RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 NBPF14Q5TI25 921 aa27.85■■■□□ 2.05
CLK3-225ENST00000569063 RAPGEF4Q8WZA2 1011 aa27.85■■■□□ 2.05
CLK3-225ENST00000569063 ACSBG1Q96GR2 724 aa27.85■■■□□ 2.05
CLK3-225ENST00000569063 TNNT2P45379 298 aaPredicted RBP27.84■■■□□ 2.05
CLK3-225ENST00000569063 KNSTRNQ9Y448 316 aa27.84■■■□□ 2.05
CLK3-225ENST00000569063 PROM2Q8N271 834 aa27.83■■■□□ 2.05
CLK3-225ENST00000569063 TATP17735 454 aaPredicted RBP27.81■■■□□ 2.04
CLK3-225ENST00000569063 NCAPD2Q15021 1401 aa27.81■■■□□ 2.04
CLK3-225ENST00000569063 SHANK3Q9BYB0 1731 aa27.8■■■□□ 2.04
CLK3-225ENST00000569063 MORC1Q86VD1 984 aa27.79■■■□□ 2.04
CLK3-225ENST00000569063 TXNRD1Q16881 649 aa27.78■■■□□ 2.04
CLK3-225ENST00000569063 AMER1Q5JTC6 1135 aaPredicted RBP27.78■■■□□ 2.04
CLK3-225ENST00000569063 LRP5O75197 1615 aa27.78■■■□□ 2.04
CLK3-225ENST00000569063 EYA1Q99502 592 aa27.76■■■□□ 2.03
CLK3-225ENST00000569063 PER1O15534 1290 aaPredicted RBP27.75■■■□□ 2.03
CLK3-225ENST00000569063 BTAF1O14981 1849 aa27.74■■■□□ 2.03
CLK3-225ENST00000569063 EIF4A2Q14240 407 aaKnown RBP27.74■■■□□ 2.03
CLK3-225ENST00000569063 PCDH11XQ9BZA7 1347 aa27.73■■■□□ 2.03
CLK3-225ENST00000569063 PCDH11YQ9BZA8 1340 aa27.73■■■□□ 2.03
CLK3-225ENST00000569063 PRIM1P49642 420 aaKnown RBP27.72■■■□□ 2.03
CLK3-225ENST00000569063 ANO8Q9HCE9 1232 aaPredicted RBP27.71■■■□□ 2.03
CLK3-225ENST00000569063 DOT1LQ8TEK3 1739 aa27.7■■■□□ 2.02
CLK3-225ENST00000569063 SYTL4Q96C24 671 aaPredicted RBP27.69■■■□□ 2.02
CLK3-225ENST00000569063 PKD1L3Q7Z443 1732 aa27.68■■■□□ 2.02
CLK3-225ENST00000569063 CYP27B1O15528 508 aa27.68■■■□□ 2.02
CLK3-225ENST00000569063 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.68■■■□□ 2.02
CLK3-225ENST00000569063 KAT6BQ8WYB5 2073 aa27.68■■■□□ 2.02
CLK3-225ENST00000569063 SPG7Q9UQ90 795 aa27.67■■■□□ 2.02
CLK3-225ENST00000569063 IGSF1Q8N6C5 1336 aa27.67■■■□□ 2.02
CLK3-225ENST00000569063 PLEKHG2Q9H7P9 1386 aa27.65■■■□□ 2.02
CLK3-225ENST00000569063 STK32BQ9NY57 414 aa27.65■■■□□ 2.02
CLK3-225ENST00000569063 SLC15A2Q16348 729 aa27.64■■■□□ 2.02
CLK3-225ENST00000569063 NPC1L1Q9UHC9 1359 aa27.63■■■□□ 2.01
CLK3-225ENST00000569063 NKX1-1Q15270 411 aaPredicted RBP27.63■■■□□ 2.01
CLK3-225ENST00000569063 SLC27A3Q5K4L6 730 aa27.63■■■□□ 2.01
CLK3-225ENST00000569063 LRRC4BQ9NT99 713 aa27.63■■■□□ 2.01
CLK3-225ENST00000569063 PAPPAQ13219 1627 aa27.61■■■□□ 2.01
CLK3-225ENST00000569063 CC2D1BQ5T0F9 858 aaKnown RBP27.61■■■□□ 2.01
CLK3-225ENST00000569063 CASZ1Q86V15 1759 aa27.58■■■□□ 2.01
CLK3-225ENST00000569063 MTHFSP49914 203 aa27.58■■■□□ 2.01
CLK3-225ENST00000569063 IL13P35225 146 aa27.57■■■□□ 2
CLK3-225ENST00000569063 IFNL2Q8IZJ0 200 aa27.57■■■□□ 2
CLK3-225ENST00000569063 PDGFDQ9GZP0 370 aaPredicted RBP27.57■■■□□ 2
CLK3-225ENST00000569063 SPON1Q9HCB6 807 aa27.57■■■□□ 2
CLK3-225ENST00000569063 LY75O60449 1722 aa27.56■■■□□ 2
CLK3-225ENST00000569063 PHKG2P15735 406 aa27.56■■■□□ 2
CLK3-225ENST00000569063 MPRIPQ6WCQ1 1025 aa27.55■■■□□ 2
CLK3-225ENST00000569063 TOGARAM1Q9Y4F4 1720 aa27.55■■■□□ 2
CLK3-225ENST00000569063 ZNF827Q17R98 1081 aa27.53■■■□□ 2
CLK3-225ENST00000569063 AKT1S1Q96B36 256 aa27.53■■■□□ 2
CLK3-225ENST00000569063 KDRP35968 1356 aa27.52■■■□□ 2
CLK3-225ENST00000569063 PLEKHO1Q53GL0 409 aaPredicted RBP27.52■■■□□ 2
CLK3-225ENST00000569063 AEBP1Q8IUX7 1158 aa27.52■■■□□ 2
CLK3-225ENST00000569063 CCNL1Q9UK58 526 aaPredicted RBP27.52■■■□□ 2
CLK3-225ENST00000569063 KCNQ4P56696 695 aa27.51■■□□□ 1.99
CLK3-225ENST00000569063 AMOTQ4VCS5 1084 aa27.51■■□□□ 1.99
CLK3-225ENST00000569063 SULT6B1Q6IMI4 303 aa27.51■■□□□ 1.99
CLK3-225ENST00000569063 ITGB4P16144 1822 aa27.51■■□□□ 1.99
CLK3-225ENST00000569063 PIGBQ92521 554 aa27.5■■□□□ 1.99
CLK3-225ENST00000569063 PALLDQ8WX93 1383 aa27.48■■□□□ 1.99
CLK3-225ENST00000569063 ZBTB7AO95365 584 aa27.48■■□□□ 1.99
CLK3-225ENST00000569063 SMARCC1Q92922 1105 aaPredicted RBP27.48■■□□□ 1.99
CLK3-225ENST00000569063 HSP90AB1P08238 724 aaKnown RBP27.46■■□□□ 1.99
CLK3-225ENST00000569063 HMGB2P26583 209 aaKnown RBP27.46■■□□□ 1.99
CLK3-225ENST00000569063 CNGB1Q14028 1251 aaPredicted RBP27.46■■□□□ 1.99
CLK3-225ENST00000569063 TMOD3Q9NYL9 352 aa27.46■■□□□ 1.99
CLK3-225ENST00000569063 DIAPH1O60610 1272 aaKnown RBP27.45■■□□□ 1.98
CLK3-225ENST00000569063 DCAF5Q96JK2 942 aa27.45■■□□□ 1.98
CLK3-225ENST00000569063 MTFR1LQ9H019 292 aa27.45■■□□□ 1.98
CLK3-225ENST00000569063 ZNF530Q6P9A1 599 aaPredicted RBP27.44■■□□□ 1.98
CLK3-225ENST00000569063 TFCP2L1Q9NZI6 479 aa27.44■■□□□ 1.98
CLK3-225ENST00000569063 PPP1R1BQ9UD71 204 aaPredicted RBP27.44■■□□□ 1.98
CLK3-225ENST00000569063 ERVV-2B6SEH9 535 aa27.43■■□□□ 1.98
CLK3-225ENST00000569063 PTGER2P43116 358 aa27.43■■□□□ 1.98
CLK3-225ENST00000569063 ATF5Q9Y2D1 282 aaPredicted RBP27.43■■□□□ 1.98
CLK3-225ENST00000569063 QSER1Q2KHR3 1735 aa27.43■■□□□ 1.98
CLK3-225ENST00000569063 PNPLA7Q6ZV29 1317 aa27.41■■□□□ 1.98
CLK3-225ENST00000569063 COL3A1P02461 1466 aaPredicted RBP27.4■■□□□ 1.98
CLK3-225ENST00000569063 C1orf141Q5JVX7 400 aa27.4■■□□□ 1.98
CLK3-225ENST00000569063 SLC16A10Q8TF71 515 aa27.39■■□□□ 1.98
CLK3-225ENST00000569063 SGIP1Q9BQI5 828 aa27.39■■□□□ 1.98
CLK3-225ENST00000569063 ASAP1Q9ULH1 1129 aa27.39■■□□□ 1.98
CLK3-225ENST00000569063 KDM6AO15550 1401 aaPredicted RBP27.39■■□□□ 1.97
CLK3-225ENST00000569063 C5P01031 1676 aa27.38■■□□□ 1.97
CLK3-225ENST00000569063 HMOX1P09601 288 aa27.38■■□□□ 1.97
CLK3-225ENST00000569063 ATG3Q9NT62 314 aa27.37■■□□□ 1.97
CLK3-225ENST00000569063 LOC102724428A0A0B4J2F2 783 aa27.36■■□□□ 1.97
CLK3-225ENST00000569063 SIK1P57059 783 aa27.36■■□□□ 1.97
CLK3-225ENST00000569063 TUBGCP6Q96RT7 1819 aa27.36■■□□□ 1.97
CLK3-225ENST00000569063 TAF1LQ8IZX4 1826 aa27.35■■□□□ 1.97
CLK3-225ENST00000569063 AKAP4Q5JQC9 854 aa27.34■■□□□ 1.97
CLK3-225ENST00000569063 PPP2R1AP30153 589 aa27.33■■□□□ 1.97
CLK3-225ENST00000569063 CABP4P57796 275 aa27.33■■□□□ 1.97
CLK3-225ENST00000569063 CFAP53Q96M91 514 aa27.32■■□□□ 1.96
CLK3-225ENST00000569063 C4BP0C0L5 1744 aa27.31■■□□□ 1.96
CLK3-225ENST00000569063 COL23A1Q86Y22 540 aaPredicted RBP27.31■■□□□ 1.96
CLK3-225ENST00000569063 U2SURPO15042 1029 aaKnown RBP27.3■■□□□ 1.96
CLK3-225ENST00000569063 ATP6V1AP38606 617 aa27.29■■□□□ 1.96
CLK3-225ENST00000569063 MTHFSDQ2M296 383 aaKnown RBP27.29■■□□□ 1.96
CLK3-225ENST00000569063 NFATC2IPQ8NCF5 419 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms