□□ 1.75
CLK3-227ENST00000570296 C4BP0C0L5 1744 aa26■■□□□ 1.75
CLK3-227ENST00000570296 TOGARAM1Q9Y4F4 1720 aa26■■□□□ 1.75
CLK3-227ENST00000570296 SBNO2Q9Y2G9 1366 aa26■■□□□ 1.75
CLK3-227ENST00000570296 UBR3Q6ZT12 1888 aa26■■□□□ 1.75
CLK3-227ENST00000570296 NMRK2Q9NPI5 230 aa25.99■■□□□ 1.75
CLK3-227ENST00000570296 NSD3Q9BZ95 1437 aa25.98■■□□□ 1.75
CLK3-227ENST00000570296 FSTL1Q12841 308 aa25.97■■□□□ 1.75
CLK3-227ENST00000570296 LTV1Q96GA3 475 aaPredicted RBP25.97■■□□□ 1.75
CLK3-227ENST00000570296 MEGF6O75095 1541 aa25.97■■□□□ 1.75
CLK3-227ENST00000570296 HTRA3P83110 453 aa25.96■■□□□ 1.75
CLK3-227ENST00000570296 PALLDQ8WX93 1383 aa25.95■■□□□ 1.75
CLK3-227ENST00000570296 KIF13BQ9NQT8 1826 aa25.95■■□□□ 1.75
CLK3-227ENST00000570296 AK7Q96M32 723 aa25.95■■□□□ 1.74
CLK3-227ENST00000570296 CD163L1Q9NR16 1453 aa25.95■■□□□ 1.74
CLK3-227ENST00000570296 RGPD2P0DJD1 1756 aa25.95■■□□□ 1.74
CLK3-227ENST00000570296 C16orf71Q8IYS4 520 aaPredicted RBP25.94■■□□□ 1.74
CLK3-227ENST00000570296 KIAA1551Q9HCM1 1747 aa25.92■■□□□ 1.74
CLK3-227ENST00000570296 EDC4Q6P2E9 1401 aaKnown RBP25.92■■□□□ 1.74
CLK3-227ENST00000570296 PXDNLA1KZ92 1463 aa25.91■■□□□ 1.74
CLK3-227ENST00000570296 CGNL1Q0VF96 1302 aa25.91■■□□□ 1.74
CLK3-227ENST00000570296 AMIGO3Q86WK7 504 aa25.91■■□□□ 1.74
CLK3-227ENST00000570296 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.9■■□□□ 1.74
CLK3-227ENST00000570296 PHF14O94880 888 aa25.89■■□□□ 1.74
CLK3-227ENST00000570296 SSFA2P28290 1259 aa25.89■■□□□ 1.74
CLK3-227ENST00000570296 PLEKHG2Q9H7P9 1386 aa25.89■■□□□ 1.74
CLK3-227ENST00000570296 N4BP2Q86UW6 1770 aaPredicted RBP25.89■■□□□ 1.73
CLK3-227ENST00000570296 HDGFL2Q7Z4V5 671 aaPredicted RBP25.88■■□□□ 1.73
CLK3-227ENST00000570296 TGFB2P61812 414 aa25.87■■□□□ 1.73
CLK3-227ENST00000570296 SMARCC1Q92922 1105 aaPredicted RBP25.87■■□□□ 1.73
CLK3-227ENST00000570296 BCS1LQ9Y276 419 aa25.87■■□□□ 1.73
CLK3-227ENST00000570296 C10orf71Q711Q0 1435 aa25.87■■□□□ 1.73
CLK3-227ENST00000570296 SLC34A2O95436 690 aa25.86■■□□□ 1.73
CLK3-227ENST00000570296 ARHGAP27Q6ZUM4 889 aa25.86■■□□□ 1.73
CLK3-227ENST00000570296 HOXC9P31274 260 aa25.85■■□□□ 1.73
CLK3-227ENST00000570296 ITGB4P16144 1822 aa25.85■■□□□ 1.73
CLK3-227ENST00000570296 PKD1L3Q7Z443 1732 aa25.85■■□□□ 1.73
CLK3-227ENST00000570296 BRCA1P38398 1863 aaKnown RBP25.84■■□□□ 1.73
CLK3-227ENST00000570296 MPRIPQ6WCQ1 1025 aa25.83■■□□□ 1.73
CLK3-227ENST00000570296 TNRC6CQ9HCJ0 1690 aaKnown RBP25.83■■□□□ 1.73
CLK3-227ENST00000570296 MAP3K19Q56UN5 1328 aa25.83■■□□□ 1.73
CLK3-227ENST00000570296 KDM2BQ8NHM5 1336 aa25.83■■□□□ 1.73
CLK3-227ENST00000570296 PCDH11XQ9BZA7 1347 aa25.82■■□□□ 1.72
CLK3-227ENST00000570296 PCDH11YQ9BZA8 1340 aa25.82■■□□□ 1.72
CLK3-227ENST00000570296 ARFGEF1Q9Y6D6 1849 aa25.81■■□□□ 1.72
CLK3-227ENST00000570296 MMP10P09238 476 aa25.81■■□□□ 1.72
CLK3-227ENST00000570296 AMPHP49418 695 aa25.81■■□□□ 1.72
CLK3-227ENST00000570296 C9orf131Q5VYM1 1079 aa25.81■■□□□ 1.72
CLK3-227ENST00000570296 SMIM5Q71RC9 77 aa25.81■■□□□ 1.72
CLK3-227ENST00000570296 TMC1Q8TDI8 760 aa25.81■■□□□ 1.72
CLK3-227ENST00000570296 RAPGEF4Q8WZA2 1011 aa25.81■■□□□ 1.72
CLK3-227ENST00000570296 MAP2P11137 1827 aaKnown RBP25.81■■□□□ 1.72
CLK3-227ENST00000570296 ROCK2O75116 1388 aaKnown RBP25.81■■□□□ 1.72
CLK3-227ENST00000570296 HSPA1AP0DMV8 641 aaKnown RBP25.8■■□□□ 1.72
CLK3-227ENST00000570296 HSPA1BP0DMV9 641 aaKnown RBP25.8■■□□□ 1.72
CLK3-227ENST00000570296 KCPQ6ZWJ8 1503 aa25.79■■□□□ 1.72
CLK3-227ENST00000570296 A0A0G2JLW4 131 aa25.79■■□□□ 1.72
CLK3-227ENST00000570296 TERF2IPQ9NYB0 399 aa25.79■■□□□ 1.72
CLK3-227ENST00000570296 RTL1A6NKG5 1358 aa25.79■■□□□ 1.72
CLK3-227ENST00000570296 SMC1BQ8NDV3 1235 aa25.78■■□□□ 1.72
CLK3-227ENST00000570296 A0A1W2PP64 1363 aa25.78■■□□□ 1.72
CLK3-227ENST00000570296 FCHSD2O94868 740 aa25.77■■□□□ 1.72
CLK3-227ENST00000570296 TATP17735 454 aaPredicted RBP25.77■■□□□ 1.72
CLK3-227ENST00000570296 NBPF6Q5VWK0 638 aa25.77■■□□□ 1.72
CLK3-227ENST00000570296 NBPF4Q96M43 638 aa25.77■■□□□ 1.72
CLK3-227ENST00000570296 SLC12A5Q9H2X9 1139 aa25.77■■□□□ 1.72
CLK3-227ENST00000570296 LINC00116Q8NCU8 138 aa25.75■■□□□ 1.71
CLK3-227ENST00000570296 COG3Q96JB2 828 aa25.74■■□□□ 1.71
CLK3-227ENST00000570296 SMG6Q86US8 1419 aaKnown RBP25.73■■□□□ 1.71
CLK3-227ENST00000570296 LOC102724428A0A0B4J2F2 783 aa25.73■■□□□ 1.71
CLK3-227ENST00000570296 GNPATO15228 680 aa25.73■■□□□ 1.71
CLK3-227ENST00000570296 DPEP1P16444 411 aa25.73■■□□□ 1.71
CLK3-227ENST00000570296 SIK1P57059 783 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms